Wall clock time and date at job start Tue Mar 31 2020 22:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34660 * 125.80396 * 2 1 4 4 H 0.97000 * 124.85201 * 0.05531 * 3 2 1 5 5 C 1.36445 * 110.29849 * 180.30360 * 3 2 1 6 6 C 1.34486 * 108.85831 * 359.72867 * 5 3 2 7 7 C 1.36775 * 125.80242 * 179.83948 * 2 1 3 8 8 C 1.47263 * 126.93680 * 359.97438 * 7 2 1 9 9 O 1.21620 * 120.00501 * 359.71296 * 8 7 2 10 10 N 1.34784 * 119.99275 * 179.71245 * 8 7 2 11 11 C 1.46501 * 119.99369 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46886 * 183.85494 * 11 10 8 13 13 H 1.08992 * 109.43465 * 299.60476 * 12 11 10 14 14 C 1.50806 * 109.43447 * 179.68817 * 12 11 10 15 15 C 1.38839 * 117.80727 * 48.70060 * 14 12 11 16 16 C 1.37961 * 120.50466 * 179.37928 * 15 14 12 17 17 C 1.38266 * 119.71643 * 359.81865 * 16 15 14 18 18 C 1.37903 * 119.82736 * 0.25708 * 17 16 15 19 19 C 1.37679 * 122.34567 * 228.56974 * 14 12 11 20 20 C 1.50590 * 122.85262 * 1.19145 * 19 14 12 21 21 C 1.52785 * 110.91313 * 340.08323 * 20 19 14 22 22 N 1.46686 * 109.39570 * 59.49363 * 12 11 10 23 23 C 1.36935 * 121.32840 * 344.40538 * 22 12 11 24 24 H 1.07998 * 119.99806 * 38.06627 * 23 22 12 25 25 C 1.38811 * 120.00032 * 218.06771 * 23 22 12 26 26 N 1.31623 * 119.99958 * 207.01993 * 25 23 22 27 27 Si 1.86800 * 120.00090 * 27.01369 * 25 23 22 28 28 H 1.48500 * 109.47017 * 95.13566 * 27 25 23 29 29 H 1.48499 * 109.47444 * 215.13586 * 27 25 23 30 30 H 1.48505 * 109.47194 * 335.14039 * 27 25 23 31 31 H 1.09000 * 109.46988 * 270.16131 * 1 2 3 32 32 H 1.08994 * 109.47136 * 30.15964 * 1 2 3 33 33 H 1.08998 * 109.47315 * 150.16358 * 1 2 3 34 34 H 1.08004 * 125.57326 * 179.75110 * 5 3 2 35 35 H 1.08001 * 126.83474 * 179.97438 * 6 5 3 36 36 H 0.96994 * 120.00443 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47298 * 63.85849 * 11 10 8 38 38 H 1.08997 * 109.47235 * 303.85752 * 11 10 8 39 39 H 1.08000 * 119.74675 * 359.35283 * 15 14 12 40 40 H 1.08002 * 120.13756 * 179.83198 * 16 15 14 41 41 H 1.08000 * 120.08549 * 180.24151 * 17 16 15 42 42 H 1.08004 * 119.70868 * 180.02562 * 18 17 16 43 43 H 1.08996 * 109.31741 * 219.60645 * 20 19 14 44 44 H 1.09004 * 108.98250 * 100.33131 * 20 19 14 45 45 H 1.09006 * 109.77334 * 287.74184 * 21 20 19 46 46 H 1.09001 * 109.82198 * 166.97517 * 21 20 19 47 47 H 0.96997 * 119.99905 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 0.0008 5 6 3.6095 0.7274 -0.0068 6 6 3.6882 -0.6152 -0.0053 7 6 2.3071 -1.1093 0.0031 8 6 1.8701 -2.5156 0.0076 9 8 0.6839 -2.7839 0.0141 10 7 2.7850 -3.5054 0.0044 11 6 2.3503 -4.9044 0.0094 12 6 3.5740 -5.8183 0.1014 13 1 4.2199 -5.6474 -0.7597 14 6 3.1253 -7.2580 0.1142 15 6 2.2112 -7.6602 -0.8504 16 6 1.7727 -8.9674 -0.8978 17 6 2.2504 -9.8843 0.0202 18 6 3.1571 -9.4856 0.9797 19 6 3.5912 -8.1667 1.0377 20 6 4.5646 -7.7989 2.1264 21 6 5.3074 -6.5092 1.7809 22 7 4.3132 -5.5202 1.3328 23 6 4.0878 -4.3677 2.0372 24 1 3.0844 -3.9795 2.1307 25 6 5.1491 -3.6984 2.6309 26 7 4.9441 -2.9541 3.6970 27 14 6.8683 -3.8540 1.9171 28 1 7.1286 -2.7151 1.0003 29 1 7.8646 -3.8408 3.0182 30 1 6.9784 -5.1298 1.1651 31 1 -0.3633 0.0029 1.0277 32 1 -0.3633 0.8885 -0.5163 33 1 -0.3634 -0.8914 -0.5113 34 1 4.4498 1.4059 -0.0121 35 1 4.5890 -1.2110 -0.0098 36 1 3.7310 -3.2915 -0.0012 37 1 1.8050 -5.1188 -0.9097 38 1 1.7004 -5.0800 0.8667 39 1 1.8403 -6.9441 -1.5687 40 1 1.0595 -9.2731 -1.6491 41 1 1.9141 -10.9101 -0.0140 42 1 3.5293 -10.2036 1.6956 43 1 5.2864 -8.6058 2.2523 44 1 4.0174 -7.6587 3.0587 45 1 6.0244 -6.6993 0.9822 46 1 5.8281 -6.1352 2.6625 47 1 5.6857 -2.4867 4.1121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948902050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:00 Heat of formation + Delta-G solvation = 67.406830 kcal Electronic energy + Delta-G solvation = -30087.256484 eV Core-core repulsion = 26236.411693 eV Total energy + Delta-G solvation = -3850.844792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82228 -39.70887 -38.25765 -36.37613 -34.11122 -32.41899 -32.11069 -31.18554 -30.60173 -30.39266 -28.85325 -26.77292 -25.90673 -24.58984 -22.94292 -22.09635 -21.80239 -20.77298 -20.13528 -19.33556 -18.75084 -17.35282 -16.61701 -16.04821 -15.72679 -15.23497 -15.19482 -14.74484 -14.65145 -14.47470 -14.12693 -13.67039 -13.41817 -13.30282 -13.03847 -12.82667 -12.73843 -12.63935 -12.39844 -12.34016 -12.27407 -12.14648 -11.90834 -11.87527 -11.36909 -11.21187 -11.11061 -10.91626 -10.69203 -10.43733 -10.01776 -9.84976 -9.53759 -9.09138 -8.57737 -8.44656 -8.41103 -8.11410 -8.05703 -7.73219 -6.82993 -6.02198 -3.41671 1.72890 1.76318 2.24712 2.85777 3.31497 3.43356 3.45402 3.48835 4.08297 4.18420 4.35209 4.51290 4.82686 5.14734 5.16992 5.18772 5.29620 5.30721 5.34558 5.41930 5.45630 5.64763 5.72462 5.76261 5.84768 5.91458 5.95496 5.99416 6.04310 6.09725 6.19371 6.24706 6.30133 6.31335 6.40318 6.47005 6.60737 6.65373 6.74311 6.81547 6.86900 6.89117 7.15429 7.16061 7.29408 7.37573 7.41440 7.75370 7.96602 8.39190 8.54722 8.92544 9.18602 9.66932 10.11617 11.11389 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.004545 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.045396 B = 6158.740720 C = 8071.125775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.090 3.910 3 N -0.557 5.557 4 H 0.410 0.590 5 C -0.030 4.030 6 C -0.149 4.149 7 C -0.217 4.217 8 C 0.588 3.412 9 O -0.575 6.575 10 N -0.689 5.689 11 C 0.142 3.858 12 C 0.195 3.805 13 H 0.047 0.953 14 C -0.076 4.076 15 C -0.118 4.118 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.130 4.130 19 C -0.050 4.050 20 C -0.104 4.104 21 C 0.144 3.856 22 N -0.598 5.598 23 C -0.270 4.270 24 H 0.091 0.909 25 C 0.047 3.953 26 N -0.883 5.883 27 Si 0.839 3.161 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.254 1.254 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.144 0.856 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -0.433 -9.091 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 N -0.153 5.153 4 H 0.246 0.754 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.227 4.227 8 C 0.377 3.623 9 O -0.458 6.458 10 N -0.339 5.339 11 C 0.018 3.982 12 C 0.088 3.912 13 H 0.064 0.936 14 C -0.078 4.078 15 C -0.136 4.136 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.050 4.050 20 C -0.142 4.142 21 C 0.019 3.981 22 N -0.322 5.322 23 C -0.398 4.398 24 H 0.108 0.892 25 C -0.155 4.155 26 N -0.522 5.522 27 Si 0.666 3.334 28 H -0.217 1.217 29 H -0.223 1.223 30 H -0.178 1.178 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.248 0.752 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.695 -0.370 -8.922 9.664 hybrid contribution 1.611 0.483 -0.041 1.682 sum -2.084 0.113 -8.963 9.203 Atomic orbital electron populations 1.20496 0.87413 1.03544 1.03192 1.20238 0.93450 0.85753 1.03228 1.41475 1.06225 1.07978 1.59616 0.75424 1.21599 0.85429 0.96473 1.12119 1.22098 0.96229 0.93490 1.05567 1.20188 0.93020 0.92356 1.17104 1.17240 0.85178 0.84143 0.75780 1.90646 1.16946 1.84685 1.53537 1.45761 1.10501 1.04915 1.72768 1.21205 0.95696 0.80496 1.00826 1.19610 0.92459 0.88483 0.90653 0.93558 1.20114 0.96515 0.96485 0.94727 1.21156 0.97646 0.96047 0.98750 1.20948 1.00820 0.93665 0.99581 1.20934 0.98380 0.99080 0.96253 1.21170 0.98772 0.95748 0.99106 1.19598 0.97300 0.92389 0.95718 1.21061 0.97001 0.99342 0.96838 1.21378 0.91015 0.87768 0.97961 1.44300 1.44559 1.19742 1.23588 1.18862 0.94531 0.99426 1.26972 0.89187 1.25450 0.97160 0.96330 0.96519 1.69956 1.31924 1.32640 1.17691 0.87519 0.86820 0.79157 0.79881 1.21669 1.22261 1.17827 0.90777 0.92554 0.88143 0.81863 0.83850 0.75155 0.92524 0.91270 0.86186 0.86667 0.86850 0.86769 0.92045 0.90431 0.94850 0.91248 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.88 36.00 0.36 -0.86 16 2 C 0.09 1.44 7.17 -81.88 -0.59 0.86 16 3 N -0.56 -7.18 5.90 -9.11 -0.05 -7.23 16 4 H 0.41 3.63 8.96 -40.82 -0.37 3.27 16 5 C -0.03 -0.42 11.89 -16.83 -0.20 -0.62 16 6 C -0.15 -2.63 10.56 -37.50 -0.40 -3.03 16 7 C -0.22 -4.13 6.29 -103.35 -0.65 -4.78 16 8 C 0.59 12.40 7.81 -12.59 -0.10 12.30 16 9 O -0.58 -13.04 14.82 5.26 0.08 -12.96 16 10 N -0.69 -14.04 3.53 -61.43 -0.22 -14.26 16 11 C 0.14 2.78 4.12 -4.04 -0.02 2.76 16 12 C 0.19 3.73 3.06 -68.93 -0.21 3.52 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.08 -1.35 5.44 -104.55 -0.57 -1.92 16 15 C -0.12 -1.81 9.06 -39.46 -0.36 -2.17 16 16 C -0.13 -1.82 10.05 -39.67 -0.40 -2.22 16 17 C -0.13 -1.75 10.04 -39.69 -0.40 -2.14 16 18 C -0.13 -1.94 9.59 -39.43 -0.38 -2.32 16 19 C -0.05 -0.86 5.76 -104.60 -0.60 -1.47 16 20 C -0.10 -1.83 5.86 -28.05 -0.16 -2.00 16 21 C 0.14 2.94 4.31 -3.76 -0.02 2.92 16 22 N -0.60 -13.08 2.49 -166.33 -0.41 -13.50 16 23 C -0.27 -6.83 7.12 -15.06 -0.11 -6.94 16 24 H 0.09 2.57 6.21 -52.49 -0.33 2.25 16 25 C 0.05 1.25 5.05 -17.43 -0.09 1.16 16 26 N -0.88 -25.32 13.97 55.49 0.78 -24.55 16 27 Si 0.84 19.61 26.50 -169.99 -4.51 15.10 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.25 -5.60 4.83 56.52 0.27 -5.33 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.56 6.47 -51.93 -0.34 1.22 16 34 H 0.16 1.77 8.06 -52.48 -0.42 1.34 16 35 H 0.14 2.58 7.70 -52.49 -0.40 2.18 16 36 H 0.41 8.50 6.30 -40.82 -0.26 8.24 16 37 H 0.06 1.00 6.65 -51.93 -0.35 0.65 16 38 H 0.07 1.54 7.84 -51.93 -0.41 1.14 16 39 H 0.12 1.67 6.70 -52.49 -0.35 1.32 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.11 1.47 8.05 -52.48 -0.42 1.05 16 43 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.03 0.67 7.08 -51.93 -0.37 0.30 16 46 H 0.07 1.51 5.74 -51.93 -0.30 1.21 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -31.65 370.20 -10.17 -41.82 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -6.53 Total: 16.93 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.88 Total: -6.93 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.09 Total: -59.53 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.51 Total: 15.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.65 -10.17 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948902050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.224 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds