Wall clock time and date at job start Tue Mar 31 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36537 * 120.09342 * 2 1 4 4 C 1.40720 * 118.24206 * 180.23999 * 3 2 1 5 5 C 1.40426 * 121.27518 * 179.80422 * 4 3 2 6 6 C 1.36119 * 119.64900 * 179.97438 * 5 4 3 7 7 C 1.39446 * 120.91792 * 0.02562 * 6 5 4 8 8 C 1.35986 * 121.09020 * 0.02562 * 7 6 5 9 9 C 1.40828 * 119.74050 * 359.95619 * 8 7 6 10 10 N 1.33244 * 121.00824 * 180.02562 * 9 8 7 11 11 C 1.31906 * 121.30282 * 179.97438 * 10 9 8 12 12 C 1.48273 * 119.23745 * 179.97438 * 11 10 9 13 13 O 1.21497 * 119.99832 * 174.57679 * 12 11 10 14 14 N 1.34778 * 119.99908 * 354.58327 * 12 11 10 15 15 C 1.46496 * 119.99863 * 179.97438 * 14 12 11 16 16 C 1.53073 * 109.45274 * 84.78564 * 15 14 12 17 17 C 1.53192 * 109.29508 * 181.24280 * 16 15 14 18 18 N 1.46917 * 108.89464 * 305.57740 * 17 16 15 19 19 C 1.36937 * 120.63460 * 233.51444 * 18 17 16 20 20 H 1.08001 * 120.00293 * 149.70880 * 19 18 17 21 21 C 1.38815 * 120.00107 * 329.70937 * 19 18 17 22 22 N 1.31619 * 119.99419 * 347.04380 * 21 19 18 23 23 Si 1.86790 * 120.00256 * 167.04437 * 21 19 18 24 24 H 1.48503 * 109.47468 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47465 * 120.00137 * 23 21 19 26 26 H 1.48502 * 109.47116 * 239.99786 * 23 21 19 27 27 C 1.46927 * 118.73921 * 53.53674 * 18 17 16 28 28 C 1.53034 * 109.46070 * 204.99803 * 15 14 12 29 29 H 1.09006 * 109.46767 * 263.39991 * 1 2 3 30 30 H 1.09001 * 109.46904 * 23.39920 * 1 2 3 31 31 H 1.08997 * 109.47346 * 143.40345 * 1 2 3 32 32 H 1.08000 * 120.87900 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.17171 * 0.02562 * 5 4 3 34 34 H 1.08007 * 119.54467 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.45507 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.12875 * 180.02562 * 8 7 6 37 37 H 0.97002 * 119.99885 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.45974 * 324.97255 * 15 14 12 39 39 H 1.09001 * 109.39175 * 61.36785 * 16 15 14 40 40 H 1.09003 * 109.62317 * 301.26086 * 16 15 14 41 41 H 1.09004 * 109.58952 * 185.71792 * 17 16 15 42 42 H 1.08997 * 109.58820 * 65.43938 * 17 16 15 43 43 H 0.97004 * 119.99446 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.58689 * 66.17778 * 27 18 17 45 45 H 1.09006 * 109.58982 * 186.46228 * 27 18 17 46 46 H 1.08997 * 109.50420 * 58.65939 * 28 15 14 47 47 H 1.09003 * 109.49989 * 298.56263 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1813 0.0000 4 6 3.5981 1.1359 -0.0052 5 6 4.3655 2.3119 -0.0096 6 6 5.7242 2.2293 -0.0140 7 6 6.3668 0.9918 -0.0148 8 6 5.6569 -0.1681 -0.0117 9 6 4.2493 -0.1256 -0.0066 10 7 3.5287 -1.2464 -0.0030 11 6 2.2101 -1.2134 0.0022 12 6 1.4537 -2.4887 0.0056 13 8 0.2433 -2.4768 0.1098 14 7 2.1090 -3.6611 -0.1069 15 6 1.3617 -4.9211 -0.1030 16 6 0.8665 -5.2245 -1.5193 17 6 0.0594 -6.5265 -1.5053 18 7 0.8809 -7.5891 -0.9100 19 6 1.0852 -8.7686 -1.5750 20 1 2.0032 -9.3186 -1.4296 21 6 0.1123 -9.2573 -2.4361 22 7 -1.0969 -8.7377 -2.4256 23 14 0.5192 -10.6523 -3.6098 24 1 1.9364 -11.0562 -3.4263 25 1 -0.3665 -11.8106 -3.3281 26 1 0.3113 -10.1990 -5.0085 27 6 1.4789 -7.3624 0.4128 28 6 2.2731 -6.0529 0.3771 29 1 -0.3633 -0.1181 1.0209 30 1 -0.3633 0.9432 -0.4081 31 1 -0.3634 -0.8250 -0.6126 32 1 1.6676 2.1257 0.0004 33 1 3.8802 3.2767 -0.0086 34 1 6.3128 3.1349 -0.0179 35 1 7.4461 0.9538 -0.0188 36 1 6.1706 -1.1181 -0.0119 37 1 3.0754 -3.6705 -0.1904 38 1 0.5067 -4.8342 0.5674 39 1 1.7218 -5.3337 -2.1861 40 1 0.2342 -4.4082 -1.8687 41 1 -0.2095 -6.8007 -2.5255 42 1 -0.8454 -6.3892 -0.9134 43 1 -1.7769 -9.0795 -3.0271 44 1 0.6910 -7.2915 1.1627 45 1 2.1447 -8.1894 0.6595 46 1 2.6420 -5.8237 1.3769 47 1 3.1153 -6.1569 -0.3069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874440822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:59 Heat of formation + Delta-G solvation = 20.239595 kcal Electronic energy + Delta-G solvation = -28689.520844 eV Core-core repulsion = 24836.630727 eV Total energy + Delta-G solvation = -3852.890117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20108 -40.81593 -39.12189 -37.90140 -36.22813 -35.13896 -33.89059 -32.63891 -31.95332 -31.54305 -30.80441 -28.08392 -27.21107 -26.07709 -23.95025 -23.86083 -23.44334 -23.02125 -21.79021 -21.11752 -19.39790 -18.93523 -18.65159 -17.68606 -17.17146 -16.73920 -16.53753 -16.38846 -15.69811 -15.46083 -15.39606 -15.35725 -15.17349 -14.93648 -14.70959 -14.35318 -14.24802 -14.08450 -13.95502 -13.89235 -13.33104 -13.16190 -12.96211 -12.71676 -12.64319 -12.59590 -12.56786 -12.47849 -12.12564 -12.02550 -11.87282 -11.57825 -11.40771 -11.37217 -11.09079 -10.60794 -10.49206 -10.10919 -9.69920 -9.21311 -8.68629 -7.87510 -5.37637 -0.86430 -0.35809 0.91421 1.37917 1.46506 1.47760 1.58759 1.98634 2.19083 2.50565 2.94188 3.05937 3.29087 3.52407 3.62971 3.67124 3.70883 3.81561 3.88356 4.04261 4.10216 4.21678 4.29792 4.36513 4.40810 4.44744 4.61175 4.64469 4.74856 4.75619 4.80767 4.86147 4.93780 5.00098 5.03982 5.06131 5.08717 5.11479 5.29137 5.30959 5.37921 5.44525 5.46308 5.49066 5.60031 5.63727 5.69531 5.86875 6.36001 6.39793 6.67626 7.11227 7.13531 7.82877 8.36716 9.19440 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.002347 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.292945 B =11928.475894 C =12632.129395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.058 4.058 4 C -0.095 4.095 5 C -0.105 4.105 6 C -0.102 4.102 7 C -0.095 4.095 8 C -0.107 4.107 9 C 0.091 3.909 10 N -0.455 5.455 11 C 0.094 3.906 12 C 0.560 3.440 13 O -0.552 6.552 14 N -0.694 5.694 15 C 0.161 3.839 16 C -0.130 4.130 17 C 0.185 3.815 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.143 3.857 28 C -0.122 4.122 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.414 0.586 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.056 0.944 42 H -0.007 1.007 43 H 0.250 0.750 44 H 0.015 0.985 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.495 27.159 6.325 31.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.084 4.084 4 C -0.097 4.097 5 C -0.123 4.123 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.125 4.125 9 C -0.033 4.033 10 N -0.166 5.166 11 C -0.059 4.059 12 C 0.346 3.654 13 O -0.430 6.430 14 N -0.344 5.344 15 C 0.057 3.943 16 C -0.170 4.170 17 C 0.058 3.942 18 N -0.334 5.334 19 C -0.391 4.391 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.799 3.201 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.018 3.982 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.198 0.802 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.032 26.270 6.323 30.920 hybrid contribution -0.543 -0.521 -0.762 1.072 sum 14.489 25.748 5.561 30.064 Atomic orbital electron populations 1.20973 0.88610 1.03711 1.03364 1.20674 0.98890 0.92312 0.99007 1.21738 0.92455 0.98894 0.95304 1.19291 0.94727 0.95080 1.00606 1.21369 0.94590 0.97222 0.99131 1.21480 0.94677 0.99144 0.96613 1.21355 1.02035 0.91450 0.96666 1.21075 0.90277 1.00889 1.00274 1.19302 0.95225 0.88021 1.00752 1.67719 1.06282 1.32088 1.10536 1.21093 0.90022 0.93581 1.01179 1.18301 0.86655 0.83809 0.76656 1.90734 1.14215 1.86979 1.51035 1.46001 1.11667 1.04867 1.71894 1.20782 0.94685 0.82335 0.96510 1.22327 0.99954 0.98000 0.96756 1.20455 0.90376 0.85399 0.97960 1.44323 1.58848 1.13892 1.16302 1.19583 0.99217 0.99065 1.21212 0.91044 1.25959 0.94575 1.01017 1.03369 1.70183 1.02739 1.45477 1.40053 0.85148 0.78041 0.78643 0.78262 1.18693 1.21885 1.21872 1.21025 0.95071 0.95654 0.86492 1.22141 0.98092 0.94038 1.01922 0.90989 0.89434 0.90924 0.80238 0.82032 0.81862 0.82188 0.84205 0.74890 0.91643 0.92523 0.93302 0.92526 0.98859 0.94130 0.96703 0.91328 0.89315 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 8.69 71.24 0.62 -1.90 16 2 C -0.11 -2.54 5.89 -19.78 -0.12 -2.65 16 3 C -0.06 -1.01 9.50 22.48 0.21 -0.80 16 4 C -0.10 -1.71 5.75 -21.22 -0.12 -1.83 16 5 C -0.10 -1.11 9.77 22.31 0.22 -0.89 16 6 C -0.10 -0.82 9.95 22.07 0.22 -0.60 16 7 C -0.10 -0.98 9.94 22.04 0.22 -0.76 16 8 C -0.11 -1.78 9.99 22.38 0.22 -1.56 16 9 C 0.09 2.03 6.61 40.49 0.27 2.30 16 10 N -0.45 -12.21 9.48 -177.77 -1.69 -13.90 16 11 C 0.09 2.69 6.75 42.29 0.29 2.98 16 12 C 0.56 18.75 7.71 86.91 0.67 19.42 16 13 O -0.55 -21.16 12.88 -3.71 -0.05 -21.21 16 14 N -0.69 -22.10 5.06 -444.84 -2.25 -24.35 16 15 C 0.16 5.89 2.41 45.03 0.11 6.00 16 16 C -0.13 -5.51 5.66 30.68 0.17 -5.33 16 17 C 0.18 9.55 5.26 86.36 0.45 10.01 16 18 N -0.61 -31.51 2.99 -699.10 -2.09 -33.60 16 19 C -0.26 -14.51 9.58 84.03 0.81 -13.71 16 20 H 0.07 3.82 7.86 -2.91 -0.02 3.79 16 21 C -0.05 -3.09 5.00 84.86 0.42 -2.66 16 22 N -0.94 -57.26 11.11 21.65 0.24 -57.02 16 23 Si 0.97 45.61 29.57 68.60 2.03 47.64 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C 0.14 5.99 6.52 86.36 0.56 6.55 16 28 C -0.12 -4.11 5.55 30.67 0.17 -3.94 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 31 H 0.07 2.14 5.79 -2.39 -0.01 2.12 16 32 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 35 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.41 11.64 7.92 -92.71 -0.73 10.91 16 38 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 3.29 6.10 -2.38 -0.01 3.27 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 43 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 2.70 7.93 -2.38 -0.02 2.68 16 46 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -73.46 379.74 1.85 -71.62 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.26 Total: 20.19 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.40 Total: 10.63 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.79 Total: -128.86 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.46 1.85 -71.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874440822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.859 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds