Wall clock time and date at job start Tue Mar 31 2020 23:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34486 * 126.82605 * 2 1 4 4 N 1.36449 * 108.85566 * 179.97438 * 3 2 1 5 5 H 0.96997 * 124.85578 * 179.97438 * 4 3 2 6 6 C 1.34661 * 110.29877 * 0.02562 * 4 3 2 7 7 C 1.36771 * 108.39141 * 359.97438 * 6 4 3 8 8 C 1.47272 * 126.94117 * 180.26278 * 7 6 4 9 9 O 1.21624 * 120.00096 * 179.68367 * 8 7 6 10 10 N 1.34777 * 119.99736 * 359.68652 * 8 7 6 11 11 C 1.46502 * 120.00020 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47103 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.43782 * 64.92017 * 12 11 10 14 14 C 1.50807 * 109.43595 * 184.79492 * 12 11 10 15 15 C 1.38846 * 117.79793 * 289.13374 * 14 12 11 16 16 C 1.37959 * 120.50965 * 179.55906 * 15 14 12 17 17 C 1.38270 * 119.71574 * 359.97263 * 16 15 14 18 18 C 1.37903 * 119.82266 * 0.21027 * 17 16 15 19 19 C 1.37672 * 122.35905 * 109.02842 * 14 12 11 20 20 C 1.50601 * 122.86816 * 0.72614 * 19 14 12 21 21 C 1.52789 * 110.85750 * 340.28644 * 20 19 14 22 22 N 1.46685 * 109.43880 * 304.99836 * 12 11 10 23 23 C 1.36943 * 121.34805 * 104.21750 * 22 12 11 24 24 H 1.08004 * 119.99664 * 333.25861 * 23 22 12 25 25 C 1.38810 * 120.00118 * 153.25604 * 23 22 12 26 26 N 1.31615 * 119.99837 * 341.51516 * 25 23 22 27 27 Si 1.86801 * 120.00018 * 161.51141 * 25 23 22 28 28 H 1.48501 * 109.46863 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46653 * 119.99875 * 27 25 23 30 30 H 1.48494 * 109.47537 * 239.99909 * 27 25 23 31 31 H 1.08999 * 109.47099 * 270.02032 * 1 2 3 32 32 H 1.08999 * 109.47414 * 30.02587 * 1 2 3 33 33 H 1.08999 * 109.46858 * 150.02539 * 1 2 3 34 34 H 1.08003 * 125.57877 * 0.02562 * 3 2 1 35 35 H 1.07995 * 125.80667 * 180.02562 * 6 4 3 36 36 H 0.97004 * 120.00308 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46767 * 300.00086 * 11 10 8 38 38 H 1.09000 * 109.47004 * 60.00062 * 11 10 8 39 39 H 1.07996 * 119.74155 * 359.58253 * 15 14 12 40 40 H 1.07996 * 120.13735 * 179.97438 * 16 15 14 41 41 H 1.07991 * 120.08439 * 180.23949 * 17 16 15 42 42 H 1.08010 * 119.70388 * 179.97438 * 18 17 16 43 43 H 1.09004 * 109.20207 * 219.93069 * 20 19 14 44 44 H 1.08997 * 109.16447 * 100.62060 * 20 19 14 45 45 H 1.09001 * 109.77632 * 287.84774 * 21 20 19 46 46 H 1.08994 * 109.82311 * 167.06127 * 21 20 19 47 47 H 0.97009 * 120.00059 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6110 0.6555 0.0006 5 1 4.3839 1.2416 0.0003 6 6 3.6657 -0.6900 0.0004 7 6 2.3865 -1.1739 0.0003 8 6 1.9751 -2.5879 0.0054 9 8 0.7938 -2.8776 0.0105 10 7 2.9076 -3.5610 0.0047 11 6 2.4984 -4.9677 0.0104 12 6 3.7410 -5.8603 0.0088 13 1 4.2930 -5.7152 0.9374 14 6 3.3214 -7.3044 -0.1042 15 6 2.7024 -7.8867 0.9938 16 6 2.2875 -9.2016 0.9483 17 6 2.4895 -9.9447 -0.2002 18 6 3.1076 -9.3685 -1.2900 19 6 3.5300 -8.0452 -1.2458 20 6 4.2061 -7.4869 -2.4702 21 6 4.1708 -5.9595 -2.4624 22 7 4.5964 -5.5042 -1.1284 23 6 5.7442 -4.7773 -0.9564 24 1 5.8351 -4.1018 -0.1186 25 6 6.7908 -4.9089 -1.8587 26 7 6.8504 -5.9598 -2.6487 27 14 8.1147 -3.5942 -1.9516 28 1 7.8197 -2.5242 -0.9651 29 1 9.4356 -4.1995 -1.6445 30 1 8.1416 -3.0144 -3.3184 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9866 2.1060 0.0004 35 1 4.5665 -1.2857 0.0011 36 1 3.8497 -3.3300 0.0011 37 1 1.9070 -5.1704 0.9033 38 1 1.9001 -5.1757 -0.8767 39 1 2.5442 -7.3056 1.8902 40 1 1.8071 -9.6486 1.8060 41 1 2.1636 -10.9733 -0.2437 42 1 3.2647 -9.9508 -2.1860 43 1 3.6946 -7.8528 -3.3605 44 1 5.2433 -7.8214 -2.4900 45 1 3.1572 -5.6130 -2.6643 46 1 4.8513 -5.5701 -3.2195 47 1 7.5816 -6.0516 -3.2796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948986913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:52 Heat of formation + Delta-G solvation = 52.160058 kcal Electronic energy + Delta-G solvation = -29708.745563 eV Core-core repulsion = 25857.239621 eV Total energy + Delta-G solvation = -3851.505942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.00361 -39.48529 -38.37148 -36.20888 -34.01676 -32.33396 -32.27129 -31.99112 -29.89837 -29.80821 -28.46398 -26.74818 -26.40433 -24.32277 -22.74835 -22.36742 -21.82763 -21.11643 -19.62931 -19.07561 -18.51390 -18.15240 -16.80976 -15.98099 -15.67667 -15.38203 -15.06002 -14.75431 -14.48861 -14.22807 -14.09137 -13.77330 -13.55402 -13.38887 -13.29843 -12.89135 -12.56037 -12.54266 -12.48786 -12.28963 -12.15588 -12.12348 -11.68914 -11.27602 -11.19646 -11.10763 -11.05511 -10.87786 -10.68747 -10.43854 -10.11436 -9.86233 -9.55002 -9.30997 -8.62783 -8.57361 -8.25833 -8.21111 -8.13509 -7.88151 -6.83750 -5.94823 -3.38068 1.90787 1.98008 2.03242 2.53105 3.24797 3.29065 3.30807 3.34570 3.90470 4.03827 4.31679 4.34357 5.01676 5.16675 5.21522 5.26404 5.29211 5.39936 5.45033 5.49921 5.53100 5.61916 5.74584 5.89692 5.96118 5.97552 6.00053 6.02728 6.13072 6.23278 6.33910 6.40924 6.43830 6.48586 6.58469 6.63647 6.76569 6.80374 6.94227 6.99024 7.03047 7.03846 7.15835 7.35964 7.39223 7.52485 7.54130 7.62931 7.68187 8.25935 8.29142 8.92267 9.03170 9.65169 10.25410 11.12456 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.004515 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.145609 B = 6199.729861 C = 8678.274619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.113 4.113 3 C -0.034 4.034 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.051 3.949 7 C -0.222 4.222 8 C 0.583 3.417 9 O -0.561 6.561 10 N -0.706 5.706 11 C 0.117 3.883 12 C 0.193 3.807 13 H 0.076 0.924 14 C -0.079 4.079 15 C -0.118 4.118 16 C -0.139 4.139 17 C -0.128 4.128 18 C -0.135 4.135 19 C -0.039 4.039 20 C -0.096 4.096 21 C 0.165 3.835 22 N -0.579 5.579 23 C -0.257 4.257 24 H 0.067 0.933 25 C 0.010 3.990 26 N -0.889 5.889 27 Si 0.901 3.099 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.406 0.594 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.101 0.899 45 H 0.008 0.992 46 H 0.094 0.906 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 6.212 4.682 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C -0.161 4.161 4 N -0.147 5.147 5 H 0.251 0.749 6 C -0.085 4.085 7 C -0.232 4.232 8 C 0.371 3.629 9 O -0.441 6.441 10 N -0.357 5.357 11 C -0.009 4.009 12 C 0.084 3.916 13 H 0.094 0.906 14 C -0.081 4.081 15 C -0.137 4.137 16 C -0.158 4.158 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.040 4.040 20 C -0.135 4.135 21 C 0.040 3.960 22 N -0.300 5.300 23 C -0.386 4.386 24 H 0.085 0.915 25 C -0.190 4.190 26 N -0.532 5.532 27 Si 0.731 3.269 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.182 0.818 35 H 0.192 0.808 36 H 0.243 0.757 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.026 0.974 46 H 0.112 0.888 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.504 6.071 4.549 9.993 hybrid contribution 1.751 0.700 -0.107 1.888 sum -4.753 6.771 4.442 9.390 Atomic orbital electron populations 1.20156 0.89581 1.02358 1.01655 1.20533 0.95493 0.90506 1.05394 1.21498 0.82611 0.98963 1.13026 1.41476 1.08131 1.06772 1.58279 0.74852 1.22106 0.99035 0.83655 1.03722 1.20466 0.92489 0.93120 1.17124 1.17395 0.85446 0.84041 0.76058 1.90686 1.17435 1.83936 1.52033 1.45762 1.10161 1.05785 1.74042 1.21819 0.97770 0.80511 1.00795 1.19625 0.90800 0.87648 0.93477 0.90614 1.20093 0.97888 0.96880 0.93222 1.21101 0.99193 0.95198 0.98203 1.20877 1.02208 0.94736 0.97936 1.20906 1.00609 0.99201 0.93946 1.21192 1.00381 0.95201 0.98499 1.19862 0.95235 0.92899 0.95954 1.20995 1.01122 0.99500 0.91854 1.20786 0.95790 0.90612 0.88831 1.44107 1.23513 1.62177 1.00181 1.19034 0.91732 1.16023 1.11773 0.91533 1.24992 0.96788 0.96747 1.00454 1.69977 1.32139 1.25898 1.25216 0.86270 0.81734 0.81408 0.77473 1.20409 1.21774 1.21577 0.92122 0.92756 0.90292 0.81777 0.80778 0.75686 0.92588 0.92271 0.86755 0.86986 0.87101 0.86945 0.93381 0.88119 0.97439 0.88799 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.97 36.01 0.36 -0.71 16 2 C -0.11 -1.63 6.35 -102.54 -0.65 -2.28 16 3 C -0.03 -0.38 11.82 -16.82 -0.20 -0.58 16 4 N -0.55 -5.80 5.90 -12.85 -0.08 -5.87 16 5 H 0.42 2.88 8.96 -40.82 -0.37 2.51 16 6 C 0.05 0.68 11.40 -16.84 -0.19 0.49 16 7 C -0.22 -3.61 6.29 -103.35 -0.65 -4.26 16 8 C 0.58 11.04 7.81 -12.59 -0.10 10.94 16 9 O -0.56 -12.07 15.33 5.26 0.08 -11.99 16 10 N -0.71 -12.91 5.38 -61.43 -0.33 -13.24 16 11 C 0.12 2.21 5.01 -4.04 -0.02 2.19 16 12 C 0.19 3.80 2.50 -68.93 -0.17 3.63 16 13 H 0.08 1.49 7.98 -51.93 -0.41 1.08 16 14 C -0.08 -1.51 5.17 -104.55 -0.54 -2.05 16 15 C -0.12 -1.98 9.34 -39.46 -0.37 -2.35 16 16 C -0.14 -2.13 10.05 -39.67 -0.40 -2.53 16 17 C -0.13 -1.98 10.04 -39.69 -0.40 -2.38 16 18 C -0.13 -2.32 9.59 -39.43 -0.38 -2.70 16 19 C -0.04 -0.77 5.76 -104.60 -0.60 -1.37 16 20 C -0.10 -2.01 5.77 -28.04 -0.16 -2.17 16 21 C 0.17 3.69 5.46 -3.75 -0.02 3.67 16 22 N -0.58 -12.85 2.30 -166.32 -0.38 -13.24 16 23 C -0.26 -6.07 8.73 -15.06 -0.13 -6.20 16 24 H 0.07 1.50 7.29 -52.48 -0.38 1.11 16 25 C 0.01 0.25 4.93 -17.43 -0.09 0.16 16 26 N -0.89 -23.04 10.13 55.49 0.56 -22.48 16 27 Si 0.90 19.51 29.59 -169.99 -5.03 14.48 16 28 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.24 6.86 -51.93 -0.36 0.89 16 34 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.18 2.13 7.45 -52.49 -0.39 1.74 16 36 H 0.41 7.24 5.62 -40.82 -0.23 7.01 16 37 H 0.06 1.01 8.03 -51.93 -0.42 0.59 16 38 H 0.06 1.22 7.54 -51.93 -0.39 0.83 16 39 H 0.11 1.69 8.05 -52.49 -0.42 1.27 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.11 1.73 8.05 -52.48 -0.42 1.31 16 43 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.10 2.38 7.12 -51.93 -0.37 2.01 16 45 H 0.01 0.17 7.48 -51.93 -0.39 -0.22 16 46 H 0.09 2.32 5.95 -51.93 -0.31 2.01 16 47 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -29.82 379.21 -10.70 -40.52 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.53 Total: 14.62 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.71 Total: -8.51 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.23 Total: -54.82 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.82 -10.70 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948986913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.679 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds