Wall clock time and date at job start Tue Mar 31 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38049 * 126.29157 * 2 1 4 4 C 1.47427 * 126.41277 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00184 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99752 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99635 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.68035 * 35.51460 * 7 6 4 9 9 C 1.53328 * 109.68068 * 156.06825 * 7 6 4 10 10 C 1.52754 * 108.35949 * 189.64356 * 9 7 6 11 11 C 1.50632 * 110.57308 * 308.87158 * 10 9 7 12 12 C 1.38911 * 117.74535 * 197.52272 * 11 10 9 13 13 C 1.37933 * 120.54884 * 180.33450 * 12 11 10 14 14 C 1.38266 * 119.76581 * 359.97438 * 13 12 11 15 15 C 1.37935 * 119.77465 * 359.89172 * 14 13 12 16 16 C 1.37667 * 122.57057 * 17.63729 * 11 10 9 17 17 C 1.50634 * 122.56918 * 359.57742 * 16 11 10 18 18 C 1.41291 * 107.17084 * 180.24193 * 3 2 1 19 19 N 1.30446 * 108.02170 * 359.61951 * 18 3 2 20 20 N 1.34263 * 126.29428 * 180.02562 * 2 1 3 21 21 C 1.46496 * 125.75035 * 0.02562 * 20 2 1 22 22 C 1.50694 * 109.47009 * 89.99998 * 21 20 2 23 23 H 1.08005 * 120.00463 * 0.02562 * 22 21 20 24 24 C 1.37882 * 120.00331 * 179.97438 * 22 21 20 25 25 N 1.31517 * 119.99830 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00412 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47045 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.47246 * 120.00306 * 26 24 22 29 29 H 1.48507 * 109.47162 * 240.00216 * 26 24 22 30 30 H 1.09007 * 109.46903 * 89.97625 * 1 2 3 31 31 H 1.09000 * 109.47021 * 209.97397 * 1 2 3 32 32 H 1.09003 * 109.47300 * 329.97810 * 1 2 3 33 33 H 0.96995 * 120.00015 * 359.72347 * 6 4 3 34 34 H 1.08998 * 109.68144 * 309.35422 * 9 7 6 35 35 H 1.09009 * 109.68052 * 69.90487 * 9 7 6 36 36 H 1.09002 * 109.25704 * 188.59122 * 10 9 7 37 37 H 1.08996 * 109.22118 * 69.13360 * 10 9 7 38 38 H 1.08001 * 119.72663 * 0.30884 * 12 11 10 39 39 H 1.07988 * 120.11783 * 179.97438 * 13 12 11 40 40 H 1.08003 * 120.11140 * 179.89734 * 14 13 12 41 41 H 1.08004 * 119.72628 * 180.02562 * 15 14 13 42 42 H 1.08995 * 109.25167 * 257.22151 * 17 16 11 43 43 H 1.08998 * 109.21675 * 137.77964 * 17 16 11 44 44 H 1.08002 * 125.98950 * 179.73707 * 18 3 2 45 45 H 1.09000 * 109.47092 * 209.99811 * 21 20 2 46 46 H 1.09003 * 109.47498 * 329.99782 * 21 20 2 47 47 H 0.97000 * 120.00365 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0015 6 7 2.8000 3.5107 0.0001 7 6 2.3644 4.9094 -0.0010 8 1 1.4570 5.0118 0.5941 9 6 3.4701 5.7951 0.5855 10 6 2.9028 7.1978 0.7947 11 6 2.2395 7.6936 -0.4635 12 6 2.0045 9.0581 -0.5762 13 6 1.3943 9.5739 -1.7005 14 6 1.0135 8.7267 -2.7247 15 6 1.2485 7.3718 -2.6160 16 6 1.8640 6.8506 -1.4850 17 6 2.0935 5.3627 -1.4342 18 6 3.6590 0.6499 -0.0057 19 7 3.6340 -0.6543 -0.0006 20 7 2.3017 -1.0821 -0.0005 21 6 1.8501 -2.4758 -0.0016 22 6 1.6958 -2.9526 -1.4228 23 1 1.9128 -2.2845 -2.2432 24 6 1.2785 -4.2421 -1.6759 25 7 1.0146 -5.0559 -0.6770 26 14 1.0879 -4.8334 -3.4376 27 1 1.4447 -3.7342 -4.3700 28 1 1.9874 -5.9915 -3.6711 29 1 -0.3197 -5.2447 -3.6721 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 3.7461 3.2974 0.0049 34 1 3.8001 5.3862 1.5405 35 1 4.3115 5.8382 -0.1063 36 1 3.7119 7.8761 1.0658 37 1 2.1701 7.1719 1.6012 38 1 2.3016 9.7205 0.2234 39 1 1.2146 10.6357 -1.7806 40 1 0.5338 9.1244 -3.6068 41 1 0.9511 6.7108 -3.4166 42 1 2.9498 5.1095 -2.0592 43 1 1.2088 4.8501 -1.8120 44 1 4.5449 1.2677 -0.0112 45 1 2.5846 -3.0961 0.5120 46 1 0.8913 -2.5475 0.5118 47 1 0.7207 -5.9630 -0.8550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887719119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:42 Heat of formation + Delta-G solvation = 37.101347 kcal Electronic energy + Delta-G solvation = -28193.365373 eV Core-core repulsion = 24341.206437 eV Total energy + Delta-G solvation = -3852.158936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83798 -40.32679 -38.76234 -36.42084 -33.96643 -33.54055 -32.53649 -32.02011 -31.12901 -29.90420 -28.74052 -27.19052 -26.58177 -24.12154 -23.49442 -22.77933 -22.35469 -21.67527 -19.96692 -19.72455 -18.85244 -17.10090 -16.79696 -16.66185 -16.11793 -15.83674 -15.17077 -14.95027 -14.76333 -14.49082 -14.44214 -14.05408 -13.92290 -13.74646 -13.42757 -13.25189 -12.97057 -12.85254 -12.62476 -12.44412 -12.39466 -12.09943 -11.80661 -11.76919 -11.68981 -11.47449 -11.16072 -11.10619 -10.97585 -10.91129 -10.77595 -10.37551 -10.17227 -9.91567 -9.37909 -8.98797 -8.95521 -8.73528 -8.71983 -8.58461 -7.90924 -6.34200 -4.41819 1.15458 1.17002 2.19734 2.79981 3.15588 3.16550 3.24686 3.30905 3.53571 3.54817 3.91891 4.23945 4.36352 4.48701 4.66272 4.75086 4.80246 4.89677 4.96536 4.99852 5.11232 5.12666 5.25022 5.31181 5.32658 5.34838 5.55540 5.57102 5.64238 5.68104 5.75288 5.77965 5.82174 5.91224 6.02765 6.07554 6.13392 6.27410 6.30511 6.42832 6.46706 6.56914 6.65974 6.80217 6.81755 6.90785 7.16352 7.56031 7.75355 7.76916 7.80022 8.38230 8.62125 8.64920 9.25084 10.74058 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.002152 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.787165 B =13007.652614 C =13710.029205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.605 3.395 5 O -0.555 6.555 6 N -0.731 5.731 7 C 0.153 3.847 8 H 0.091 0.909 9 C -0.128 4.128 10 C -0.076 4.076 11 C -0.080 4.080 12 C -0.121 4.121 13 C -0.126 4.126 14 C -0.123 4.123 15 C -0.118 4.118 16 C -0.065 4.065 17 C -0.095 4.095 18 C 0.057 3.943 19 N -0.296 5.296 20 N -0.314 5.314 21 C 0.251 3.749 22 C -0.539 4.539 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.175 0.825 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 26.096 1.543 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.395 3.605 5 O -0.434 6.434 6 N -0.383 5.383 7 C 0.048 3.952 8 H 0.109 0.891 9 C -0.166 4.166 10 C -0.113 4.113 11 C -0.080 4.080 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.141 4.141 15 C -0.136 4.136 16 C -0.066 4.066 17 C -0.133 4.133 18 C -0.130 4.130 19 N -0.116 5.116 20 N -0.091 5.091 21 C 0.133 3.867 22 C -0.577 4.577 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.232 0.768 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.192 0.808 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.036 24.811 1.606 25.048 hybrid contribution -0.016 0.202 -1.096 1.115 sum 3.020 25.013 0.510 25.200 Atomic orbital electron populations 1.20568 0.86834 1.03762 1.03903 1.21485 0.94954 0.86558 0.94224 1.19681 0.93109 0.92527 1.29548 1.17327 0.85054 0.83903 0.74186 1.90692 1.16700 1.84428 1.51559 1.45770 1.09742 1.05083 1.77663 1.20768 0.98351 0.80296 0.95830 0.89141 1.21849 0.98062 0.94716 1.01926 1.20420 0.99812 0.96069 0.95036 1.19628 0.99450 0.93177 0.95780 1.21126 0.99964 0.94610 0.98160 1.21041 0.99503 0.99595 0.94250 1.21067 1.00383 0.93614 0.98992 1.21203 0.99207 0.95488 0.97741 1.19587 0.98011 0.95118 0.93875 1.20921 1.03195 0.91132 0.98018 1.23713 0.96332 0.92618 1.00298 1.77134 0.98637 1.12295 1.23533 1.49362 1.02476 1.08297 1.48935 1.19856 0.96412 0.70943 0.99455 1.21283 1.47287 0.98116 0.91009 0.91626 1.24932 0.94476 0.96009 0.98314 1.69922 1.44575 1.07127 1.31077 0.86268 0.77967 0.78838 0.83451 1.19534 1.20572 1.20538 0.89868 0.90911 0.88817 0.76796 0.90439 0.90972 0.90327 0.90256 0.86273 0.86277 0.86203 0.86100 0.90291 0.89842 0.80799 0.92521 0.92554 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.00 0.34 -1.33 16 2 C 0.17 3.35 7.01 -81.60 -0.57 2.77 16 3 C -0.33 -5.99 6.13 -105.07 -0.64 -6.63 16 4 C 0.60 9.76 7.78 -12.52 -0.10 9.66 16 5 O -0.55 -10.35 14.52 5.28 0.08 -10.28 16 6 N -0.73 -8.58 5.09 -54.85 -0.28 -8.86 16 7 C 0.15 1.60 2.47 -67.90 -0.17 1.43 16 8 H 0.09 1.13 7.56 -51.93 -0.39 0.74 16 9 C -0.13 -0.97 5.46 -26.69 -0.15 -1.11 16 10 C -0.08 -0.55 5.67 -28.04 -0.16 -0.71 16 11 C -0.08 -0.74 5.74 -104.61 -0.60 -1.34 16 12 C -0.12 -1.00 9.61 -39.44 -0.38 -1.38 16 13 C -0.13 -1.03 10.05 -39.68 -0.40 -1.43 16 14 C -0.12 -1.07 10.05 -39.68 -0.40 -1.47 16 15 C -0.12 -1.16 9.61 -39.44 -0.38 -1.54 16 16 C -0.07 -0.67 5.74 -104.61 -0.60 -1.27 16 17 C -0.09 -1.01 5.25 -28.05 -0.15 -1.16 16 18 C 0.06 0.98 11.50 -16.98 -0.20 0.79 16 19 N -0.30 -6.32 12.50 30.86 0.39 -5.93 16 20 N -0.31 -7.07 3.56 -57.78 -0.21 -7.27 16 21 C 0.25 6.23 5.97 -5.20 -0.03 6.20 16 22 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 23 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 24 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 26 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 31 H 0.07 1.28 7.05 -51.93 -0.37 0.92 16 32 H 0.09 1.62 6.50 -51.93 -0.34 1.28 16 33 H 0.40 3.70 7.55 -40.82 -0.31 3.39 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.50 8.10 -51.92 -0.42 0.08 16 36 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.12 0.75 8.05 -52.49 -0.42 0.32 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.12 1.08 8.05 -52.48 -0.42 0.65 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.06 8.12 -51.93 -0.42 0.63 16 44 H 0.18 2.10 7.50 -52.49 -0.39 1.70 16 45 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -31.36 388.84 -10.22 -41.57 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.78 Total: 4.61 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.99 Total: -11.66 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.64 Total: -45.91 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.36 -10.22 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887719119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.673 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds