Wall clock time and date at job start Tue Mar 31 2020 22:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38037 * 126.29393 * 2 1 4 4 C 1.47431 * 126.41200 * 359.95936 * 3 2 1 5 5 O 1.21603 * 119.99915 * 303.22743 * 4 3 2 6 6 N 1.34771 * 120.00275 * 123.23697 * 4 3 2 7 7 C 1.43853 * 117.71362 * 4.07245 * 6 4 3 8 8 C 1.50925 * 111.15455 * 263.61029 * 7 6 4 9 9 C 1.52325 * 111.74385 * 300.27067 * 8 7 6 10 10 C 1.41538 * 108.82448 * 221.92409 * 9 8 7 11 11 C 1.37048 * 121.90381 * 180.02562 * 10 9 8 12 12 C 1.38352 * 118.79945 * 0.02562 * 11 10 9 13 13 C 1.37040 * 118.79869 * 0.04105 * 12 11 10 14 14 C 1.31878 * 131.87750 * 41.96817 * 9 8 7 15 15 C 1.52317 * 131.87780 * 359.97125 * 14 9 8 16 16 C 1.43848 * 117.71800 * 184.34164 * 6 4 3 17 17 C 1.41285 * 107.17134 * 179.97438 * 3 2 1 18 18 N 1.30445 * 108.02321 * 0.22855 * 17 3 2 19 19 N 1.34265 * 126.28798 * 179.97438 * 2 1 3 20 20 C 1.46504 * 125.75518 * 0.02562 * 19 2 1 21 21 C 1.50702 * 109.46591 * 90.00435 * 20 19 2 22 22 H 1.07999 * 119.99972 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99668 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00218 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99785 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47332 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47179 * 120.00227 * 25 23 21 28 28 H 1.48504 * 109.47182 * 240.00027 * 25 23 21 29 29 H 1.09002 * 109.47463 * 90.00017 * 1 2 3 30 30 H 1.09008 * 109.47218 * 210.00087 * 1 2 3 31 31 H 1.09002 * 109.47322 * 329.99951 * 1 2 3 32 32 H 1.09001 * 109.19851 * 23.87201 * 7 6 4 33 33 H 1.09008 * 109.19938 * 143.15849 * 7 6 4 34 34 H 1.08996 * 109.09415 * 179.65014 * 8 7 6 35 35 H 1.08998 * 108.97906 * 60.81233 * 8 7 6 36 36 H 1.08001 * 119.04837 * 0.03065 * 10 9 8 37 37 H 1.07998 * 120.59721 * 179.97438 * 11 10 9 38 38 H 1.07996 * 120.60006 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.05299 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.02163 * 197.38678 * 15 14 9 41 41 H 1.09007 * 109.02135 * 78.57768 * 15 14 9 42 42 H 1.08999 * 109.19842 * 216.83442 * 16 6 4 43 43 H 1.08992 * 109.20068 * 336.17665 * 16 6 4 44 44 H 1.08006 * 125.98673 * 179.97438 * 17 3 2 45 45 H 1.08997 * 109.47186 * 210.00274 * 20 19 2 46 46 H 1.08994 * 109.47414 * 330.00612 * 20 19 2 47 47 H 0.96989 * 120.00026 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 -0.0008 5 8 1.1546 2.9288 -0.8824 6 7 2.2957 3.3542 0.9752 7 6 3.2305 2.8441 1.9423 8 6 2.5217 2.3690 3.1871 9 6 1.7360 3.4917 3.8524 10 6 1.9198 3.4098 5.2534 11 6 1.3280 4.2965 6.1146 12 6 0.5283 5.2983 5.5941 13 6 0.3563 5.3673 4.2363 14 6 0.9740 4.4468 3.3562 15 6 0.5850 4.7974 1.9259 16 6 1.7633 4.6906 0.9808 17 6 3.6590 0.6497 0.0006 18 7 3.6339 -0.6545 -0.0040 19 7 2.3016 -1.0822 0.0005 20 6 1.8500 -2.4759 0.0006 21 6 1.6957 -2.9540 -1.4203 22 1 1.9121 -2.2863 -2.2411 23 6 1.2784 -4.2437 -1.6722 24 7 1.0145 -5.0566 -0.6725 25 14 1.0880 -4.8365 -3.4333 26 1 1.4450 -3.7381 -4.3667 27 1 1.9876 -5.9949 -3.6657 28 1 -0.3195 -5.2480 -3.6676 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.7781 2.0089 1.5055 33 1 3.9344 3.6320 2.2107 34 1 3.2586 1.9848 3.8924 35 1 1.8355 1.5655 2.9195 36 1 2.5446 2.6259 5.6554 37 1 1.4824 4.2141 7.1803 38 1 0.0481 6.0129 6.2461 39 1 -0.2668 6.1480 3.8256 40 1 0.2017 5.8175 1.9018 41 1 -0.1993 4.1169 1.5941 42 1 2.5413 5.3850 1.2979 43 1 1.4389 4.9513 -0.0266 44 1 4.5449 1.2675 0.0004 45 1 2.5843 -3.0958 0.5148 46 1 0.8911 -2.5471 0.5139 47 1 0.7206 -5.9637 -0.8498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889016554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:31 Heat of formation + Delta-G solvation = 72.241559 kcal Electronic energy + Delta-G solvation = -29513.917440 eV Core-core repulsion = 25663.282298 eV Total energy + Delta-G solvation = -3850.635142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13976 -40.20227 -38.94530 -36.17728 -34.15204 -33.72219 -32.57050 -32.10596 -31.23177 -29.95622 -28.02334 -27.19264 -26.60154 -24.76991 -23.68241 -23.16395 -22.67799 -21.00850 -20.00918 -19.68787 -18.38068 -17.19450 -16.81085 -16.45492 -16.20318 -15.80459 -15.47686 -15.27033 -14.62704 -14.54281 -14.37805 -14.04692 -13.98868 -13.42164 -13.35125 -13.11756 -12.88726 -12.75422 -12.52317 -12.34721 -12.17340 -12.09765 -11.91931 -11.68407 -11.66690 -11.52488 -11.46620 -11.13455 -11.04879 -10.91743 -10.45031 -10.33069 -10.25859 -9.88663 -9.42888 -9.06744 -8.82611 -8.71016 -8.56942 -8.47570 -7.82529 -6.33333 -4.40742 1.17255 1.36124 2.35870 2.79159 3.07472 3.17719 3.25865 3.29840 3.38702 3.59508 3.62458 4.25376 4.31402 4.57656 4.75783 4.81972 4.87805 5.01852 5.06204 5.14337 5.15060 5.18209 5.19929 5.33981 5.40638 5.42684 5.56038 5.59802 5.60264 5.74898 5.77377 5.83745 5.88253 5.95932 5.97887 6.02942 6.07143 6.31698 6.35301 6.36392 6.47162 6.53462 6.78038 6.84030 6.90367 6.91429 7.16696 7.53819 7.57862 7.77896 7.80330 8.39390 8.49959 8.65916 9.26448 10.74793 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002796 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.750432 B =10010.173502 C =10448.301347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.146 3.854 3 C -0.323 4.323 4 C 0.600 3.400 5 O -0.542 6.542 6 N -0.599 5.599 7 C 0.109 3.891 8 C -0.098 4.098 9 C -0.060 4.060 10 C -0.127 4.127 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.129 4.129 14 C -0.063 4.063 15 C -0.096 4.096 16 C 0.118 3.882 17 C 0.052 3.948 18 N -0.291 5.291 19 N -0.312 5.312 20 C 0.252 3.748 21 C -0.539 4.539 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.907 3.093 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.177 0.823 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 19.807 12.099 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.339 4.339 4 C 0.389 3.611 5 O -0.418 6.418 6 N -0.331 5.331 7 C -0.015 4.015 8 C -0.136 4.136 9 C -0.060 4.060 10 C -0.145 4.145 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.063 4.063 15 C -0.134 4.134 16 C -0.006 4.006 17 C -0.134 4.134 18 N -0.112 5.112 19 N -0.090 5.090 20 C 0.135 3.865 21 C -0.577 4.577 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.734 3.266 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.194 0.806 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.098 18.608 11.702 22.010 hybrid contribution -0.580 0.261 -0.583 0.863 sum 0.518 18.869 11.119 21.908 Atomic orbital electron populations 1.20412 0.87385 1.02797 1.03985 1.21224 0.94479 0.86538 0.96740 1.19583 0.93560 0.92326 1.28407 1.17722 0.78542 0.84554 0.80252 1.90714 1.37368 1.77178 1.36577 1.46460 1.46041 1.12303 1.28339 1.20854 0.91277 1.00533 0.88855 1.21101 0.99116 0.96026 0.97336 1.18741 0.97481 0.95902 0.93876 1.22076 1.00211 0.99158 0.93059 1.20978 0.98119 0.95860 0.99546 1.20964 0.99313 0.98828 0.95428 1.22033 0.99885 0.99126 0.93641 1.18708 0.96930 0.94824 0.95851 1.21170 0.99141 1.02173 0.90920 1.20572 0.95560 0.83442 1.00977 1.23591 0.95938 0.92387 1.01470 1.77129 0.98595 1.12044 1.23455 1.49261 1.02338 1.08101 1.49268 1.19823 0.96285 0.70999 0.99385 1.21314 1.47163 0.98099 0.91122 0.91565 1.24919 0.94465 0.96010 0.98272 1.69918 1.44700 1.07146 1.31047 0.86283 0.77942 0.78867 0.83547 1.19471 1.20577 1.20567 0.89503 0.90481 0.90971 0.88070 0.91250 0.89677 0.90248 0.86291 0.86256 0.86301 0.86439 0.89826 0.90458 0.91300 0.88719 0.80598 0.92556 0.92711 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.93 36.01 0.36 -1.16 16 2 C 0.15 2.87 7.01 -81.60 -0.57 2.30 16 3 C -0.32 -5.75 5.05 -105.07 -0.53 -6.28 16 4 C 0.60 9.87 7.06 -12.52 -0.09 9.78 16 5 O -0.54 -10.48 16.31 5.27 0.09 -10.40 16 6 N -0.60 -7.60 2.43 -181.32 -0.44 -8.04 16 7 C 0.11 1.17 5.44 -6.49 -0.04 1.14 16 8 C -0.10 -1.05 5.69 -28.12 -0.16 -1.21 16 9 C -0.06 -0.65 5.64 -104.46 -0.59 -1.24 16 10 C -0.13 -1.26 9.24 -38.76 -0.36 -1.62 16 11 C -0.13 -1.16 10.07 -39.97 -0.40 -1.56 16 12 C -0.13 -1.14 10.07 -39.97 -0.40 -1.54 16 13 C -0.13 -1.22 9.24 -38.76 -0.36 -1.58 16 14 C -0.06 -0.67 5.65 -104.46 -0.59 -1.26 16 15 C -0.10 -0.97 5.70 -27.87 -0.16 -1.13 16 16 C 0.12 1.28 5.72 -6.24 -0.04 1.24 16 17 C 0.05 0.89 9.81 -16.98 -0.17 0.72 16 18 N -0.29 -6.12 12.50 30.86 0.39 -5.73 16 19 N -0.31 -6.87 3.56 -57.77 -0.21 -7.08 16 20 C 0.25 6.18 5.97 -5.19 -0.03 6.15 16 21 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 22 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 25 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.08 1.30 7.05 -51.92 -0.37 0.93 16 31 H 0.07 1.12 7.96 -51.93 -0.41 0.70 16 32 H 0.10 1.15 3.93 -51.93 -0.20 0.95 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.08 0.77 7.17 -51.93 -0.37 0.39 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 1.00 7.32 -52.49 -0.38 0.62 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.89 7.32 -52.49 -0.38 0.51 16 40 H 0.08 0.65 7.17 -51.93 -0.37 0.28 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.13 6.92 -51.93 -0.36 0.77 16 44 H 0.18 2.32 7.43 -52.48 -0.39 1.93 16 45 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.06 1.33 7.01 -51.93 -0.36 0.96 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -31.18 381.47 -9.79 -40.98 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.54 Total: 2.77 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -4.54 Total: -10.37 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.48 Total: -44.62 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.18 -9.79 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889016554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.218 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds