Wall clock time and date at job start Tue Mar 31 2020 23:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34486 * 126.82605 * 2 1 4 4 N 1.36449 * 108.85566 * 179.97438 * 3 2 1 5 5 H 0.96997 * 124.85578 * 179.97438 * 4 3 2 6 6 C 1.34661 * 110.29877 * 0.02562 * 4 3 2 7 7 C 1.36771 * 108.39141 * 359.97438 * 6 4 3 8 8 C 1.47272 * 126.94117 * 180.26278 * 7 6 4 9 9 O 1.21624 * 120.00096 * 179.68367 * 8 7 6 10 10 N 1.34777 * 119.99736 * 359.68652 * 8 7 6 11 11 C 1.46502 * 120.00020 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47103 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.43782 * 64.92017 * 12 11 10 14 14 C 1.50807 * 109.43595 * 184.79492 * 12 11 10 15 15 C 1.38846 * 117.79793 * 289.13374 * 14 12 11 16 16 C 1.37959 * 120.50965 * 179.55906 * 15 14 12 17 17 C 1.38270 * 119.71574 * 359.97263 * 16 15 14 18 18 C 1.37903 * 119.82266 * 0.21027 * 17 16 15 19 19 C 1.37672 * 122.35905 * 109.02842 * 14 12 11 20 20 C 1.50601 * 122.86816 * 0.72614 * 19 14 12 21 21 C 1.52789 * 110.85750 * 340.28644 * 20 19 14 22 22 N 1.46685 * 109.43880 * 304.99836 * 12 11 10 23 23 C 1.36943 * 121.34805 * 104.21750 * 22 12 11 24 24 H 1.08004 * 119.99664 * 333.25861 * 23 22 12 25 25 C 1.38810 * 120.00118 * 153.25604 * 23 22 12 26 26 N 1.31615 * 119.99837 * 341.51516 * 25 23 22 27 27 Si 1.86801 * 120.00018 * 161.51141 * 25 23 22 28 28 H 1.48501 * 109.46863 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46653 * 119.99875 * 27 25 23 30 30 H 1.48494 * 109.47537 * 239.99909 * 27 25 23 31 31 H 1.08999 * 109.47099 * 270.02032 * 1 2 3 32 32 H 1.08999 * 109.47414 * 30.02587 * 1 2 3 33 33 H 1.08999 * 109.46858 * 150.02539 * 1 2 3 34 34 H 1.08003 * 125.57877 * 0.02562 * 3 2 1 35 35 H 1.07995 * 125.80667 * 180.02562 * 6 4 3 36 36 H 0.97004 * 120.00308 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46767 * 300.00086 * 11 10 8 38 38 H 1.09000 * 109.47004 * 60.00062 * 11 10 8 39 39 H 1.07996 * 119.74155 * 359.58253 * 15 14 12 40 40 H 1.07996 * 120.13735 * 179.97438 * 16 15 14 41 41 H 1.07991 * 120.08439 * 180.23949 * 17 16 15 42 42 H 1.08010 * 119.70388 * 179.97438 * 18 17 16 43 43 H 1.09004 * 109.20207 * 219.93069 * 20 19 14 44 44 H 1.08997 * 109.16447 * 100.62060 * 20 19 14 45 45 H 1.09001 * 109.77632 * 287.84774 * 21 20 19 46 46 H 1.08994 * 109.82311 * 167.06127 * 21 20 19 47 47 H 0.97009 * 120.00059 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6110 0.6555 0.0006 5 1 4.3839 1.2416 0.0003 6 6 3.6657 -0.6900 0.0004 7 6 2.3865 -1.1739 0.0003 8 6 1.9751 -2.5879 0.0054 9 8 0.7938 -2.8776 0.0105 10 7 2.9076 -3.5610 0.0047 11 6 2.4984 -4.9677 0.0104 12 6 3.7410 -5.8603 0.0088 13 1 4.2930 -5.7152 0.9374 14 6 3.3214 -7.3044 -0.1042 15 6 2.7024 -7.8867 0.9938 16 6 2.2875 -9.2016 0.9483 17 6 2.4895 -9.9447 -0.2002 18 6 3.1076 -9.3685 -1.2900 19 6 3.5300 -8.0452 -1.2458 20 6 4.2061 -7.4869 -2.4702 21 6 4.1708 -5.9595 -2.4624 22 7 4.5964 -5.5042 -1.1284 23 6 5.7442 -4.7773 -0.9564 24 1 5.8351 -4.1018 -0.1186 25 6 6.7908 -4.9089 -1.8587 26 7 6.8504 -5.9598 -2.6487 27 14 8.1147 -3.5942 -1.9516 28 1 7.8197 -2.5242 -0.9651 29 1 9.4356 -4.1995 -1.6445 30 1 8.1416 -3.0144 -3.3184 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9866 2.1060 0.0004 35 1 4.5665 -1.2857 0.0011 36 1 3.8497 -3.3300 0.0011 37 1 1.9070 -5.1704 0.9033 38 1 1.9001 -5.1757 -0.8767 39 1 2.5442 -7.3056 1.8902 40 1 1.8071 -9.6486 1.8060 41 1 2.1636 -10.9733 -0.2437 42 1 3.2647 -9.9508 -2.1860 43 1 3.6946 -7.8528 -3.3605 44 1 5.2433 -7.8214 -2.4900 45 1 3.1572 -5.6130 -2.6643 46 1 4.8513 -5.5701 -3.2195 47 1 7.5816 -6.0516 -3.2796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948986913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:51 Heat of formation + Delta-G solvation = 35.821926 kcal Electronic energy + Delta-G solvation = -29709.454037 eV Core-core repulsion = 25857.239621 eV Total energy + Delta-G solvation = -3852.214416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03345 -40.93440 -39.80304 -37.77077 -35.60623 -34.01593 -33.46747 -33.28616 -31.49779 -31.01052 -29.91457 -28.30271 -27.38999 -25.96437 -24.25243 -23.89325 -23.19374 -22.55046 -20.77296 -20.44081 -19.94014 -19.17562 -18.47424 -17.40036 -17.08405 -16.99460 -16.48584 -16.18922 -15.93953 -15.69642 -15.47257 -15.08616 -14.92316 -14.80381 -14.47441 -14.18081 -13.97281 -13.89711 -13.74234 -13.68256 -13.53388 -13.29589 -13.22545 -12.88900 -12.71661 -12.70608 -12.54240 -12.29138 -12.19102 -12.02444 -11.77368 -11.52853 -11.21654 -10.80536 -10.47358 -9.97683 -9.55619 -9.45847 -9.29830 -9.13408 -8.65750 -7.81285 -5.26447 0.58123 0.63052 0.84391 1.51262 1.53284 1.54797 1.61894 2.36455 2.52819 2.58171 2.67726 2.99186 3.35264 3.58774 4.01435 4.03973 4.08347 4.13258 4.19266 4.31806 4.33645 4.38080 4.42152 4.52572 4.60008 4.66400 4.78269 4.79061 4.83716 4.94591 4.98096 4.98811 5.00533 5.12701 5.19786 5.25150 5.26983 5.37841 5.54464 5.61703 5.66289 5.71052 5.71318 5.85676 5.88861 6.00448 6.01328 6.27136 6.41265 6.71863 6.84578 7.15490 7.47839 7.83369 8.42825 9.24648 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.004515 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.145609 B = 6199.729861 C = 8678.274619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C -0.006 4.006 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.059 3.941 7 C -0.264 4.264 8 C 0.577 3.423 9 O -0.597 6.597 10 N -0.704 5.704 11 C 0.131 3.869 12 C 0.199 3.801 13 H 0.075 0.925 14 C -0.103 4.103 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.142 4.142 19 C -0.071 4.071 20 C -0.084 4.084 21 C 0.171 3.829 22 N -0.587 5.587 23 C -0.256 4.256 24 H 0.080 0.920 25 C -0.041 4.041 26 N -0.918 5.918 27 Si 0.959 3.041 28 H -0.253 1.253 29 H -0.303 1.303 30 H -0.299 1.299 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.208 0.792 35 H 0.184 0.816 36 H 0.409 0.591 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.002 0.998 46 H 0.066 0.934 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 7.436 6.472 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.157 4.157 3 C -0.134 4.134 4 N -0.128 5.128 5 H 0.276 0.724 6 C -0.079 4.079 7 C -0.275 4.275 8 C 0.367 3.633 9 O -0.480 6.480 10 N -0.355 5.355 11 C 0.005 3.995 12 C 0.091 3.909 13 H 0.093 0.907 14 C -0.104 4.104 15 C -0.143 4.143 16 C -0.150 4.150 17 C -0.141 4.141 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.123 4.123 21 C 0.046 3.954 22 N -0.308 5.308 23 C -0.385 4.385 24 H 0.098 0.902 25 C -0.238 4.238 26 N -0.563 5.563 27 Si 0.789 3.211 28 H -0.177 1.177 29 H -0.231 1.231 30 H -0.227 1.227 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.224 0.776 35 H 0.201 0.799 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.143 0.857 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.084 0.916 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.719 7.331 6.367 11.808 hybrid contribution 1.760 0.308 -0.625 1.893 sum -4.959 7.639 5.743 10.767 Atomic orbital electron populations 1.20082 0.89525 1.01994 1.01616 1.20814 0.96149 0.90961 1.07761 1.22034 0.82014 0.99892 1.09488 1.41514 1.09008 1.05994 1.56329 0.72350 1.22152 0.98211 0.84982 1.02543 1.20468 0.94538 0.92066 1.20406 1.17912 0.84936 0.85349 0.75108 1.90650 1.18812 1.84690 1.53863 1.45743 1.10228 1.05533 1.73995 1.21600 0.97112 0.80913 0.99900 1.19619 0.90393 0.88615 0.92284 0.90680 1.20131 0.99549 0.96463 0.94294 1.21336 0.98712 0.96295 0.97908 1.21327 1.00739 0.93904 0.98988 1.21326 0.98988 1.00763 0.93009 1.21390 1.00334 0.94297 0.99972 1.19869 0.97146 0.94480 0.95637 1.20736 0.99653 0.98233 0.93633 1.20583 0.94445 0.91815 0.88567 1.44176 1.23494 1.62387 1.00760 1.19409 0.91685 1.15852 1.11577 0.90248 1.25691 0.98909 0.98403 1.00791 1.70146 1.32609 1.27524 1.26050 0.85334 0.78696 0.79852 0.77263 1.17671 1.23117 1.22685 0.92038 0.89936 0.93732 0.77576 0.79868 0.75428 0.91748 0.94774 0.84977 0.83378 0.83580 0.85680 0.92298 0.91316 0.98010 0.91563 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.97 9.97 71.24 0.71 -1.26 16 2 C -0.15 -4.17 6.35 -18.52 -0.12 -4.29 16 3 C -0.01 -0.12 11.82 83.12 0.98 0.87 16 4 N -0.53 -9.37 5.90 -194.56 -1.15 -10.52 16 5 H 0.44 4.19 8.96 -92.71 -0.83 3.36 16 6 C 0.06 1.49 11.40 83.92 0.96 2.44 16 7 C -0.26 -8.56 6.29 -19.04 -0.12 -8.67 16 8 C 0.58 22.55 7.81 86.62 0.68 23.23 16 9 O -0.60 -26.94 15.33 -4.11 -0.06 -27.00 16 10 N -0.70 -26.42 5.38 -466.52 -2.51 -28.93 16 11 C 0.13 5.09 5.01 86.38 0.43 5.52 16 12 C 0.20 7.97 2.50 44.24 0.11 8.08 16 13 H 0.08 2.98 7.98 -2.39 -0.02 2.96 16 14 C -0.10 -3.95 5.17 -19.82 -0.10 -4.05 16 15 C -0.12 -3.96 9.34 22.35 0.21 -3.75 16 16 C -0.13 -3.61 10.05 22.21 0.22 -3.38 16 17 C -0.12 -3.43 10.04 22.20 0.22 -3.21 16 18 C -0.14 -4.74 9.59 22.37 0.21 -4.53 16 19 C -0.07 -2.83 5.76 -19.85 -0.11 -2.95 16 20 C -0.08 -3.67 5.77 29.75 0.17 -3.50 16 21 C 0.17 8.10 5.46 86.17 0.47 8.57 16 22 N -0.59 -26.91 2.30 -680.11 -1.57 -28.48 16 23 C -0.26 -12.28 8.73 84.03 0.73 -11.55 16 24 H 0.08 3.53 7.29 -2.91 -0.02 3.51 16 25 C -0.04 -2.07 4.93 84.86 0.42 -1.65 16 26 N -0.92 -49.63 10.13 21.65 0.22 -49.41 16 27 Si 0.96 40.44 29.59 68.60 2.03 42.47 16 28 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 29 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 30 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 34 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.18 4.16 7.45 -2.91 -0.02 4.13 16 36 H 0.41 14.72 5.62 -92.71 -0.52 14.20 16 37 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 38 H 0.03 1.48 7.54 -2.39 -0.02 1.47 16 39 H 0.13 3.65 8.05 -2.91 -0.02 3.62 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.15 3.04 8.06 -2.92 -0.02 3.02 16 42 H 0.13 3.74 8.05 -2.91 -0.02 3.72 16 43 H 0.06 2.33 8.11 -2.38 -0.02 2.31 16 44 H 0.07 3.44 7.12 -2.39 -0.02 3.42 16 45 H 0.00 0.09 7.48 -2.39 -0.02 0.07 16 46 H 0.07 3.48 5.95 -2.39 -0.01 3.47 16 47 H 0.25 13.15 8.31 -92.70 -0.77 12.38 16 Total: -1.00 -68.77 379.21 2.70 -66.07 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.34 Total: 39.89 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 6.08 Total: -4.09 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -5.00 Total: -117.33 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.06 Total: -27.00 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -68.77 2.70 -66.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948986913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.891 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds