Wall clock time and date at job start Tue Mar 31 2020 22:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31884 * 119.62134 * 2 1 4 4 C 1.31854 * 121.72904 * 180.31430 * 3 2 1 5 5 C 1.38230 * 120.76293 * 359.69869 * 4 3 2 6 6 C 1.38624 * 119.15996 * 0.02562 * 5 4 3 7 7 C 1.38191 * 119.61843 * 179.73345 * 2 1 3 8 8 C 1.50696 * 120.41578 * 359.97038 * 7 2 1 9 9 C 1.53007 * 109.46977 * 84.72473 * 8 7 2 10 10 N 1.46495 * 109.47101 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00212 * 180.02562 * 10 9 8 12 12 O 1.21593 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00321 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00006 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.46892 * 179.97438 * 14 13 11 16 16 C 1.38629 * 119.75228 * 269.72499 * 15 14 13 17 17 C 1.37616 * 120.24858 * 179.72142 * 16 15 14 18 18 C 1.40716 * 119.74407 * 0.57853 * 17 16 15 19 19 C 1.41402 * 120.24375 * 179.68099 * 18 17 16 20 20 H 1.08000 * 119.99645 * 155.30990 * 19 18 17 21 21 C 1.39941 * 119.99953 * 335.30625 * 19 18 17 22 22 N 1.30828 * 120.00177 * 342.23381 * 21 19 18 23 23 Si 1.86804 * 120.00152 * 162.23437 * 21 19 18 24 24 H 1.48498 * 109.47091 * 94.66061 * 23 21 19 25 25 H 1.48494 * 109.47444 * 214.66552 * 23 21 19 26 26 H 1.48503 * 109.46800 * 334.66380 * 23 21 19 27 27 C 1.40714 * 119.51257 * 359.69471 * 18 17 16 28 28 C 1.37615 * 119.74343 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47238 * 270.26832 * 1 2 3 30 30 H 1.09005 * 109.47113 * 30.26973 * 1 2 3 31 31 H 1.09002 * 109.47431 * 150.26971 * 1 2 3 32 32 H 1.07997 * 119.61966 * 179.72761 * 4 3 2 33 33 H 1.08000 * 120.42308 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.79304 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47290 * 324.72816 * 8 7 2 36 36 H 1.08996 * 109.47333 * 204.72641 * 8 7 2 37 37 H 1.09001 * 109.46830 * 60.00061 * 9 8 7 38 38 H 1.08996 * 109.47226 * 300.00234 * 9 8 7 39 39 H 0.97006 * 120.00528 * 0.02562 * 10 9 8 40 40 H 0.96999 * 120.00441 * 359.97438 * 13 11 10 41 41 H 1.09003 * 109.46996 * 299.99926 * 14 13 11 42 42 H 1.08999 * 109.46741 * 60.00066 * 14 13 11 43 43 H 1.08001 * 119.87626 * 359.97438 * 16 15 14 44 44 H 1.08004 * 120.13163 * 180.27865 * 17 16 15 45 45 H 0.96993 * 119.99724 * 179.97438 * 22 21 19 46 46 H 1.08006 * 120.12756 * 179.97438 * 27 18 17 47 47 H 1.08004 * 119.87835 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 -0.0062 5 6 4.2267 0.0340 -0.0066 6 6 3.5766 -1.1903 -0.0011 7 6 2.1899 -1.2013 0.0056 8 6 1.4372 -2.5068 0.0123 9 6 1.0669 -2.8894 -1.4221 10 7 0.3357 -4.1589 -1.4156 11 6 -0.0938 -4.6951 -2.5751 12 8 0.1260 -4.1254 -3.6266 13 7 -0.7669 -5.8626 -2.5691 14 6 -1.2333 -6.4458 -3.8296 15 6 -1.9510 -7.7408 -3.5488 16 6 -1.2410 -8.9314 -3.5335 17 6 -1.8850 -10.1193 -3.2725 18 6 -3.2716 -10.1236 -3.0327 19 6 -3.9451 -11.3389 -2.7701 20 1 -4.8696 -11.3341 -2.2118 21 6 -3.4138 -12.5477 -3.2336 22 7 -2.5132 -12.5452 -4.1826 23 14 -3.9906 -14.1648 -2.4976 24 1 -5.0837 -14.7262 -3.3312 25 1 -2.8567 -15.1228 -2.4575 26 1 -4.4898 -13.9308 -1.1187 27 6 -3.9830 -8.9098 -3.0563 28 6 -3.3173 -7.7332 -3.3137 29 1 -0.3634 0.0048 1.0277 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 3.9753 2.1528 -0.0104 33 1 5.3057 0.0801 -0.0121 34 1 4.1366 -2.1137 -0.0017 35 1 0.5291 -2.3996 0.6057 36 1 2.0645 -3.2857 0.4457 37 1 1.9750 -2.9966 -2.0154 38 1 0.4396 -2.1106 -1.8555 39 1 0.1607 -4.6136 -0.5768 40 1 -0.9420 -6.3173 -1.7304 41 1 -1.9149 -5.7514 -4.3210 42 1 -0.3793 -6.6375 -4.4792 43 1 -0.1778 -8.9263 -3.7231 44 1 -1.3293 -11.0452 -3.2567 45 1 -2.1447 -13.3830 -4.5036 46 1 -5.0475 -8.9017 -2.8739 47 1 -3.8612 -6.8003 -3.3328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895486387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:42 Heat of formation + Delta-G solvation = 5.608227 kcal Electronic energy + Delta-G solvation = -26866.855154 eV Core-core repulsion = 23013.330573 eV Total energy + Delta-G solvation = -3853.524580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78745 -39.70068 -37.75363 -36.07267 -34.64131 -33.59969 -33.36882 -33.26118 -30.47914 -29.44099 -29.25764 -27.86532 -26.70596 -24.42723 -23.38811 -22.67049 -21.67495 -21.08849 -20.69931 -20.10178 -18.19021 -17.40210 -17.21095 -16.74227 -16.39426 -15.59445 -15.41565 -15.19477 -14.86764 -14.46344 -14.35545 -14.15580 -13.93006 -13.63210 -13.49060 -13.39515 -13.30809 -12.83833 -12.56230 -12.53087 -12.27409 -12.21167 -12.04413 -11.86260 -11.61199 -11.50051 -11.20024 -11.10617 -10.63083 -10.56525 -10.11121 -10.02308 -9.77924 -9.70363 -9.50053 -9.23878 -9.16476 -9.14111 -8.48905 -7.58284 -7.46575 -6.88042 -4.47639 0.70698 0.91427 2.49178 2.89974 2.97350 3.00891 3.05270 3.19363 3.40959 3.45158 3.84168 3.96649 4.27289 4.38237 4.44605 4.53497 4.60335 4.66223 4.77168 4.90422 5.10204 5.19011 5.21541 5.28760 5.38188 5.58009 5.58702 5.64016 5.77122 5.80085 5.85543 5.93503 5.95310 6.24236 6.30556 6.34693 6.35831 6.47212 6.85573 6.88908 6.96706 7.12364 7.18693 7.25720 7.50195 7.64700 7.73356 7.94288 8.00883 8.18162 8.28320 8.52578 8.77535 8.83858 8.85555 10.06138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.001553 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.511202 B =18029.738503 C =18163.061716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.136 3.864 3 N -0.485 5.485 4 C 0.099 3.901 5 C -0.179 4.179 6 C -0.066 4.066 7 C -0.131 4.131 8 C -0.089 4.089 9 C 0.145 3.855 10 N -0.754 5.754 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.734 5.734 14 C 0.203 3.797 15 C -0.244 4.244 16 C -0.080 4.080 17 C -0.170 4.170 18 C 0.116 3.884 19 C -0.459 4.459 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.787 5.787 23 Si 0.908 3.092 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.230 4.230 28 C -0.069 4.069 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.395 0.605 40 H 0.396 0.604 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.282 0.718 46 H 0.093 0.907 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 17.695 10.718 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.002 4.002 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.092 4.092 7 C -0.134 4.134 8 C -0.128 4.128 9 C 0.020 3.980 10 N -0.411 5.411 11 C 0.398 3.602 12 O -0.479 6.479 13 N -0.388 5.388 14 C 0.080 3.920 15 C -0.246 4.246 16 C -0.099 4.099 17 C -0.189 4.189 18 C 0.114 3.886 19 C -0.488 4.488 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.412 5.412 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.184 1.184 27 C -0.249 4.249 28 C -0.088 4.088 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.229 0.771 40 H 0.229 0.771 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.326 18.838 9.541 23.506 hybrid contribution 0.295 -2.011 0.973 2.254 sum 10.620 16.827 10.514 22.505 Atomic orbital electron populations 1.20855 0.88768 1.04084 1.03259 1.21210 0.97074 0.87729 0.94199 1.67544 1.10113 1.29221 1.12593 1.22755 0.89459 0.98546 0.95017 1.22131 1.01547 0.93414 1.02763 1.21544 0.93695 0.98697 0.95291 1.20478 0.94347 0.95722 1.02809 1.20747 1.00759 0.93973 0.97287 1.21070 0.96486 0.85087 0.95312 1.45116 1.62353 1.25400 1.08187 1.16093 0.78901 0.81420 0.83793 1.90900 1.63266 1.63438 1.30284 1.45723 1.59350 1.22266 1.11446 1.19800 0.96762 0.91980 0.83424 1.18998 0.94062 0.92733 1.18845 1.20563 0.97268 0.92709 0.99391 1.21304 0.94636 0.96520 1.06453 1.17676 0.91695 0.92133 0.87126 1.19654 1.07858 0.90599 1.30681 0.90288 1.25951 0.93772 1.01521 0.93046 1.69824 1.22529 1.29592 1.19223 0.86300 0.79202 0.80577 0.80706 1.19471 1.19956 1.18357 1.20968 0.97880 0.93074 1.13006 1.20416 0.93363 0.96406 0.98604 0.90218 0.90263 0.90082 0.82767 0.84730 0.84660 0.89599 0.89918 0.91689 0.91487 0.77107 0.77057 0.92617 0.92578 0.89397 0.86452 0.90683 0.88911 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.39 36.00 0.34 -0.51 16 2 C 0.14 1.26 6.78 -82.59 -0.56 0.70 16 3 N -0.49 -4.97 10.27 -9.47 -0.10 -5.06 16 4 C 0.10 0.79 11.18 -17.54 -0.20 0.60 16 5 C -0.18 -1.22 10.11 -39.44 -0.40 -1.62 16 6 C -0.07 -0.48 9.84 -39.28 -0.39 -0.87 16 7 C -0.13 -1.06 5.15 -104.48 -0.54 -1.60 16 8 C -0.09 -0.60 4.77 -27.88 -0.13 -0.74 16 9 C 0.15 1.42 5.46 -4.04 -0.02 1.40 16 10 N -0.75 -8.22 5.56 -65.23 -0.36 -8.58 16 11 C 0.70 10.91 8.57 -86.92 -0.74 10.16 16 12 O -0.60 -11.89 16.34 5.28 0.09 -11.80 16 13 N -0.73 -11.32 5.55 -66.41 -0.37 -11.69 16 14 C 0.20 3.67 5.79 -5.19 -0.03 3.64 16 15 C -0.24 -4.99 5.27 -104.33 -0.55 -5.54 16 16 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 17 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 18 C 0.12 2.96 5.57 -106.82 -0.60 2.36 16 19 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 20 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 21 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.62 10.97 55.55 0.61 -19.01 16 23 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 27 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 28 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.57 5.40 -51.93 -0.28 0.29 16 32 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.09 0.49 7.02 -51.93 -0.36 0.13 16 36 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.74 6.88 -51.93 -0.36 0.38 16 39 H 0.40 3.17 8.49 -40.82 -0.35 2.82 16 40 H 0.40 5.41 8.48 -40.82 -0.35 5.06 16 41 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 42 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.12 3.01 6.18 -52.48 -0.32 2.68 16 45 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 46 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 47 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 395.16 15.07 5.95 5.95 Total: -1.00 -30.84 395.16 -11.57 -42.42 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.63 Total: 11.46 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.73 Total: -16.51 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.22 Total: -44.35 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.84 -11.57 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895486387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.026 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds