Wall clock time and date at job start Tue Mar 31 2020 22:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31884 * 119.62134 * 2 1 4 4 C 1.31854 * 121.72904 * 180.31430 * 3 2 1 5 5 C 1.38230 * 120.76293 * 359.69869 * 4 3 2 6 6 C 1.38624 * 119.15996 * 0.02562 * 5 4 3 7 7 C 1.38191 * 119.61843 * 179.73345 * 2 1 3 8 8 C 1.50696 * 120.41578 * 359.97038 * 7 2 1 9 9 C 1.53007 * 109.46977 * 84.72473 * 8 7 2 10 10 N 1.46495 * 109.47101 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00212 * 180.02562 * 10 9 8 12 12 O 1.21593 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00321 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00006 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.46892 * 179.97438 * 14 13 11 16 16 C 1.38629 * 119.75228 * 269.72499 * 15 14 13 17 17 C 1.37616 * 120.24858 * 179.72142 * 16 15 14 18 18 C 1.40716 * 119.74407 * 0.57853 * 17 16 15 19 19 C 1.41402 * 120.24375 * 179.68099 * 18 17 16 20 20 H 1.08000 * 119.99645 * 155.30990 * 19 18 17 21 21 C 1.39941 * 119.99953 * 335.30625 * 19 18 17 22 22 N 1.30828 * 120.00177 * 342.23381 * 21 19 18 23 23 Si 1.86804 * 120.00152 * 162.23437 * 21 19 18 24 24 H 1.48498 * 109.47091 * 94.66061 * 23 21 19 25 25 H 1.48494 * 109.47444 * 214.66552 * 23 21 19 26 26 H 1.48503 * 109.46800 * 334.66380 * 23 21 19 27 27 C 1.40714 * 119.51257 * 359.69471 * 18 17 16 28 28 C 1.37615 * 119.74343 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47238 * 270.26832 * 1 2 3 30 30 H 1.09005 * 109.47113 * 30.26973 * 1 2 3 31 31 H 1.09002 * 109.47431 * 150.26971 * 1 2 3 32 32 H 1.07997 * 119.61966 * 179.72761 * 4 3 2 33 33 H 1.08000 * 120.42308 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.79304 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47290 * 324.72816 * 8 7 2 36 36 H 1.08996 * 109.47333 * 204.72641 * 8 7 2 37 37 H 1.09001 * 109.46830 * 60.00061 * 9 8 7 38 38 H 1.08996 * 109.47226 * 300.00234 * 9 8 7 39 39 H 0.97006 * 120.00528 * 0.02562 * 10 9 8 40 40 H 0.96999 * 120.00441 * 359.97438 * 13 11 10 41 41 H 1.09003 * 109.46996 * 299.99926 * 14 13 11 42 42 H 1.08999 * 109.46741 * 60.00066 * 14 13 11 43 43 H 1.08001 * 119.87626 * 359.97438 * 16 15 14 44 44 H 1.08004 * 120.13163 * 180.27865 * 17 16 15 45 45 H 0.96993 * 119.99724 * 179.97438 * 22 21 19 46 46 H 1.08006 * 120.12756 * 179.97438 * 27 18 17 47 47 H 1.08004 * 119.87835 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 -0.0062 5 6 4.2267 0.0340 -0.0066 6 6 3.5766 -1.1903 -0.0011 7 6 2.1899 -1.2013 0.0056 8 6 1.4372 -2.5068 0.0123 9 6 1.0669 -2.8894 -1.4221 10 7 0.3357 -4.1589 -1.4156 11 6 -0.0938 -4.6951 -2.5751 12 8 0.1260 -4.1254 -3.6266 13 7 -0.7669 -5.8626 -2.5691 14 6 -1.2333 -6.4458 -3.8296 15 6 -1.9510 -7.7408 -3.5488 16 6 -1.2410 -8.9314 -3.5335 17 6 -1.8850 -10.1193 -3.2725 18 6 -3.2716 -10.1236 -3.0327 19 6 -3.9451 -11.3389 -2.7701 20 1 -4.8696 -11.3341 -2.2118 21 6 -3.4138 -12.5477 -3.2336 22 7 -2.5132 -12.5452 -4.1826 23 14 -3.9906 -14.1648 -2.4976 24 1 -5.0837 -14.7262 -3.3312 25 1 -2.8567 -15.1228 -2.4575 26 1 -4.4898 -13.9308 -1.1187 27 6 -3.9830 -8.9098 -3.0563 28 6 -3.3173 -7.7332 -3.3137 29 1 -0.3634 0.0048 1.0277 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 3.9753 2.1528 -0.0104 33 1 5.3057 0.0801 -0.0121 34 1 4.1366 -2.1137 -0.0017 35 1 0.5291 -2.3996 0.6057 36 1 2.0645 -3.2857 0.4457 37 1 1.9750 -2.9966 -2.0154 38 1 0.4396 -2.1106 -1.8555 39 1 0.1607 -4.6136 -0.5768 40 1 -0.9420 -6.3173 -1.7304 41 1 -1.9149 -5.7514 -4.3210 42 1 -0.3793 -6.6375 -4.4792 43 1 -0.1778 -8.9263 -3.7231 44 1 -1.3293 -11.0452 -3.2567 45 1 -2.1447 -13.3830 -4.5036 46 1 -5.0475 -8.9017 -2.8739 47 1 -3.8612 -6.8003 -3.3328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895486387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:41 Heat of formation + Delta-G solvation = -12.543608 kcal Electronic energy + Delta-G solvation = -26867.642276 eV Core-core repulsion = 23013.330573 eV Total energy + Delta-G solvation = -3854.311703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40715 -40.90812 -39.47255 -36.99015 -36.18123 -35.05809 -34.31408 -33.88862 -32.05877 -31.16557 -30.18976 -28.66161 -28.09685 -25.61271 -24.58876 -23.28733 -22.88299 -22.30753 -21.93159 -21.76597 -19.38408 -19.22378 -17.80748 -17.54887 -17.27408 -17.12799 -16.65980 -16.14251 -15.83741 -15.68124 -15.61699 -15.45214 -15.03727 -14.95347 -14.87056 -14.22566 -14.02269 -13.95930 -13.81863 -13.60442 -13.40050 -13.31121 -13.13940 -12.94284 -12.90613 -12.73910 -12.64235 -12.38273 -12.15308 -12.12228 -11.50189 -11.38035 -11.27367 -11.01120 -10.68097 -10.38637 -10.33271 -9.72594 -9.69235 -9.38295 -9.27589 -8.66171 -6.35973 0.13281 0.34966 0.83782 1.15074 1.39492 1.45415 1.54304 1.90592 2.20206 2.20619 2.71211 2.81550 3.38156 3.46929 3.75974 3.82583 3.87107 3.97067 4.05983 4.10596 4.20391 4.32635 4.35145 4.49456 4.54381 4.63890 4.67394 4.69075 4.73995 4.79211 4.82743 4.94990 5.01519 5.06036 5.15842 5.21591 5.26601 5.36624 5.37421 5.44188 5.49793 5.57971 5.69941 5.81652 5.90583 6.09746 6.11138 6.22286 6.37384 6.69035 6.92800 7.01485 7.06232 7.17200 7.63248 8.30606 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.001553 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.511202 B =18029.738503 C =18163.061716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.114 3.886 3 N -0.518 5.518 4 C 0.085 3.915 5 C -0.178 4.178 6 C -0.074 4.074 7 C -0.140 4.140 8 C -0.076 4.076 9 C 0.148 3.852 10 N -0.732 5.732 11 C 0.697 3.303 12 O -0.643 6.643 13 N -0.727 5.727 14 C 0.213 3.787 15 C -0.226 4.226 16 C -0.081 4.081 17 C -0.191 4.191 18 C 0.085 3.915 19 C -0.497 4.497 20 H 0.077 0.923 21 C 0.036 3.964 22 N -0.822 5.822 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.267 1.267 26 H -0.257 1.257 27 C -0.242 4.242 28 C -0.067 4.067 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.413 0.587 40 H 0.407 0.593 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.289 0.711 46 H 0.098 0.902 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 18.081 12.131 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.023 4.023 3 N -0.228 5.228 4 C -0.072 4.072 5 C -0.197 4.197 6 C -0.099 4.099 7 C -0.142 4.142 8 C -0.114 4.114 9 C 0.023 3.977 10 N -0.390 5.390 11 C 0.397 3.603 12 O -0.525 6.525 13 N -0.382 5.382 14 C 0.090 3.910 15 C -0.227 4.227 16 C -0.100 4.100 17 C -0.211 4.211 18 C 0.083 3.917 19 C -0.526 4.526 20 H 0.095 0.905 21 C -0.179 4.179 22 N -0.447 5.447 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.191 1.191 26 H -0.181 1.181 27 C -0.262 4.262 28 C -0.085 4.085 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.191 0.809 33 H 0.179 0.821 34 H 0.174 0.826 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.250 0.750 40 H 0.242 0.758 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.146 19.237 11.012 24.810 hybrid contribution 0.139 -1.919 0.511 1.991 sum 11.286 17.317 11.523 23.665 Atomic orbital electron populations 1.20858 0.88201 1.03770 1.03890 1.21499 0.97800 0.88145 0.94866 1.67532 1.11379 1.30061 1.13839 1.23200 0.89105 1.00094 0.94802 1.22452 1.02901 0.92854 1.01516 1.21908 0.93643 0.99806 0.94571 1.20605 0.94927 0.95684 1.02993 1.20661 1.01651 0.93869 0.95216 1.21096 0.95366 0.83933 0.97256 1.44927 1.61042 1.25431 1.07559 1.16193 0.78708 0.81095 0.84317 1.90879 1.64853 1.64510 1.32268 1.45369 1.59412 1.22431 1.10986 1.19539 0.96324 0.90729 0.84456 1.19192 0.93967 0.93228 1.16341 1.20749 0.98180 0.92414 0.98669 1.21250 0.94644 0.96856 1.08300 1.18015 0.92344 0.93169 0.88177 1.19898 1.08624 0.91795 1.32270 0.90463 1.26763 0.93663 1.04623 0.92875 1.69874 1.23755 1.30827 1.20272 0.85214 0.78872 0.76058 0.79729 1.18873 1.19095 1.18105 1.21155 0.98362 0.93305 1.13367 1.20684 0.93701 0.96758 0.97401 0.89080 0.91137 0.89778 0.80868 0.82104 0.82618 0.88214 0.88019 0.93012 0.92805 0.75010 0.75756 0.92580 0.93128 0.87799 0.88208 0.90045 0.88361 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.39 71.23 0.67 -0.92 16 2 C 0.11 2.04 6.78 42.54 0.29 2.32 16 3 N -0.52 -10.41 10.27 -183.89 -1.89 -12.30 16 4 C 0.08 1.26 11.18 84.69 0.95 2.21 16 5 C -0.18 -2.08 10.11 22.36 0.23 -1.85 16 6 C -0.07 -0.91 9.84 22.47 0.22 -0.69 16 7 C -0.14 -2.03 5.15 -19.77 -0.10 -2.13 16 8 C -0.08 -0.83 4.77 29.85 0.14 -0.69 16 9 C 0.15 2.64 5.46 86.38 0.47 3.12 16 10 N -0.73 -14.26 5.56 -478.54 -2.66 -16.92 16 11 C 0.70 20.51 8.57 179.06 1.53 22.05 16 12 O -0.64 -24.85 16.34 -4.01 -0.07 -24.92 16 13 N -0.73 -20.84 5.55 -482.28 -2.68 -23.52 16 14 C 0.21 7.31 5.79 85.63 0.50 7.81 16 15 C -0.23 -8.87 5.27 -19.68 -0.10 -8.98 16 16 C -0.08 -3.53 9.67 22.22 0.21 -3.32 16 17 C -0.19 -9.60 8.70 22.73 0.20 -9.40 16 18 C 0.09 4.43 5.57 -21.29 -0.12 4.31 16 19 C -0.50 -25.90 9.05 23.46 0.21 -25.69 16 20 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 21 C 0.04 1.77 5.14 85.25 0.44 2.21 16 22 N -0.82 -41.92 10.97 21.83 0.24 -41.68 16 23 Si 0.98 36.86 29.60 68.60 2.03 38.89 16 24 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 25 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 26 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 27 C -0.24 -11.27 9.80 22.73 0.22 -11.05 16 28 C -0.07 -2.71 9.67 22.22 0.21 -2.50 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.08 1.11 5.40 -2.39 -0.01 1.10 16 32 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.10 0.85 7.02 -2.39 -0.02 0.83 16 36 H 0.10 0.77 8.06 -2.39 -0.02 0.75 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.14 6.88 -2.39 -0.02 1.12 16 39 H 0.41 5.29 8.49 -92.70 -0.79 4.50 16 40 H 0.41 10.03 8.48 -92.71 -0.79 9.24 16 41 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 42 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 43 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.10 5.30 6.18 -2.91 -0.02 5.28 16 45 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 46 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 47 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -68.42 395.16 0.58 -67.84 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.56 Total: 35.79 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 6.17 Total: -23.17 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -6.99 Total: -94.42 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.07 Total: -24.92 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -68.42 0.58 -67.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895486387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.295 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds