Wall clock time and date at job start Tue Mar 31 2020 22:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39316 * 119.11196 * 2 1 4 4 C 1.36579 * 119.90259 * 179.97438 * 3 2 1 5 5 C 1.40894 * 118.16031 * 359.97438 * 4 3 2 6 6 C 1.40176 * 121.22273 * 180.02562 * 5 4 3 7 7 C 1.38550 * 119.40224 * 179.97438 * 6 5 4 8 8 C 1.47771 * 119.80028 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99452 * 172.89379 * 8 7 6 10 10 N 1.34767 * 120.00252 * 352.88483 * 8 7 6 11 11 C 1.47425 * 125.64747 * 185.83758 * 10 8 7 12 12 C 1.54914 * 104.83329 * 204.09178 * 11 10 8 13 13 H 1.08999 * 111.00523 * 81.05690 * 12 11 10 14 14 C 1.52999 * 111.00824 * 204.87740 * 12 11 10 15 15 C 1.55160 * 101.58070 * 322.98699 * 12 11 10 16 16 H 1.08997 * 110.72291 * 276.96057 * 15 12 11 17 17 N 1.46504 * 110.72009 * 153.86117 * 15 12 11 18 18 C 1.36939 * 119.99800 * 155.00351 * 17 15 12 19 19 H 1.08002 * 119.99975 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00042 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99895 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99968 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47290 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47151 * 120.00013 * 22 20 18 25 25 H 1.48507 * 109.46909 * 239.99488 * 22 20 18 26 26 C 1.47024 * 125.65075 * 5.52826 * 10 8 7 27 27 C 1.40626 * 120.39201 * 359.97438 * 7 6 5 28 28 C 1.35701 * 120.92116 * 359.97438 * 27 7 6 29 29 C 1.40764 * 120.11424 * 0.02562 * 28 27 7 30 30 N 1.31115 * 119.11842 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47314 * 90.00106 * 1 2 3 32 32 H 1.08999 * 109.46739 * 209.99844 * 1 2 3 33 33 H 1.08994 * 109.47106 * 329.99613 * 1 2 3 34 34 H 1.08002 * 120.04935 * 0.25447 * 3 2 1 35 35 H 1.08003 * 120.92054 * 180.02562 * 4 3 2 36 36 H 1.07999 * 120.29922 * 359.95240 * 6 5 4 37 37 H 1.09005 * 110.36783 * 322.92522 * 11 10 8 38 38 H 1.08995 * 110.37092 * 85.14616 * 11 10 8 39 39 H 1.09003 * 109.47120 * 58.53993 * 14 12 11 40 40 H 1.08997 * 109.47161 * 178.54669 * 14 12 11 41 41 H 1.09003 * 109.46875 * 298.54847 * 14 12 11 42 42 H 0.97002 * 119.99909 * 335.00491 * 17 15 12 43 43 H 0.96999 * 119.99953 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.87992 * 298.39322 * 26 10 8 45 45 H 1.08995 * 109.88205 * 59.55715 * 26 10 8 46 46 H 1.07995 * 119.54186 * 179.97438 * 27 7 6 47 47 H 1.07996 * 119.94390 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2360 0.0005 5 6 4.2325 0.0031 0.0016 6 6 5.6331 -0.0524 0.0027 7 6 6.2650 -1.2855 0.0043 8 6 7.7411 -1.3543 0.0061 9 8 8.2993 -2.4262 0.1378 10 7 8.4683 -0.2290 -0.1384 11 6 9.9348 -0.1654 -0.2760 12 6 10.3170 1.2565 0.2055 13 1 10.3640 1.3012 1.2935 14 6 11.6394 1.7093 -0.4167 15 6 9.1305 2.0978 -0.3348 16 1 9.2893 2.3616 -1.3804 17 7 8.9359 3.3012 0.4777 18 6 8.3346 4.4047 -0.0663 19 1 8.0034 4.3877 -1.0941 20 6 8.1507 5.5452 0.7033 21 7 8.5539 5.5658 1.9561 22 14 7.3310 7.0507 -0.0389 23 1 6.9739 6.7731 -1.4533 24 1 6.1014 7.3737 0.7284 25 1 8.2668 8.2024 0.0180 26 6 7.9302 1.1382 -0.1913 27 6 5.5098 -2.4718 0.0054 28 6 4.1533 -2.4349 0.0053 29 6 3.4804 -1.1986 0.0037 30 7 2.1450 -1.1454 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6312 2.1445 0.0042 35 1 4.0926 2.1701 0.0010 36 1 6.2145 0.8577 0.0020 37 1 10.4079 -0.9190 0.3537 38 1 10.2246 -0.3057 -1.3173 39 1 11.5529 1.6968 -1.5032 40 1 11.8710 2.7205 -0.0821 41 1 12.4365 1.0329 -0.1080 42 1 9.2331 3.3164 1.4009 43 1 8.4257 6.3629 2.4939 44 1 7.2656 1.2420 -1.0490 45 1 7.3890 1.3594 0.7286 46 1 6.0165 -3.4255 0.0062 47 1 3.5890 -3.3558 0.0057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939366632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:45 Heat of formation + Delta-G solvation = 35.135685 kcal Electronic energy + Delta-G solvation = -29082.296760 eV Core-core repulsion = 25230.052586 eV Total energy + Delta-G solvation = -3852.244174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16959 -41.15567 -39.14032 -37.97059 -35.91605 -34.78508 -34.03725 -33.00575 -32.52467 -31.16727 -29.46042 -29.08461 -27.35141 -26.07409 -24.80031 -24.48433 -23.30852 -22.73494 -21.41523 -21.05959 -19.29931 -19.07855 -18.42854 -17.83885 -17.29753 -16.86999 -16.54464 -16.32227 -15.81317 -15.62868 -15.61377 -15.35552 -14.97492 -14.77980 -14.52825 -14.23773 -14.23196 -13.98058 -13.89006 -13.70946 -13.59757 -13.08570 -13.02936 -12.87895 -12.86982 -12.84292 -12.46502 -12.29187 -12.10555 -12.01742 -11.94012 -11.69447 -11.62760 -11.46445 -11.18151 -10.89913 -10.49541 -9.88387 -9.66135 -9.36753 -9.03858 -7.91968 -5.22049 -0.87079 -0.38631 0.80607 1.31399 1.51307 1.53911 1.62007 1.83710 2.17237 2.58564 2.99592 3.09919 3.26385 3.38150 3.48738 3.63476 3.70879 3.78515 3.80431 3.84730 4.00341 4.01930 4.20801 4.25069 4.29091 4.37616 4.45492 4.54182 4.62293 4.66708 4.76479 4.79226 4.80674 4.81273 4.85040 4.90417 4.99530 5.07167 5.09808 5.14166 5.17533 5.21331 5.27892 5.33325 5.48756 5.49700 5.58646 5.73239 6.27597 6.35642 6.84606 6.95772 7.36529 8.06647 8.31160 9.30908 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008167 B = 0.004187 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.551999 B = 6686.110963 C = 9848.133082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.174 4.174 4 C -0.052 4.052 5 C -0.135 4.135 6 C -0.081 4.081 7 C -0.149 4.149 8 C 0.569 3.431 9 O -0.576 6.576 10 N -0.606 5.606 11 C 0.115 3.885 12 C -0.105 4.105 13 H 0.070 0.930 14 C -0.127 4.127 15 C 0.171 3.829 16 H 0.078 0.922 17 N -0.720 5.720 18 C -0.239 4.239 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.301 1.301 26 C 0.071 3.929 27 C -0.055 4.055 28 C -0.107 4.107 29 C 0.133 3.867 30 N -0.507 5.507 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.172 0.828 35 H 0.156 0.844 36 H 0.177 0.823 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.146 0.854 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 -10.643 -6.344 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.193 4.193 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.100 4.100 7 C -0.152 4.152 8 C 0.360 3.640 9 O -0.458 6.458 10 N -0.337 5.337 11 C -0.007 4.007 12 C -0.125 4.125 13 H 0.089 0.911 14 C -0.184 4.184 15 C 0.060 3.940 16 H 0.096 0.904 17 N -0.358 5.358 18 C -0.370 4.370 19 H 0.102 0.898 20 C -0.258 4.258 21 N -0.616 5.616 22 Si 0.794 3.206 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.228 1.228 26 C -0.054 4.054 27 C -0.075 4.075 28 C -0.126 4.126 29 C 0.012 3.988 30 N -0.217 5.217 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.190 0.810 35 H 0.173 0.827 36 H 0.193 0.807 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.163 0.837 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.434 -11.973 -6.409 17.126 hybrid contribution 0.348 1.713 0.451 1.805 sum -10.086 -10.260 -5.958 15.572 Atomic orbital electron populations 1.20924 0.85804 1.04885 1.04563 1.22272 0.99030 0.87928 0.89755 1.22126 0.94596 1.00517 1.02109 1.21921 0.95558 0.97384 0.92864 1.19014 0.94455 0.95103 1.05178 1.23311 0.94106 0.99888 0.92655 1.19865 0.92289 0.94949 1.08055 1.18139 0.87051 0.82579 0.76235 1.90715 1.73303 1.29056 1.52696 1.48388 1.08829 1.06069 1.70411 1.22394 0.78853 0.97311 1.02141 1.22569 0.96406 0.93090 1.00472 0.91107 1.21552 0.94837 1.01099 1.00946 1.21499 0.91060 0.85466 0.95933 0.90424 1.42489 1.70865 1.10125 1.12305 1.19665 1.29616 0.91383 0.96347 0.89832 1.25444 1.03052 1.00952 0.96357 1.69816 1.54075 1.29295 1.08448 0.85220 0.77321 0.79878 0.78210 1.18655 1.22308 1.22837 1.23544 0.99700 0.80868 1.01279 1.20916 0.93378 0.97939 0.95266 1.20812 0.93401 0.96978 1.01385 1.19251 0.89748 0.93394 0.96445 1.67946 1.08005 1.30009 1.15743 0.88558 0.90389 0.87972 0.81048 0.82662 0.80652 0.90563 0.89476 0.91448 0.93323 0.90973 0.79219 0.94143 0.89951 0.91097 0.83670 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.14 71.24 0.72 -0.57 16 2 C 0.16 3.38 6.78 42.93 0.29 3.67 16 3 C -0.17 -3.39 9.64 22.14 0.21 -3.18 16 4 C -0.05 -1.23 9.89 22.53 0.22 -1.01 16 5 C -0.14 -3.79 5.74 -21.29 -0.12 -3.91 16 6 C -0.08 -2.36 8.37 22.82 0.19 -2.17 16 7 C -0.15 -4.53 5.87 -20.10 -0.12 -4.65 16 8 C 0.57 19.05 7.80 86.77 0.68 19.73 16 9 O -0.58 -21.92 16.56 -3.94 -0.07 -21.98 16 10 N -0.61 -18.65 3.33 -835.42 -2.78 -21.43 16 11 C 0.12 3.15 6.40 86.86 0.56 3.70 16 12 C -0.11 -3.04 3.27 -9.40 -0.03 -3.07 16 13 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 14 C -0.13 -3.17 9.30 71.98 0.67 -2.50 16 15 C 0.17 5.72 3.08 46.19 0.14 5.87 16 16 H 0.08 2.53 7.96 -2.39 -0.02 2.52 16 17 N -0.72 -31.36 5.15 -317.29 -1.64 -32.99 16 18 C -0.24 -11.55 9.96 84.03 0.84 -10.71 16 19 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 20 C -0.07 -3.39 5.50 84.86 0.47 -2.92 16 21 N -0.97 -54.78 13.06 21.65 0.28 -54.50 16 22 Si 0.96 42.12 29.55 68.60 2.03 44.14 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 26 C 0.07 2.21 4.62 86.73 0.40 2.61 16 27 C -0.05 -1.50 9.49 22.26 0.21 -1.29 16 28 C -0.11 -2.78 9.95 22.30 0.22 -2.55 16 29 C 0.13 3.75 6.61 40.36 0.27 4.01 16 30 N -0.51 -13.31 10.23 -176.58 -1.81 -15.12 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.18 5.08 2.69 -10.63 -0.03 5.05 16 37 H 0.08 2.12 7.98 -2.38 -0.02 2.10 16 38 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 39 H 0.07 1.51 8.11 -2.39 -0.02 1.49 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.38 18.19 7.76 -92.71 -0.72 17.47 16 43 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.08 2.36 6.75 -2.39 -0.02 2.35 16 45 H 0.07 2.43 6.61 -2.39 -0.02 2.41 16 46 H 0.15 3.73 7.63 -2.91 -0.02 3.71 16 47 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -65.33 384.09 2.11 -63.23 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.26 Total: 37.59 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.82 Total: 1.06 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.94 Total: -124.04 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.07 Total: -21.98 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -65.33 2.11 -63.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939366632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.363 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds