Wall clock time and date at job start Tue Mar 31 2020 22:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39317 * 119.05822 * 2 1 4 4 C 1.38860 * 119.57829 * 179.97438 * 3 2 1 5 5 C 1.47902 * 121.11261 * 179.97438 * 4 3 2 6 6 O 1.21542 * 120.00164 * 141.51737 * 5 4 3 7 7 N 1.34788 * 119.99752 * 321.51381 * 5 4 3 8 8 C 1.47016 * 125.64597 * 174.75430 * 7 5 4 9 9 C 1.54326 * 107.27188 * 178.99747 * 8 7 5 10 10 H 1.08997 * 110.71741 * 96.17134 * 9 8 7 11 11 C 1.52999 * 110.87447 * 219.37474 * 9 8 7 12 12 C 1.55160 * 102.94121 * 337.80840 * 9 8 7 13 13 H 1.08996 * 111.00560 * 277.39437 * 12 9 8 14 14 N 1.46496 * 111.00240 * 153.57150 * 12 9 8 15 15 C 1.36939 * 119.99685 * 158.18217 * 14 12 9 16 16 H 1.08000 * 120.00206 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00105 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99987 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00345 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46912 * 59.99688 * 19 17 15 21 21 H 1.48493 * 109.47218 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46897 * 299.99950 * 19 17 15 23 23 C 1.47468 * 125.62970 * 354.78265 * 7 5 4 24 24 C 1.41829 * 117.77611 * 0.25302 * 4 3 2 25 25 C 1.40103 * 121.36859 * 179.72582 * 24 4 3 26 26 C 1.36248 * 119.64019 * 180.02562 * 25 24 4 27 27 C 1.39340 * 120.83628 * 359.97039 * 26 25 24 28 28 C 1.36069 * 121.05006 * 359.52764 * 27 26 25 29 29 C 1.40709 * 119.73961 * 0.73533 * 28 27 26 30 30 N 1.30968 * 119.06284 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47237 * 90.00008 * 1 2 3 32 32 H 1.09004 * 109.46661 * 209.99822 * 1 2 3 33 33 H 1.09004 * 109.47011 * 329.99907 * 1 2 3 34 34 H 1.07998 * 120.20952 * 359.95520 * 3 2 1 35 35 H 1.09013 * 109.88207 * 59.58330 * 8 7 5 36 36 H 1.08997 * 110.01891 * 298.49074 * 8 7 5 37 37 H 1.09002 * 109.47120 * 173.60620 * 11 9 8 38 38 H 1.08996 * 109.47296 * 293.61014 * 11 9 8 39 39 H 1.09003 * 109.47046 * 53.60716 * 11 9 8 40 40 H 0.96995 * 120.00759 * 338.18502 * 14 12 9 41 41 H 0.97001 * 120.00186 * 180.02562 * 18 17 15 42 42 H 1.08997 * 110.34700 * 85.22830 * 23 7 5 43 43 H 1.09003 * 110.40186 * 322.89753 * 23 7 5 44 44 H 1.08005 * 120.17798 * 0.02562 * 25 24 4 45 45 H 1.07998 * 119.57714 * 179.97438 * 26 25 24 46 46 H 1.08006 * 119.47603 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.12936 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5722 1.2304 0.0005 5 6 4.3249 2.5036 0.0000 6 8 5.3432 2.6078 0.6553 7 7 3.8816 3.5482 -0.7273 8 6 4.4663 4.8971 -0.7341 9 6 3.6475 5.7464 -1.7291 10 1 2.8815 6.3199 -1.2073 11 6 4.5602 6.6733 -2.5345 12 6 3.0014 4.6770 -2.6491 13 1 3.6954 4.3608 -3.4279 14 7 1.7519 5.1719 -3.2323 15 6 1.2615 4.6080 -4.3798 16 1 1.7960 3.7989 -4.8551 17 6 0.0778 5.0772 -4.9327 18 7 -0.5734 6.0637 -4.3538 19 14 -0.5909 4.3086 -6.4985 20 1 -0.8495 2.8643 -6.2696 21 1 -1.8575 4.9836 -6.8794 22 1 0.4027 4.4665 -7.5908 23 6 2.7294 3.5270 -1.6475 24 6 4.2445 -0.0184 -0.0045 25 6 5.6435 -0.0935 -0.0100 26 6 6.2529 -1.3121 -0.0153 27 6 5.5022 -2.4860 -0.0145 28 6 4.1421 -2.4493 0.0010 29 6 3.4772 -1.2093 0.0010 30 7 2.1432 -1.1448 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6317 2.1461 -0.0007 35 1 5.5065 4.8486 -1.0565 36 1 4.4073 5.3343 0.2626 37 1 3.9771 7.1776 -3.3051 38 1 5.0026 7.4151 -1.8697 39 1 5.3512 6.0873 -3.0027 40 1 1.2720 5.8989 -2.8057 41 1 -1.4007 6.3913 -4.7399 42 1 1.8045 3.7108 -1.1009 43 1 2.6785 2.5722 -2.1708 44 1 6.2357 0.8098 -0.0101 45 1 7.3314 -1.3687 -0.0199 46 1 6.0081 -3.4403 -0.0183 47 1 3.5750 -3.3685 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939673206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:50 Heat of formation + Delta-G solvation = 33.971393 kcal Electronic energy + Delta-G solvation = -29362.536939 eV Core-core repulsion = 25510.242277 eV Total energy + Delta-G solvation = -3852.294661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23350 -39.68543 -37.70818 -37.42722 -34.22168 -33.66779 -32.48070 -32.09340 -30.82450 -30.14577 -27.91276 -27.69519 -26.58092 -24.61290 -23.86028 -22.97592 -22.56839 -21.46315 -20.02462 -19.33457 -18.22680 -17.50819 -17.27771 -16.96172 -16.18883 -15.75065 -15.21083 -14.96147 -14.74834 -14.52297 -14.32577 -13.87439 -13.74114 -13.48824 -13.33486 -13.19766 -13.10283 -12.97474 -12.81064 -12.71562 -12.30240 -12.02641 -11.81716 -11.60867 -11.44525 -11.43994 -11.18619 -11.09964 -10.84609 -10.69916 -10.54633 -10.33491 -10.29142 -10.04016 -9.82880 -9.44937 -9.09338 -8.77463 -8.53683 -8.32052 -7.17506 -5.92473 -3.23818 0.08036 0.69401 1.65269 2.65609 2.84230 3.03774 3.35408 3.41141 3.41277 3.99041 4.03293 4.25967 4.46516 4.54858 4.60663 4.72053 4.83090 4.98997 5.01858 5.05763 5.12684 5.19025 5.28605 5.38192 5.45444 5.54716 5.56902 5.61707 5.65304 5.72014 5.73078 5.80143 5.86861 5.92116 5.94178 6.00914 6.11636 6.13823 6.20878 6.25329 6.32227 6.35202 6.39545 6.44036 6.53831 6.72274 6.75905 7.53763 7.57260 7.80238 8.08249 8.24787 9.37164 9.89035 10.24386 11.29080 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.003655 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.082338 B = 7659.129081 C = 9217.193857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.161 3.839 3 C -0.131 4.131 4 C -0.059 4.059 5 C 0.572 3.428 6 O -0.539 6.539 7 N -0.602 5.602 8 C 0.117 3.883 9 C -0.114 4.114 10 H 0.086 0.914 11 C -0.134 4.134 12 C 0.178 3.822 13 H 0.068 0.932 14 N -0.708 5.708 15 C -0.251 4.251 16 H 0.071 0.929 17 C -0.004 4.004 18 N -0.928 5.928 19 Si 0.907 3.093 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.068 3.932 24 C -0.073 4.073 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.099 4.099 28 C -0.098 4.098 29 C 0.132 3.868 30 N -0.466 5.466 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.388 0.612 41 H 0.258 0.742 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.144 0.856 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -10.506 9.733 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 C -0.152 4.152 4 C -0.070 4.070 5 C 0.360 3.640 6 O -0.417 6.417 7 N -0.334 5.334 8 C -0.006 4.006 9 C -0.134 4.134 10 H 0.104 0.896 11 C -0.192 4.192 12 C 0.065 3.935 13 H 0.086 0.914 14 N -0.348 5.348 15 C -0.382 4.382 16 H 0.089 0.911 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.737 3.263 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.058 4.058 24 C -0.076 4.076 25 C -0.105 4.105 26 C -0.140 4.140 27 C -0.119 4.119 28 C -0.116 4.116 29 C 0.010 3.990 30 N -0.176 5.176 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.222 0.778 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.161 0.839 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.108 -11.388 9.928 17.640 hybrid contribution -0.241 0.583 -0.710 0.950 sum 8.867 -10.804 9.218 16.743 Atomic orbital electron populations 1.20828 0.87888 1.03784 1.04023 1.21457 0.97427 0.87508 0.92767 1.22464 0.93472 1.00336 0.98902 1.20289 0.93904 0.93066 0.99704 1.17717 0.84220 0.82443 0.79645 1.90736 1.24302 1.83036 1.43669 1.48442 1.32063 1.10246 1.42669 1.22042 0.97661 0.81129 0.99763 1.22517 0.97934 0.96711 0.96223 0.89597 1.21662 0.98917 0.98720 0.99881 1.21360 0.89792 0.90179 0.92155 0.91440 1.42274 1.22767 1.41331 1.28387 1.19179 1.04323 1.13991 1.00724 0.91080 1.24742 0.97761 0.98425 0.99186 1.69641 1.18187 1.28629 1.41070 0.86289 0.78240 0.78592 0.83184 1.21086 1.21576 1.21116 1.23756 0.87495 1.02947 0.91614 1.18596 0.94955 0.92172 1.01864 1.21334 0.93014 0.99376 0.96809 1.20974 1.00403 0.92161 1.00446 1.20924 0.93713 0.98707 0.98582 1.20767 0.94186 0.96052 1.00629 1.18797 0.88872 0.92761 0.98587 1.67637 1.08639 1.28880 1.12478 0.89441 0.90204 0.90140 0.83351 0.91269 0.91613 0.91210 0.93115 0.92868 0.77779 0.93213 0.90851 0.91068 0.83883 0.85455 0.85289 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.14 36.00 0.37 -0.77 16 2 C 0.16 2.18 6.78 -82.56 -0.56 1.62 16 3 C -0.13 -1.84 7.94 -38.95 -0.31 -2.15 16 4 C -0.06 -0.91 5.40 -104.34 -0.56 -1.47 16 5 C 0.57 9.35 7.18 -12.30 -0.09 9.26 16 6 O -0.54 -9.77 15.11 5.33 0.08 -9.69 16 7 N -0.60 -9.30 3.33 -171.57 -0.57 -9.87 16 8 C 0.12 1.65 6.47 -3.07 -0.02 1.63 16 9 C -0.11 -1.67 3.18 -88.78 -0.28 -1.95 16 10 H 0.09 1.28 8.00 -51.93 -0.42 0.87 16 11 C -0.13 -1.80 9.17 37.16 0.34 -1.46 16 12 C 0.18 3.15 3.14 -65.78 -0.21 2.95 16 13 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 14 N -0.71 -15.75 5.26 -51.35 -0.27 -16.02 16 15 C -0.25 -6.37 9.97 -15.06 -0.15 -6.52 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 18 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 19 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.07 1.10 4.98 -2.51 -0.01 1.08 16 24 C -0.07 -1.11 5.76 -106.52 -0.61 -1.72 16 25 C -0.09 -1.20 9.17 -39.60 -0.36 -1.56 16 26 C -0.12 -1.34 9.96 -39.89 -0.40 -1.73 16 27 C -0.10 -1.00 9.94 -39.95 -0.40 -1.39 16 28 C -0.10 -1.15 9.98 -39.43 -0.39 -1.55 16 29 C 0.13 1.91 6.61 -84.87 -0.56 1.35 16 30 N -0.47 -6.84 10.19 -7.25 -0.07 -6.91 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.15 1.92 6.06 -52.49 -0.32 1.60 16 35 H 0.07 0.95 7.78 -51.92 -0.40 0.55 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.39 9.19 7.73 -40.82 -0.32 8.88 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 1.20 7.03 -51.93 -0.37 0.83 16 43 H 0.07 1.20 7.35 -51.93 -0.38 0.82 16 44 H 0.14 2.09 5.93 -52.48 -0.31 1.78 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -30.04 384.16 -10.35 -40.39 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.69 Total: 10.14 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -4.31 Total: -4.60 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.19 Total: -58.13 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.04 -10.35 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939673206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.359 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds