Wall clock time and date at job start Tue Mar 31 2020 22:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34654 * 125.79924 * 2 1 4 4 H 0.96999 * 124.85789 * 0.21960 * 3 2 1 5 5 C 1.36454 * 110.29611 * 180.26336 * 3 2 1 6 6 C 1.34480 * 108.85619 * 359.97438 * 5 3 2 7 7 C 1.36768 * 125.79955 * 180.30495 * 2 1 3 8 8 C 1.47256 * 126.94368 * 359.73604 * 7 2 1 9 9 O 1.21620 * 120.00298 * 0.02562 * 8 7 2 10 10 N 1.34779 * 120.00174 * 179.97438 * 8 7 2 11 11 C 1.46495 * 120.00320 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47184 * 180.02562 * 11 10 8 13 13 H 1.08991 * 109.44263 * 64.91184 * 12 11 10 14 14 C 1.50810 * 109.43491 * 184.78967 * 12 11 10 15 15 C 1.38839 * 117.80121 * 289.13146 * 14 12 11 16 16 C 1.37956 * 120.51264 * 179.56222 * 15 14 12 17 17 C 1.38264 * 119.71436 * 359.96529 * 16 15 14 18 18 C 1.37904 * 119.82547 * 0.22057 * 17 16 15 19 19 C 1.37675 * 122.35896 * 109.02568 * 14 12 11 20 20 C 1.50604 * 122.86937 * 0.72555 * 19 14 12 21 21 C 1.52800 * 110.85395 * 340.28607 * 20 19 14 22 22 N 1.46688 * 109.43503 * 304.99184 * 12 11 10 23 23 C 1.36940 * 121.34813 * 104.21797 * 22 12 11 24 24 H 1.08004 * 119.99901 * 333.26043 * 23 22 12 25 25 C 1.38814 * 120.00016 * 153.25386 * 23 22 12 26 26 N 1.31615 * 119.99795 * 341.51779 * 25 23 22 27 27 Si 1.86798 * 119.99692 * 161.51836 * 25 23 22 28 28 H 1.48502 * 109.47416 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47176 * 120.00273 * 27 25 23 30 30 H 1.48508 * 109.46886 * 239.99931 * 27 25 23 31 31 H 1.08998 * 109.47129 * 269.69465 * 1 2 3 32 32 H 1.09001 * 109.46931 * 29.69577 * 1 2 3 33 33 H 1.09000 * 109.47351 * 149.69372 * 1 2 3 34 34 H 1.08006 * 125.56846 * 179.97438 * 5 3 2 35 35 H 1.07997 * 126.83375 * 179.97438 * 6 5 3 36 36 H 0.97005 * 119.99982 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46886 * 299.99387 * 11 10 8 38 38 H 1.08995 * 109.47712 * 59.99581 * 11 10 8 39 39 H 1.07999 * 119.74376 * 359.58659 * 15 14 12 40 40 H 1.08003 * 120.14149 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.08755 * 180.23621 * 17 16 15 42 42 H 1.08002 * 119.70613 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.20191 * 219.93704 * 20 19 14 44 44 H 1.08994 * 109.16291 * 100.61359 * 20 19 14 45 45 H 1.09002 * 109.77642 * 287.84554 * 21 20 19 46 46 H 1.09000 * 109.82150 * 167.06114 * 21 20 19 47 47 H 0.97005 * 119.99576 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 0.0031 5 6 3.6095 0.7274 -0.0059 6 6 3.6882 -0.6151 -0.0092 7 6 2.3070 -1.1093 -0.0059 8 6 1.8702 -2.5155 -0.0080 9 8 0.6840 -2.7839 -0.0047 10 7 2.7849 -3.5054 -0.0145 11 6 2.3504 -4.9044 -0.0171 12 6 3.5767 -5.8193 -0.0240 13 1 4.1312 -5.6897 0.9053 14 6 3.1310 -7.2549 -0.1454 15 6 2.5015 -7.8324 0.9491 16 6 2.0630 -9.1393 0.8959 17 6 2.2514 -9.8790 -0.2569 18 6 2.8799 -9.3078 -1.3433 19 6 3.3261 -7.9927 -1.2913 20 6 4.0123 -7.4396 -2.5126 21 6 4.0046 -5.9117 -2.4958 22 7 4.4384 -5.4721 -1.1592 23 6 5.5991 -4.7671 -0.9830 24 1 5.7022 -4.0982 -0.1413 25 6 6.6432 -4.9123 -1.8862 26 7 6.6837 -5.9595 -2.6824 27 14 7.9906 -3.6213 -1.9713 28 1 7.7145 -2.5513 -0.9794 29 1 9.3003 -4.2521 -1.6681 30 1 8.0280 -3.0340 -3.3348 31 1 -0.3633 -0.0055 1.0276 32 1 -0.3633 0.8927 -0.5091 33 1 -0.3634 -0.8872 -0.5186 34 1 4.4498 1.4061 -0.0076 35 1 4.5890 -1.2108 -0.0144 36 1 3.7311 -3.2914 -0.0182 37 1 1.7554 -5.1017 0.8746 38 1 1.7485 -5.0963 -0.9053 39 1 2.3538 -7.2538 1.8490 40 1 1.5744 -9.5826 1.7511 41 1 1.9070 -10.9015 -0.3064 42 1 3.0264 -9.8875 -2.2427 43 1 3.4941 -7.7908 -3.4049 44 1 5.0433 -7.7926 -2.5344 45 1 2.9974 -5.5458 -2.6956 46 1 4.6921 -5.5303 -3.2507 47 1 7.4132 -6.0607 -3.3138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948902049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:57 Heat of formation + Delta-G solvation = 52.003375 kcal Electronic energy + Delta-G solvation = -29740.343358 eV Core-core repulsion = 25888.830622 eV Total energy + Delta-G solvation = -3851.512736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05896 -39.46245 -38.36980 -36.18333 -33.99115 -32.28992 -32.02406 -31.39524 -30.78038 -29.83169 -28.56104 -27.03327 -26.06262 -24.22129 -22.66863 -22.22835 -21.69126 -21.05810 -20.40327 -19.12713 -18.47596 -17.56001 -16.75799 -15.87046 -15.59224 -15.32668 -15.15596 -14.88409 -14.46017 -14.27730 -14.07481 -13.64814 -13.56490 -13.35205 -13.10437 -12.88909 -12.64537 -12.53059 -12.50755 -12.41562 -12.25160 -12.09638 -11.65341 -11.43375 -11.18007 -11.06361 -11.01811 -10.81632 -10.65392 -10.37739 -10.05928 -9.81381 -9.51486 -9.30350 -8.71997 -8.56700 -8.32721 -8.19751 -7.98139 -7.85996 -6.78524 -5.88766 -3.31832 1.92632 1.99866 2.00282 2.60656 3.21605 3.32000 3.39616 3.41408 3.99319 4.06632 4.35954 4.39806 4.92755 5.09685 5.26578 5.27234 5.30350 5.41590 5.46615 5.50575 5.51988 5.63080 5.64640 5.72389 5.89576 5.99264 6.04354 6.05301 6.06874 6.16438 6.30206 6.41399 6.44443 6.50775 6.61031 6.66364 6.79433 6.82956 6.91383 7.00733 7.05629 7.06926 7.20996 7.39514 7.42608 7.52339 7.58578 7.66457 7.73031 8.31637 8.34072 8.94375 9.09118 9.71095 10.30640 11.18578 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.004540 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.626486 B = 6165.593209 C = 8643.091602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.094 3.906 3 N -0.556 5.556 4 H 0.412 0.588 5 C -0.026 4.026 6 C -0.159 4.159 7 C -0.226 4.226 8 C 0.584 3.416 9 O -0.570 6.570 10 N -0.701 5.701 11 C 0.117 3.883 12 C 0.193 3.807 13 H 0.076 0.924 14 C -0.078 4.078 15 C -0.118 4.118 16 C -0.140 4.140 17 C -0.129 4.129 18 C -0.135 4.135 19 C -0.039 4.039 20 C -0.096 4.096 21 C 0.165 3.835 22 N -0.579 5.579 23 C -0.255 4.255 24 H 0.068 0.932 25 C 0.010 3.990 26 N -0.891 5.891 27 Si 0.901 3.099 28 H -0.276 1.276 29 H -0.292 1.292 30 H -0.289 1.289 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.410 0.590 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.101 0.899 45 H 0.007 0.993 46 H 0.094 0.906 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 6.922 4.734 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.023 4.023 3 N -0.153 5.153 4 H 0.248 0.752 5 C -0.152 4.152 6 C -0.183 4.183 7 C -0.236 4.236 8 C 0.373 3.627 9 O -0.452 6.452 10 N -0.351 5.351 11 C -0.009 4.009 12 C 0.084 3.916 13 H 0.094 0.906 14 C -0.080 4.080 15 C -0.137 4.137 16 C -0.158 4.158 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.039 4.039 20 C -0.135 4.135 21 C 0.040 3.960 22 N -0.299 5.299 23 C -0.384 4.384 24 H 0.086 0.914 25 C -0.190 4.190 26 N -0.535 5.535 27 Si 0.731 3.269 28 H -0.201 1.201 29 H -0.219 1.219 30 H -0.216 1.216 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.184 0.816 35 H 0.167 0.833 36 H 0.247 0.753 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.025 0.975 46 H 0.112 0.888 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.632 6.813 4.602 11.920 hybrid contribution 1.315 0.876 -0.109 1.584 sum -7.316 7.688 4.493 11.525 Atomic orbital electron populations 1.20525 0.87254 1.03908 1.03152 1.20284 0.93554 0.85715 1.02744 1.41541 1.06277 1.08116 1.59322 0.75222 1.21680 0.85480 0.96515 1.11561 1.22209 0.96281 0.93647 1.06195 1.20253 0.93156 0.92378 1.17817 1.17334 0.85342 0.84138 0.75922 1.90668 1.16874 1.84655 1.52974 1.45699 1.10564 1.05495 1.73385 1.21823 0.97635 0.80780 1.00707 1.19625 0.90779 0.87609 0.93566 0.90583 1.20103 0.97782 0.96948 0.93203 1.21098 0.99104 0.95270 0.98233 1.20871 1.02187 0.94836 0.97887 1.20902 1.00628 0.99217 0.93949 1.21189 1.00281 0.95292 0.98521 1.19868 0.95192 0.92927 0.95944 1.21000 1.00976 0.99652 0.91845 1.20787 0.95791 0.90597 0.88839 1.44105 1.22219 1.63537 1.00064 1.19061 0.90937 1.16852 1.11521 0.91427 1.24985 0.96876 0.96756 1.00382 1.69981 1.32360 1.26037 1.25073 0.86261 0.81693 0.81383 0.77609 1.20094 1.21872 1.21598 0.90789 0.92295 0.88008 0.81576 0.83338 0.75257 0.92634 0.92317 0.86764 0.87007 0.87122 0.86954 0.93411 0.88094 0.97518 0.88772 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.87 36.01 0.36 -0.70 16 2 C 0.09 1.28 7.17 -81.89 -0.59 0.70 16 3 N -0.56 -5.87 5.90 -9.11 -0.05 -5.92 16 4 H 0.41 2.76 8.96 -40.82 -0.37 2.40 16 5 C -0.03 -0.30 11.89 -16.82 -0.20 -0.50 16 6 C -0.16 -2.35 10.56 -37.50 -0.40 -2.75 16 7 C -0.23 -3.73 6.29 -103.35 -0.65 -4.38 16 8 C 0.58 11.12 7.81 -12.59 -0.10 11.02 16 9 O -0.57 -11.89 14.82 5.26 0.08 -11.81 16 10 N -0.70 -13.25 5.38 -61.44 -0.33 -13.58 16 11 C 0.12 2.24 5.01 -4.04 -0.02 2.22 16 12 C 0.19 3.87 2.50 -68.93 -0.17 3.70 16 13 H 0.08 1.54 7.98 -51.93 -0.41 1.12 16 14 C -0.08 -1.52 5.17 -104.55 -0.54 -2.06 16 15 C -0.12 -2.01 9.33 -39.46 -0.37 -2.37 16 16 C -0.14 -2.16 10.05 -39.67 -0.40 -2.55 16 17 C -0.13 -2.01 10.04 -39.69 -0.40 -2.40 16 18 C -0.13 -2.34 9.59 -39.43 -0.38 -2.72 16 19 C -0.04 -0.78 5.76 -104.60 -0.60 -1.38 16 20 C -0.10 -2.03 5.77 -28.03 -0.16 -2.20 16 21 C 0.17 3.76 5.46 -3.74 -0.02 3.74 16 22 N -0.58 -13.15 2.30 -166.30 -0.38 -13.53 16 23 C -0.25 -6.22 8.73 -15.06 -0.13 -6.35 16 24 H 0.07 1.59 7.29 -52.48 -0.38 1.21 16 25 C 0.01 0.25 4.93 -17.43 -0.09 0.16 16 26 N -0.89 -23.53 10.13 55.49 0.56 -22.96 16 27 Si 0.90 20.14 29.59 -169.99 -5.03 15.11 16 28 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.44 6.48 -51.93 -0.34 1.10 16 34 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.15 2.21 7.70 -52.49 -0.40 1.80 16 36 H 0.41 7.80 5.80 -40.82 -0.24 7.56 16 37 H 0.06 1.01 8.03 -51.93 -0.42 0.59 16 38 H 0.06 1.22 7.54 -51.93 -0.39 0.83 16 39 H 0.11 1.71 8.05 -52.49 -0.42 1.29 16 40 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.75 8.05 -52.49 -0.42 1.33 16 43 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 44 H 0.10 2.41 7.12 -51.93 -0.37 2.04 16 45 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 46 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 47 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -29.81 378.69 -10.84 -40.65 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.53 Total: 15.17 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.86 Total: -8.83 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.21 Total: -56.00 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.81 -10.84 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948902049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.654 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds