Wall clock time and date at job start Tue Mar 31 2020 22:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38037 * 126.29393 * 2 1 4 4 C 1.47431 * 126.41200 * 359.95936 * 3 2 1 5 5 O 1.21603 * 119.99915 * 303.22743 * 4 3 2 6 6 N 1.34771 * 120.00275 * 123.23697 * 4 3 2 7 7 C 1.43853 * 117.71362 * 4.07245 * 6 4 3 8 8 C 1.50925 * 111.15455 * 263.61029 * 7 6 4 9 9 C 1.52325 * 111.74385 * 300.27067 * 8 7 6 10 10 C 1.41538 * 108.82448 * 221.92409 * 9 8 7 11 11 C 1.37048 * 121.90381 * 180.02562 * 10 9 8 12 12 C 1.38352 * 118.79945 * 0.02562 * 11 10 9 13 13 C 1.37040 * 118.79869 * 0.04105 * 12 11 10 14 14 C 1.31878 * 131.87750 * 41.96817 * 9 8 7 15 15 C 1.52317 * 131.87780 * 359.97125 * 14 9 8 16 16 C 1.43848 * 117.71800 * 184.34164 * 6 4 3 17 17 C 1.41285 * 107.17134 * 179.97438 * 3 2 1 18 18 N 1.30445 * 108.02321 * 0.22855 * 17 3 2 19 19 N 1.34265 * 126.28798 * 179.97438 * 2 1 3 20 20 C 1.46504 * 125.75518 * 0.02562 * 19 2 1 21 21 C 1.50702 * 109.46591 * 90.00435 * 20 19 2 22 22 H 1.07999 * 119.99972 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99668 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00218 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99785 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47332 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47179 * 120.00227 * 25 23 21 28 28 H 1.48504 * 109.47182 * 240.00027 * 25 23 21 29 29 H 1.09002 * 109.47463 * 90.00017 * 1 2 3 30 30 H 1.09008 * 109.47218 * 210.00087 * 1 2 3 31 31 H 1.09002 * 109.47322 * 329.99951 * 1 2 3 32 32 H 1.09001 * 109.19851 * 23.87201 * 7 6 4 33 33 H 1.09008 * 109.19938 * 143.15849 * 7 6 4 34 34 H 1.08996 * 109.09415 * 179.65014 * 8 7 6 35 35 H 1.08998 * 108.97906 * 60.81233 * 8 7 6 36 36 H 1.08001 * 119.04837 * 0.03065 * 10 9 8 37 37 H 1.07998 * 120.59721 * 179.97438 * 11 10 9 38 38 H 1.07996 * 120.60006 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.05299 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.02163 * 197.38678 * 15 14 9 41 41 H 1.09007 * 109.02135 * 78.57768 * 15 14 9 42 42 H 1.08999 * 109.19842 * 216.83442 * 16 6 4 43 43 H 1.08992 * 109.20068 * 336.17665 * 16 6 4 44 44 H 1.08006 * 125.98673 * 179.97438 * 17 3 2 45 45 H 1.08997 * 109.47186 * 210.00274 * 20 19 2 46 46 H 1.08994 * 109.47414 * 330.00612 * 20 19 2 47 47 H 0.96989 * 120.00026 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 -0.0008 5 8 1.1546 2.9288 -0.8824 6 7 2.2957 3.3542 0.9752 7 6 3.2305 2.8441 1.9423 8 6 2.5217 2.3690 3.1871 9 6 1.7360 3.4917 3.8524 10 6 1.9198 3.4098 5.2534 11 6 1.3280 4.2965 6.1146 12 6 0.5283 5.2983 5.5941 13 6 0.3563 5.3673 4.2363 14 6 0.9740 4.4468 3.3562 15 6 0.5850 4.7974 1.9259 16 6 1.7633 4.6906 0.9808 17 6 3.6590 0.6497 0.0006 18 7 3.6339 -0.6545 -0.0040 19 7 2.3016 -1.0822 0.0005 20 6 1.8500 -2.4759 0.0006 21 6 1.6957 -2.9540 -1.4203 22 1 1.9121 -2.2863 -2.2411 23 6 1.2784 -4.2437 -1.6722 24 7 1.0145 -5.0566 -0.6725 25 14 1.0880 -4.8365 -3.4333 26 1 1.4450 -3.7381 -4.3667 27 1 1.9876 -5.9949 -3.6657 28 1 -0.3195 -5.2480 -3.6676 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.7781 2.0089 1.5055 33 1 3.9344 3.6320 2.2107 34 1 3.2586 1.9848 3.8924 35 1 1.8355 1.5655 2.9195 36 1 2.5446 2.6259 5.6554 37 1 1.4824 4.2141 7.1803 38 1 0.0481 6.0129 6.2461 39 1 -0.2668 6.1480 3.8256 40 1 0.2017 5.8175 1.9018 41 1 -0.1993 4.1169 1.5941 42 1 2.5413 5.3850 1.2979 43 1 1.4389 4.9513 -0.0266 44 1 4.5449 1.2675 0.0004 45 1 2.5843 -3.0958 0.5148 46 1 0.8911 -2.5471 0.5139 47 1 0.7206 -5.9637 -0.8498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889016554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:30 Heat of formation + Delta-G solvation = 56.278147 kcal Electronic energy + Delta-G solvation = -29514.609666 eV Core-core repulsion = 25663.282298 eV Total energy + Delta-G solvation = -3851.327368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50644 -41.25879 -39.99150 -37.28419 -35.83019 -34.79884 -33.87097 -33.37526 -32.74766 -30.81221 -29.34562 -28.64560 -27.96809 -25.78700 -25.21958 -24.48071 -23.38569 -22.31394 -21.25142 -20.67226 -19.69696 -18.85170 -18.41072 -17.54806 -17.18228 -16.90567 -16.62495 -16.37840 -16.11206 -15.88350 -15.52344 -15.34361 -15.01667 -14.89097 -14.37201 -14.14158 -14.04367 -13.91714 -13.76044 -13.71478 -13.57440 -13.42351 -13.13002 -12.95013 -12.86369 -12.73903 -12.68568 -12.47807 -12.32938 -12.23311 -11.92366 -11.82443 -11.75837 -11.22262 -10.78884 -10.76242 -10.20742 -9.93162 -9.54474 -9.52018 -9.26615 -8.38040 -6.53912 0.46665 0.62640 0.84849 1.34988 1.35787 1.39291 1.49134 1.69534 1.91754 2.31835 2.36827 2.90138 2.93850 3.53996 3.64230 3.72339 3.85081 4.01857 4.05378 4.14010 4.19149 4.26956 4.32739 4.37175 4.42665 4.49644 4.53081 4.56906 4.62577 4.71575 4.78894 4.86504 4.88515 4.92259 4.93287 4.95332 5.02823 5.08149 5.16967 5.20426 5.29426 5.49771 5.64245 5.66461 5.67538 5.75532 5.76101 5.88634 6.08004 6.20080 6.39631 6.55960 6.86650 7.17261 7.25217 8.69581 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002796 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.750432 B =10010.173502 C =10448.301347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.129 3.871 3 C -0.318 4.318 4 C 0.601 3.399 5 O -0.576 6.576 6 N -0.585 5.585 7 C 0.105 3.895 8 C -0.093 4.093 9 C -0.076 4.076 10 C -0.139 4.139 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.136 4.136 14 C -0.078 4.078 15 C -0.090 4.090 16 C 0.114 3.886 17 C 0.072 3.928 18 N -0.329 5.329 19 N -0.336 5.336 20 C 0.270 3.730 21 C -0.555 4.555 22 H 0.048 0.952 23 C 0.026 3.974 24 N -0.915 5.915 25 Si 0.968 3.032 26 H -0.275 1.275 27 H -0.272 1.272 28 H -0.268 1.268 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.220 0.780 45 H 0.033 0.967 46 H 0.051 0.949 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 21.941 12.935 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.005 4.005 3 C -0.333 4.333 4 C 0.390 3.610 5 O -0.456 6.456 6 N -0.315 5.315 7 C -0.018 4.018 8 C -0.131 4.131 9 C -0.077 4.077 10 C -0.157 4.157 11 C -0.149 4.149 12 C -0.149 4.149 13 C -0.154 4.154 14 C -0.078 4.078 15 C -0.128 4.128 16 C -0.009 4.009 17 C -0.113 4.113 18 N -0.149 5.149 19 N -0.114 5.114 20 C 0.151 3.849 21 C -0.593 4.593 22 H 0.066 0.934 23 C -0.176 4.176 24 N -0.553 5.553 25 Si 0.793 3.207 26 H -0.200 1.200 27 H -0.198 1.198 28 H -0.193 1.193 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.236 0.764 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.521 20.769 12.581 24.330 hybrid contribution -0.677 -0.264 -0.724 1.026 sum 0.844 20.506 11.857 23.702 Atomic orbital electron populations 1.20413 0.86350 1.03553 1.03757 1.21687 0.95468 0.86587 0.96736 1.19823 0.93627 0.92848 1.27038 1.17559 0.78437 0.84243 0.80808 1.90701 1.39040 1.77578 1.38262 1.46497 1.45297 1.12457 1.27261 1.21015 0.91212 1.01269 0.88281 1.21050 0.98956 0.95365 0.97704 1.18840 0.98185 0.96113 0.94513 1.22247 1.00780 0.99841 0.92844 1.21292 0.97593 0.95485 1.00560 1.21296 0.98926 0.99032 0.95631 1.22258 0.99884 0.99284 0.93935 1.18849 0.97392 0.95371 0.96213 1.21138 0.98034 1.03094 0.90526 1.20760 0.96730 0.82588 1.00777 1.24259 0.97128 0.91438 0.98514 1.77079 0.98369 1.13995 1.25472 1.48977 1.03183 1.07540 1.51664 1.19324 0.95279 0.72444 0.97852 1.21435 1.47749 0.98396 0.91746 0.93370 1.25679 0.93880 0.95956 1.02076 1.69988 1.44946 1.07585 1.32824 0.85347 0.78494 0.78157 0.78746 1.20011 1.19759 1.19290 0.90117 0.90534 0.89334 0.88664 0.88358 0.87983 0.93065 0.85318 0.84355 0.84129 0.84677 0.87292 0.92744 0.88608 0.89833 0.76404 0.94939 0.93143 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.95 9.93 71.24 0.71 -2.25 16 2 C 0.13 5.22 7.01 42.14 0.30 5.52 16 3 C -0.32 -11.29 5.05 -20.15 -0.10 -11.39 16 4 C 0.60 19.44 7.06 86.67 0.61 20.05 16 5 O -0.58 -22.30 16.31 -4.04 -0.07 -22.37 16 6 N -0.59 -13.96 2.43 -845.83 -2.06 -16.02 16 7 C 0.11 2.05 5.44 86.20 0.47 2.52 16 8 C -0.09 -1.88 5.69 29.70 0.17 -1.71 16 9 C -0.08 -1.55 5.64 -19.35 -0.11 -1.65 16 10 C -0.14 -2.50 9.24 22.80 0.21 -2.29 16 11 C -0.13 -2.08 10.07 22.02 0.22 -1.85 16 12 C -0.13 -1.98 10.07 22.02 0.22 -1.76 16 13 C -0.14 -2.23 9.24 22.80 0.21 -2.02 16 14 C -0.08 -1.52 5.65 -19.35 -0.11 -1.63 16 15 C -0.09 -1.67 5.70 29.85 0.17 -1.50 16 16 C 0.11 2.26 5.72 86.36 0.49 2.75 16 17 C 0.07 2.43 9.81 85.65 0.84 3.27 16 18 N -0.33 -14.00 12.50 -56.28 -0.70 -14.70 16 19 N -0.34 -15.29 3.56 -336.70 -1.20 -16.49 16 20 C 0.27 13.81 5.97 85.63 0.51 14.32 16 21 C -0.56 -30.84 9.39 25.60 0.24 -30.59 16 22 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 23 C 0.03 1.39 5.46 84.65 0.46 1.85 16 24 N -0.92 -51.09 13.29 21.45 0.28 -50.80 16 25 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.08 2.69 7.05 -2.38 -0.02 2.68 16 31 H 0.09 2.81 7.96 -2.39 -0.02 2.79 16 32 H 0.10 1.97 3.93 -2.39 -0.01 1.96 16 33 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.10 1.68 7.17 -2.39 -0.02 1.66 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.13 1.94 7.32 -2.91 -0.02 1.92 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.65 7.32 -2.91 -0.02 1.63 16 40 H 0.11 1.43 7.17 -2.39 -0.02 1.42 16 41 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.89 6.92 -2.39 -0.02 1.88 16 44 H 0.22 5.18 7.43 -2.91 -0.02 5.16 16 45 H 0.03 1.78 8.14 -2.39 -0.02 1.77 16 46 H 0.05 2.57 7.01 -2.39 -0.02 2.56 16 47 H 0.27 14.26 8.31 -92.72 -0.77 13.49 16 Total: -1.00 -68.77 381.47 4.79 -63.98 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.99 Total: 19.55 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.51 Total: -8.36 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -3.68 Total: -98.01 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.07 Total: -22.37 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.77 4.79 -63.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889016554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.260 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds