Wall clock time and date at job start Tue Mar 31 2020 23:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.52817 * 2 1 4 4 C 1.53624 * 109.63347 * 239.91643 * 2 1 3 5 5 N 1.46935 * 108.54215 * 294.86737 * 4 2 1 6 6 C 1.36936 * 120.63023 * 126.36943 * 5 4 2 7 7 H 1.07997 * 119.99885 * 331.90800 * 6 5 4 8 8 C 1.38811 * 119.99888 * 151.90505 * 6 5 4 9 9 N 1.31621 * 119.99732 * 143.81479 * 8 6 5 10 10 Si 1.86800 * 120.00184 * 323.80699 * 8 6 5 11 11 H 1.48500 * 109.47418 * 270.00390 * 10 8 6 12 12 H 1.48495 * 109.46857 * 30.00411 * 10 8 6 13 13 H 1.48500 * 109.47142 * 149.99996 * 10 8 6 14 14 C 1.46921 * 118.73813 * 306.09085 * 5 4 2 15 15 C 1.53197 * 108.77446 * 53.86230 * 14 5 4 16 16 C 1.53035 * 109.31261 * 305.36155 * 15 14 5 17 17 H 1.08995 * 109.46298 * 301.36249 * 16 15 14 18 18 N 1.46503 * 109.45954 * 181.38326 * 16 15 14 19 19 C 1.34770 * 119.99728 * 85.00212 * 18 16 15 20 20 O 1.21274 * 120.00400 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99731 * 179.97438 * 19 18 16 22 22 N 1.46506 * 109.47190 * 179.97438 * 21 19 18 23 23 C 1.36366 * 125.96614 * 269.69720 * 22 21 19 24 24 O 1.35631 * 125.98550 * 0.03124 * 23 22 21 25 25 N 1.30902 * 108.02435 * 179.88247 * 23 22 21 26 26 N 1.40108 * 107.94112 * 0.37353 * 25 23 22 27 27 C 1.30910 * 107.94239 * 359.76043 * 26 25 23 28 28 O 1.35624 * 125.99620 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.46953 * 299.92128 * 1 2 3 30 30 H 1.09003 * 109.46767 * 59.91552 * 1 2 3 31 31 H 1.08995 * 109.47017 * 179.91716 * 1 2 3 32 32 H 1.09000 * 109.46893 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46820 * 300.08310 * 3 2 1 34 34 H 1.08993 * 109.46768 * 60.08014 * 3 2 1 35 35 H 1.09002 * 109.74302 * 175.13573 * 4 2 1 36 36 H 1.08998 * 109.66999 * 54.55979 * 4 2 1 37 37 H 0.96997 * 120.00048 * 354.91621 * 9 8 6 38 38 H 1.09005 * 109.58605 * 173.64670 * 14 5 4 39 39 H 1.08991 * 109.58948 * 294.07495 * 14 5 4 40 40 H 1.09001 * 109.49437 * 65.31690 * 15 14 5 41 41 H 1.08997 * 109.50082 * 185.41054 * 15 14 5 42 42 H 0.96997 * 119.99793 * 265.00159 * 18 16 15 43 43 H 1.08996 * 109.47516 * 299.99811 * 21 19 18 44 44 H 1.08997 * 109.47171 * 60.00439 * 21 19 18 45 45 H 0.96699 * 114.00120 * 90.00819 * 24 23 22 46 46 H 0.96701 * 114.00000 * 270.03022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0462 -0.7253 -1.2520 5 7 1.6514 -2.1382 -1.1696 6 6 0.9638 -2.7314 -2.1945 7 1 0.3242 -2.1376 -2.8305 8 6 1.0890 -4.0960 -2.4159 9 7 0.0490 -4.7957 -2.8173 10 14 2.7336 -4.9393 -2.1445 11 1 3.5169 -4.9145 -3.4059 12 1 3.4856 -4.2266 -1.0808 13 1 2.5057 -6.3472 -1.7310 14 6 2.0139 -2.9041 0.0307 15 6 1.5029 -2.1558 1.2660 16 6 2.0408 -0.7232 1.2484 17 1 3.1305 -0.7446 1.2350 18 7 1.5811 -0.0145 2.4453 19 6 2.2705 -0.1218 3.5983 20 8 3.2717 -0.8046 3.6450 21 6 1.7979 0.6076 4.8295 22 7 2.7103 0.3306 5.9417 23 6 2.5949 -0.6918 6.8367 24 8 1.6158 -1.6303 6.8526 25 7 3.5963 -0.6106 7.6758 26 7 4.3722 0.4990 7.3157 27 6 3.8203 1.0536 6.2661 28 8 4.2724 2.1545 5.6158 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1315 1.4409 -0.0005 33 1 1.6774 1.9566 -0.8892 34 1 1.6798 1.9557 0.8907 35 1 3.1327 -0.6517 -1.2985 36 1 1.6089 -0.2752 -2.1432 37 1 -0.8216 -4.3737 -2.8875 38 1 1.5552 -3.8919 -0.0138 39 1 3.0978 -3.0044 0.0867 40 1 0.4132 -2.1355 1.2540 41 1 1.8479 -2.6629 2.1670 42 1 0.7805 0.5319 2.4079 43 1 1.7799 1.6795 4.6323 44 1 0.7951 0.2691 5.0898 45 1 1.8181 -2.4186 6.3305 46 1 3.9151 2.9864 5.9554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941185694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:37 Heat of formation + Delta-G solvation = 9.952607 kcal Electronic energy + Delta-G solvation = -31075.578213 eV Core-core repulsion = 26811.392756 eV Total energy + Delta-G solvation = -4264.185457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60593 -40.36600 -38.52310 -38.49367 -37.39918 -35.00004 -34.60088 -33.40722 -31.91632 -30.49083 -29.86555 -28.37964 -27.12804 -26.32293 -24.74980 -23.09149 -22.57448 -22.12959 -21.16104 -20.70971 -19.32555 -19.20749 -18.52241 -17.73616 -17.38290 -17.05086 -16.52471 -15.92302 -15.67048 -15.50876 -14.78302 -14.52520 -14.25468 -14.06996 -13.88077 -13.80235 -13.61453 -13.23772 -13.02700 -12.92685 -12.72252 -12.50900 -12.27682 -11.82084 -11.70253 -11.54195 -11.36092 -11.20922 -11.05205 -10.88908 -10.85158 -10.59777 -10.46003 -10.28611 -10.10201 -9.79344 -9.71085 -9.67757 -9.32955 -9.01019 -8.33937 -7.07702 -6.42854 -3.32410 1.13182 1.41333 1.93955 2.22939 2.82852 2.94257 3.44720 3.48289 3.55523 3.68292 4.00370 4.27845 4.41534 4.60298 4.78876 4.83580 4.88860 4.89880 5.06634 5.10040 5.32838 5.34304 5.55007 5.57182 5.68487 5.73571 5.75923 5.88514 5.92865 6.04569 6.11211 6.19746 6.25966 6.29893 6.50714 6.53003 6.58151 6.66687 6.68910 6.72281 6.90467 6.96079 7.25730 7.59167 7.90254 7.98762 8.38472 8.95214 9.57252 10.16451 10.97403 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003109 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.410620 B = 9005.057300 C = 9735.449889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.137 4.137 4 C 0.158 3.842 5 N -0.595 5.595 6 C -0.362 4.362 7 H 0.065 0.935 8 C 0.007 3.993 9 N -0.897 5.897 10 Si 1.012 2.988 11 H -0.297 1.297 12 H -0.269 1.269 13 H -0.294 1.294 14 C 0.146 3.854 15 C -0.146 4.146 16 C 0.164 3.836 17 H 0.083 0.917 18 N -0.712 5.712 19 C 0.494 3.506 20 O -0.524 6.524 21 C 0.080 3.920 22 N -0.496 5.496 23 C 0.418 3.582 24 O -0.438 6.438 25 N -0.294 5.294 26 N -0.296 5.296 27 C 0.417 3.583 28 O -0.432 6.432 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.267 0.733 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.398 0.602 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.417 0.583 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 16.213 15.119 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 C -0.195 4.195 4 C 0.030 3.970 5 N -0.318 5.318 6 C -0.490 4.490 7 H 0.082 0.918 8 C -0.198 4.198 9 N -0.533 5.533 10 Si 0.841 3.159 11 H -0.225 1.225 12 H -0.195 1.195 13 H -0.220 1.220 14 C 0.020 3.980 15 C -0.186 4.186 16 C 0.061 3.939 17 H 0.101 0.899 18 N -0.364 5.364 19 C 0.277 3.723 20 O -0.400 6.400 21 C -0.047 4.047 22 N -0.216 5.216 23 C 0.108 3.892 24 O -0.239 6.239 25 N -0.138 5.138 26 N -0.140 5.140 27 C 0.107 3.893 28 O -0.232 6.232 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.233 0.767 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.276 0.724 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.829 13.945 16.175 21.435 hybrid contribution -2.204 2.038 -1.350 3.292 sum -0.375 15.983 14.825 21.803 Atomic orbital electron populations 1.21775 0.94102 1.03216 0.99658 1.21440 0.96662 0.94725 0.96340 1.21806 1.00920 0.95648 1.01082 1.21059 0.96134 0.85937 0.93825 1.44348 1.65575 1.06177 1.15730 1.19987 1.23215 0.93557 1.12237 0.91754 1.26091 1.03242 0.93421 0.97048 1.70898 0.99914 1.36845 1.45648 0.84695 0.78200 0.75973 0.77052 1.22509 1.19512 1.22035 1.21346 0.97168 0.94899 0.84625 1.22534 1.01475 0.94778 0.99856 1.21048 0.99411 0.91537 0.81942 0.89860 1.46246 1.29406 1.50534 1.10169 1.20523 0.84513 0.82537 0.84757 1.90805 1.24903 1.39961 1.84308 1.21763 0.94574 1.03385 0.85021 1.46585 1.23256 1.26398 1.25401 1.21283 0.91030 0.88147 0.88772 1.84878 1.36724 1.29379 1.72952 1.78371 1.01525 1.12200 1.21691 1.78354 1.19997 1.05642 1.09991 1.21238 0.84843 0.91174 0.92094 1.85030 1.67088 1.13835 1.57210 0.94721 0.92947 0.90512 0.92858 0.92473 0.93458 0.96046 0.91832 0.92296 0.91321 0.95076 0.91406 0.92699 0.76667 0.85782 0.85284 0.72370 0.73287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 7.84 37.16 0.29 -1.45 16 2 C -0.09 -1.23 0.56 -154.16 -0.09 -1.32 16 3 C -0.14 -1.52 8.31 37.16 0.31 -1.21 16 4 C 0.16 2.85 5.24 -3.48 -0.02 2.83 16 5 N -0.60 -13.04 2.14 -172.05 -0.37 -13.41 16 6 C -0.36 -9.45 9.70 -15.06 -0.15 -9.60 16 7 H 0.06 1.80 8.06 -52.49 -0.42 1.38 16 8 C 0.01 0.18 4.81 -17.43 -0.08 0.10 16 9 N -0.90 -26.42 13.70 55.49 0.76 -25.66 16 10 Si 1.01 24.64 27.00 -169.99 -4.59 20.05 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.09 4.73 56.52 0.27 -5.82 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 C 0.15 3.01 4.36 -3.71 -0.02 3.00 16 15 C -0.15 -2.41 5.31 -26.61 -0.14 -2.55 16 16 C 0.16 2.32 1.57 -67.89 -0.11 2.21 16 17 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 18 N -0.71 -7.22 4.29 -53.77 -0.23 -7.45 16 19 C 0.49 5.35 7.86 -10.99 -0.09 5.26 16 20 O -0.52 -8.33 16.09 5.56 0.09 -8.24 16 21 C 0.08 0.54 6.49 -5.19 -0.03 0.50 16 22 N -0.50 -4.93 2.25 -121.35 -0.27 -5.20 16 23 C 0.42 4.79 9.15 -88.82 -0.81 3.98 16 24 O -0.44 -3.84 13.57 -18.59 -0.25 -4.09 16 25 N -0.29 -4.20 12.72 29.65 0.38 -3.83 16 26 N -0.30 -4.19 12.72 29.66 0.38 -3.81 16 27 C 0.42 4.65 9.15 -88.80 -0.81 3.84 16 28 O -0.43 -3.47 13.58 -18.57 -0.25 -3.73 16 29 H 0.03 0.35 6.58 -51.93 -0.34 0.00 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.28 5.97 -51.93 -0.31 0.97 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.43 7.36 -51.93 -0.38 0.04 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 37 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 38 H 0.07 1.55 5.81 -51.93 -0.30 1.25 16 39 H 0.03 0.67 6.60 -51.93 -0.34 0.32 16 40 H 0.07 1.12 6.34 -51.93 -0.33 0.79 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.40 2.91 6.66 -40.82 -0.27 2.64 16 43 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.42 2.22 9.06 45.56 0.41 2.63 16 46 H 0.41 0.65 9.06 45.56 0.41 1.07 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -36.86 370.11 -5.46 -42.31 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.93 Total: 1.89 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.74 Total: 5.58 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.64 Total: -59.36 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.41 Total: -16.05 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.59 Total: 20.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.86 -5.46 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941185694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.266 kcal (2) G-P(sol) polarization free energy of solvation -36.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds