Wall clock time and date at job start Tue Mar 31 2020 23:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.52817 * 2 1 4 4 C 1.53624 * 109.63347 * 239.91643 * 2 1 3 5 5 N 1.46935 * 108.54215 * 294.86737 * 4 2 1 6 6 C 1.36936 * 120.63023 * 126.36943 * 5 4 2 7 7 H 1.07997 * 119.99885 * 331.90800 * 6 5 4 8 8 C 1.38811 * 119.99888 * 151.90505 * 6 5 4 9 9 N 1.31621 * 119.99732 * 143.81479 * 8 6 5 10 10 Si 1.86800 * 120.00184 * 323.80699 * 8 6 5 11 11 H 1.48500 * 109.47418 * 270.00390 * 10 8 6 12 12 H 1.48495 * 109.46857 * 30.00411 * 10 8 6 13 13 H 1.48500 * 109.47142 * 149.99996 * 10 8 6 14 14 C 1.46921 * 118.73813 * 306.09085 * 5 4 2 15 15 C 1.53197 * 108.77446 * 53.86230 * 14 5 4 16 16 C 1.53035 * 109.31261 * 305.36155 * 15 14 5 17 17 H 1.08995 * 109.46298 * 301.36249 * 16 15 14 18 18 N 1.46503 * 109.45954 * 181.38326 * 16 15 14 19 19 C 1.34770 * 119.99728 * 85.00212 * 18 16 15 20 20 O 1.21274 * 120.00400 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99731 * 179.97438 * 19 18 16 22 22 N 1.46506 * 109.47190 * 179.97438 * 21 19 18 23 23 C 1.36366 * 125.96614 * 269.69720 * 22 21 19 24 24 O 1.35631 * 125.98550 * 0.03124 * 23 22 21 25 25 N 1.30902 * 108.02435 * 179.88247 * 23 22 21 26 26 N 1.40108 * 107.94112 * 0.37353 * 25 23 22 27 27 C 1.30910 * 107.94239 * 359.76043 * 26 25 23 28 28 O 1.35624 * 125.99620 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.46953 * 299.92128 * 1 2 3 30 30 H 1.09003 * 109.46767 * 59.91552 * 1 2 3 31 31 H 1.08995 * 109.47017 * 179.91716 * 1 2 3 32 32 H 1.09000 * 109.46893 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46820 * 300.08310 * 3 2 1 34 34 H 1.08993 * 109.46768 * 60.08014 * 3 2 1 35 35 H 1.09002 * 109.74302 * 175.13573 * 4 2 1 36 36 H 1.08998 * 109.66999 * 54.55979 * 4 2 1 37 37 H 0.96997 * 120.00048 * 354.91621 * 9 8 6 38 38 H 1.09005 * 109.58605 * 173.64670 * 14 5 4 39 39 H 1.08991 * 109.58948 * 294.07495 * 14 5 4 40 40 H 1.09001 * 109.49437 * 65.31690 * 15 14 5 41 41 H 1.08997 * 109.50082 * 185.41054 * 15 14 5 42 42 H 0.96997 * 119.99793 * 265.00159 * 18 16 15 43 43 H 1.08996 * 109.47516 * 299.99811 * 21 19 18 44 44 H 1.08997 * 109.47171 * 60.00439 * 21 19 18 45 45 H 0.96699 * 114.00120 * 90.00819 * 24 23 22 46 46 H 0.96701 * 114.00000 * 270.03022 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0462 -0.7253 -1.2520 5 7 1.6514 -2.1382 -1.1696 6 6 0.9638 -2.7314 -2.1945 7 1 0.3242 -2.1376 -2.8305 8 6 1.0890 -4.0960 -2.4159 9 7 0.0490 -4.7957 -2.8173 10 14 2.7336 -4.9393 -2.1445 11 1 3.5169 -4.9145 -3.4059 12 1 3.4856 -4.2266 -1.0808 13 1 2.5057 -6.3472 -1.7310 14 6 2.0139 -2.9041 0.0307 15 6 1.5029 -2.1558 1.2660 16 6 2.0408 -0.7232 1.2484 17 1 3.1305 -0.7446 1.2350 18 7 1.5811 -0.0145 2.4453 19 6 2.2705 -0.1218 3.5983 20 8 3.2717 -0.8046 3.6450 21 6 1.7979 0.6076 4.8295 22 7 2.7103 0.3306 5.9417 23 6 2.5949 -0.6918 6.8367 24 8 1.6158 -1.6303 6.8526 25 7 3.5963 -0.6106 7.6758 26 7 4.3722 0.4990 7.3157 27 6 3.8203 1.0536 6.2661 28 8 4.2724 2.1545 5.6158 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1315 1.4409 -0.0005 33 1 1.6774 1.9566 -0.8892 34 1 1.6798 1.9557 0.8907 35 1 3.1327 -0.6517 -1.2985 36 1 1.6089 -0.2752 -2.1432 37 1 -0.8216 -4.3737 -2.8875 38 1 1.5552 -3.8919 -0.0138 39 1 3.0978 -3.0044 0.0867 40 1 0.4132 -2.1355 1.2540 41 1 1.8479 -2.6629 2.1670 42 1 0.7805 0.5319 2.4079 43 1 1.7799 1.6795 4.6323 44 1 0.7951 0.2691 5.0898 45 1 1.8181 -2.4186 6.3305 46 1 3.9151 2.9864 5.9554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941185694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:36 Heat of formation + Delta-G solvation = -24.902091 kcal Electronic energy + Delta-G solvation = -31077.089626 eV Core-core repulsion = 26811.392756 eV Total energy + Delta-G solvation = -4265.696870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38136 -41.43062 -39.70388 -39.15406 -38.06047 -36.51334 -35.37403 -34.62214 -33.69910 -31.96658 -30.69917 -29.22409 -28.17139 -27.71658 -26.27061 -23.88103 -23.86470 -23.06534 -22.74646 -21.73598 -20.23489 -19.85526 -19.59748 -19.29830 -18.49034 -17.92564 -17.32914 -17.01931 -16.45094 -16.40777 -16.17925 -15.95275 -15.63184 -15.42195 -15.30759 -14.97720 -14.57290 -14.31186 -14.01215 -13.92740 -13.86703 -13.44761 -13.37307 -13.03107 -12.89759 -12.72901 -12.64412 -12.55679 -12.46665 -12.26868 -11.87704 -11.76457 -11.72960 -11.60100 -11.48415 -11.37185 -11.14890 -10.76473 -10.55491 -10.40295 -10.09968 -9.00741 -8.55721 -5.41238 0.37963 0.73640 1.13010 1.43283 1.50082 1.53209 1.71341 2.01020 2.21397 2.57068 2.84412 2.95373 3.41498 3.47371 3.54509 3.64911 3.86794 3.97976 4.05522 4.15823 4.25748 4.26480 4.33789 4.48987 4.55838 4.66625 4.73917 4.77596 4.85027 4.90835 4.98209 5.00460 5.08262 5.13899 5.20550 5.24114 5.28900 5.38204 5.44835 5.64642 5.87606 6.18218 6.29617 6.38890 6.48264 6.78082 6.90325 7.12132 7.63298 8.15113 8.81822 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003109 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.410620 B = 9005.057300 C = 9735.449889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.130 4.130 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.338 4.338 7 H 0.037 0.963 8 C -0.044 4.044 9 N -0.937 5.937 10 Si 1.050 2.950 11 H -0.298 1.298 12 H -0.246 1.246 13 H -0.301 1.301 14 C 0.143 3.857 15 C -0.134 4.134 16 C 0.177 3.823 17 H 0.061 0.939 18 N -0.696 5.696 19 C 0.496 3.504 20 O -0.577 6.577 21 C 0.085 3.915 22 N -0.493 5.493 23 C 0.423 3.577 24 O -0.434 6.434 25 N -0.339 5.339 26 N -0.343 5.343 27 C 0.429 3.571 28 O -0.434 6.434 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.022 0.978 36 H 0.054 0.946 37 H 0.255 0.745 38 H 0.043 0.957 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.418 0.582 43 H 0.171 0.829 44 H 0.164 0.836 45 H 0.431 0.569 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 19.379 16.761 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.081 4.081 3 C -0.188 4.188 4 C 0.025 3.975 5 N -0.330 5.330 6 C -0.467 4.467 7 H 0.055 0.945 8 C -0.242 4.242 9 N -0.577 5.577 10 Si 0.877 3.123 11 H -0.226 1.226 12 H -0.171 1.171 13 H -0.228 1.228 14 C 0.017 3.983 15 C -0.174 4.174 16 C 0.072 3.928 17 H 0.080 0.920 18 N -0.348 5.348 19 C 0.281 3.719 20 O -0.456 6.456 21 C -0.041 4.041 22 N -0.213 5.213 23 C 0.111 3.889 24 O -0.238 6.238 25 N -0.183 5.183 26 N -0.187 5.187 27 C 0.118 3.882 28 O -0.238 6.238 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.256 0.744 43 H 0.188 0.812 44 H 0.181 0.819 45 H 0.293 0.707 46 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 1.384 17.197 17.841 24.818 hybrid contribution -2.109 1.161 -1.918 3.078 sum -0.725 18.359 15.923 24.312 Atomic orbital electron populations 1.21711 0.93391 1.01408 1.01718 1.21260 0.97006 0.96051 0.93749 1.21758 1.00637 0.93313 1.03077 1.21260 0.96240 0.83910 0.96140 1.44387 1.65615 1.07770 1.15223 1.19856 1.21659 0.93171 1.12025 0.94498 1.26908 1.04795 0.94700 0.97828 1.70984 0.99980 1.37330 1.49363 0.84161 0.75530 0.75062 0.77513 1.22611 1.17062 1.22811 1.21286 0.96589 0.94427 0.86022 1.22325 1.01389 0.96179 0.97525 1.20588 0.98005 0.90466 0.83787 0.92031 1.45890 1.29997 1.50115 1.08846 1.21217 0.83415 0.81618 0.85621 1.90808 1.27365 1.42321 1.85150 1.22111 0.94805 1.05509 0.81688 1.46622 1.23339 1.25649 1.25692 1.21331 0.90537 0.88495 0.88496 1.84861 1.35739 1.29678 1.73481 1.78237 1.03100 1.13239 1.23733 1.78227 1.21483 1.06640 1.12354 1.21282 0.84412 0.91465 0.91070 1.85001 1.67407 1.14433 1.56924 0.90317 0.93309 0.94188 0.93330 0.91829 0.90170 0.95970 0.92698 0.93542 0.93844 0.95653 0.91236 0.92352 0.74354 0.81192 0.81887 0.70673 0.69964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 7.84 71.98 0.56 -2.40 16 2 C -0.08 -1.95 0.56 -51.96 -0.03 -1.98 16 3 C -0.13 -2.33 8.31 71.98 0.60 -1.73 16 4 C 0.15 5.31 5.24 86.51 0.45 5.76 16 5 N -0.61 -26.66 2.14 -698.25 -1.49 -28.16 16 6 C -0.34 -18.09 9.70 84.03 0.82 -17.28 16 7 H 0.04 2.16 8.06 -2.91 -0.02 2.13 16 8 C -0.04 -2.47 4.81 84.86 0.41 -2.06 16 9 N -0.94 -57.33 13.70 21.65 0.30 -57.03 16 10 Si 1.05 51.17 27.00 68.60 1.85 53.02 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 12 H -0.25 -10.90 4.73 99.48 0.47 -10.43 16 13 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 14 C 0.14 5.87 4.36 86.37 0.38 6.25 16 15 C -0.13 -4.24 5.31 30.67 0.16 -4.07 16 16 C 0.18 4.51 1.57 45.02 0.07 4.58 16 17 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 18 N -0.70 -10.89 4.29 -442.41 -1.90 -12.79 16 19 C 0.50 8.67 7.86 87.66 0.69 9.36 16 20 O -0.58 -16.96 16.09 -3.01 -0.05 -17.01 16 21 C 0.08 0.67 6.49 85.63 0.56 1.23 16 22 N -0.49 -8.17 2.25 -759.26 -1.71 -9.88 16 23 C 0.42 8.88 9.15 179.72 1.65 10.52 16 24 O -0.43 -6.58 13.57 -89.44 -1.21 -7.80 16 25 N -0.34 -9.54 12.72 -173.66 -2.21 -11.75 16 26 N -0.34 -9.46 12.72 -173.65 -2.21 -11.67 16 27 C 0.43 8.53 9.15 179.71 1.65 10.17 16 28 O -0.43 -5.47 13.58 -89.37 -1.21 -6.68 16 29 H 0.08 1.16 6.58 -2.39 -0.02 1.14 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.26 5.97 -2.39 -0.01 1.25 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.08 0.94 7.36 -2.39 -0.02 0.92 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 37 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 38 H 0.04 1.99 5.81 -2.38 -0.01 1.98 16 39 H 0.03 1.08 6.60 -2.39 -0.02 1.06 16 40 H 0.07 2.19 6.34 -2.39 -0.02 2.18 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.42 3.45 6.66 -92.71 -0.62 2.84 16 43 H 0.17 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.43 3.71 9.06 -74.06 -0.67 3.04 16 46 H 0.44 -0.42 9.06 -74.06 -0.67 -1.09 16 Total: -1.00 -86.73 370.11 -3.06 -89.79 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -1.17 Total: 1.61 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 7.96 Total: 18.34 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -9.22 Total: -131.28 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -2.48 Total: -31.49 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 1.85 Total: 53.02 kcal Total: -86.73 -3.06 -89.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941185694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.887 kcal (2) G-P(sol) polarization free energy of solvation -86.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds