Wall clock time and date at job start Tue Mar 31 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34481 * 126.83283 * 2 1 4 4 N 1.36454 * 108.85388 * 180.26584 * 3 2 1 5 5 H 0.97000 * 124.84931 * 179.68557 * 4 3 2 6 6 C 1.34658 * 110.29764 * 359.70755 * 4 3 2 7 7 C 1.36768 * 108.39612 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.93993 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99726 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00362 * 0.03169 * 8 7 6 11 11 C 1.46495 * 119.99983 * 180.27397 * 10 8 7 12 12 C 1.53010 * 109.46809 * 185.60196 * 11 10 8 13 13 H 1.09000 * 109.43311 * 299.70551 * 12 11 10 14 14 C 1.50816 * 109.43527 * 179.79200 * 12 11 10 15 15 C 1.38906 * 117.75687 * 49.06680 * 14 12 11 16 16 C 1.37946 * 120.49532 * 179.53098 * 15 14 12 17 17 C 1.38271 * 119.71557 * 359.94179 * 16 15 14 18 18 C 1.37904 * 119.82682 * 0.21295 * 17 16 15 19 19 C 1.37606 * 122.39868 * 228.86766 * 14 12 11 20 20 C 1.50598 * 122.85347 * 0.79314 * 19 14 12 21 21 C 1.52790 * 110.85879 * 340.25341 * 20 19 14 22 22 N 1.46683 * 109.43546 * 59.62325 * 12 11 10 23 23 C 1.36934 * 121.35290 * 344.38334 * 22 12 11 24 24 H 1.08005 * 119.99930 * 36.43798 * 23 22 12 25 25 C 1.38813 * 119.99988 * 216.43682 * 23 22 12 26 26 N 1.31615 * 120.00448 * 15.25716 * 25 23 22 27 27 Si 1.86804 * 119.99711 * 195.26274 * 25 23 22 28 28 H 1.48498 * 109.47136 * 59.99872 * 27 25 23 29 29 H 1.48498 * 109.47025 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47004 * 299.99622 * 27 25 23 31 31 H 1.09006 * 109.46683 * 270.20574 * 1 2 3 32 32 H 1.09002 * 109.46977 * 30.20235 * 1 2 3 33 33 H 1.08992 * 109.46978 * 150.21031 * 1 2 3 34 34 H 1.07996 * 125.57522 * 359.96896 * 3 2 1 35 35 H 1.07993 * 125.79999 * 179.97438 * 6 4 3 36 36 H 0.97000 * 119.99640 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46962 * 305.59765 * 11 10 8 38 38 H 1.08992 * 109.47607 * 65.60532 * 11 10 8 39 39 H 1.08006 * 119.75963 * 359.48162 * 15 14 12 40 40 H 1.08005 * 120.14565 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.08547 * 180.19413 * 17 16 15 42 42 H 1.08004 * 119.70902 * 179.97438 * 18 17 16 43 43 H 1.09003 * 109.20353 * 219.90101 * 20 19 14 44 44 H 1.09001 * 109.16407 * 100.58644 * 20 19 14 45 45 H 1.09003 * 109.77441 * 287.84561 * 21 20 19 46 46 H 1.08992 * 109.82787 * 167.06376 * 21 20 19 47 47 H 0.96996 * 120.00235 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6552 -0.0060 5 1 4.3841 1.2413 -0.0116 6 6 3.6657 -0.6903 -0.0035 7 6 2.3864 -1.1741 0.0037 8 6 1.9750 -2.5880 0.0081 9 8 0.7937 -2.8776 0.0140 10 7 2.9073 -3.5612 0.0056 11 6 2.4979 -4.9678 0.0039 12 6 3.7341 -5.8589 0.1421 13 1 4.4063 -5.6792 -0.6969 14 6 3.3113 -7.3066 0.1454 15 6 2.4444 -7.7296 -0.8541 16 6 2.0290 -9.0439 -0.9104 17 6 2.4803 -9.9464 0.0348 18 6 3.3384 -9.5266 1.0294 19 6 3.7557 -8.2023 1.0908 20 6 4.6851 -7.8145 2.2105 21 6 5.4193 -6.5153 1.8828 22 7 4.4248 -5.5440 1.3973 23 6 4.1555 -4.3937 2.0896 24 1 3.1471 -4.0085 2.1253 25 6 5.1784 -3.7228 2.7456 26 7 6.4339 -4.0032 2.4673 27 14 4.7731 -2.4220 4.0235 28 1 3.9845 -3.0359 5.1219 29 1 6.0324 -1.8583 4.5727 30 1 3.9802 -1.3371 3.3912 31 1 -0.3633 0.0037 1.0277 32 1 -0.3633 0.8882 -0.5170 33 1 -0.3633 -0.8918 -0.5105 34 1 1.9869 2.1058 -0.0005 35 1 4.5664 -1.2860 -0.0074 36 1 3.8494 -3.3303 0.0006 37 1 1.8229 -5.1507 0.8399 38 1 1.9879 -5.1967 -0.9317 39 1 2.0924 -7.0242 -1.5924 40 1 1.3546 -9.3666 -1.6899 41 1 2.1613 -10.9776 -0.0055 42 1 3.6893 -10.2331 1.7671 43 1 5.4147 -8.6100 2.3626 44 1 4.1070 -7.6789 3.1246 45 1 6.1648 -6.6981 1.1089 46 1 5.9051 -6.1291 2.7788 47 1 7.1487 -3.5341 2.9254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948986914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:56 Heat of formation + Delta-G solvation = 58.960154 kcal Electronic energy + Delta-G solvation = -30047.894926 eV Core-core repulsion = 26196.683859 eV Total energy + Delta-G solvation = -3851.211067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.82942 -39.58790 -38.27833 -36.21524 -34.02439 -32.45317 -32.13644 -31.99920 -29.89842 -29.70614 -28.52390 -26.37224 -26.25439 -24.75813 -22.62926 -22.31754 -21.93410 -20.74653 -19.46279 -19.07844 -18.68918 -18.02321 -16.55969 -16.00668 -15.72228 -15.44992 -15.01701 -14.52984 -14.49528 -14.28678 -14.00175 -13.62604 -13.49360 -13.41370 -13.08807 -13.01440 -12.71646 -12.57851 -12.40628 -12.21257 -12.03950 -11.96496 -11.72843 -11.40513 -11.19285 -11.07392 -10.93419 -10.82581 -10.71434 -10.48965 -10.20063 -9.83715 -9.61958 -9.13308 -8.64654 -8.35786 -8.33423 -8.03664 -8.02563 -7.90740 -6.66352 -5.91680 -3.42632 1.80160 1.84819 2.23666 2.69151 3.31824 3.35326 3.43138 3.47662 4.04552 4.21399 4.26685 4.38466 5.17228 5.21191 5.23398 5.28133 5.33961 5.35324 5.41483 5.45664 5.54750 5.67660 5.74557 5.84949 5.92716 6.05422 6.09778 6.11803 6.17954 6.22321 6.24970 6.31048 6.37576 6.45607 6.50788 6.58390 6.67635 6.80202 6.88773 6.90990 7.10983 7.13547 7.20500 7.27688 7.35623 7.40929 7.54876 7.69582 7.78060 8.36690 8.49405 9.07076 9.13685 9.67278 10.31699 11.14479 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004429 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.830325 B = 6319.946744 C = 8114.753310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.114 4.114 3 C -0.036 4.036 4 N -0.554 5.554 5 H 0.414 0.586 6 C 0.056 3.944 7 C -0.218 4.218 8 C 0.583 3.417 9 O -0.567 6.567 10 N -0.695 5.695 11 C 0.141 3.859 12 C 0.195 3.805 13 H 0.044 0.956 14 C -0.076 4.076 15 C -0.119 4.119 16 C -0.134 4.134 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.049 4.049 20 C -0.108 4.108 21 C 0.166 3.834 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.073 0.927 25 C 0.015 3.985 26 N -0.895 5.895 27 Si 0.888 3.112 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.091 0.909 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 1.449 -6.310 7.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.164 4.164 4 N -0.148 5.148 5 H 0.250 0.750 6 C -0.080 4.080 7 C -0.229 4.229 8 C 0.371 3.629 9 O -0.449 6.449 10 N -0.345 5.345 11 C 0.017 3.983 12 C 0.088 3.912 13 H 0.061 0.939 14 C -0.078 4.078 15 C -0.138 4.138 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.049 4.049 20 C -0.147 4.147 21 C 0.040 3.960 22 N -0.305 5.305 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.185 4.185 26 N -0.538 5.538 27 Si 0.718 3.282 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.202 1.202 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.249 0.751 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.109 0.891 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.609 1.437 -6.228 7.340 hybrid contribution 0.815 0.889 0.907 1.509 sum -2.794 2.326 -5.320 6.444 Atomic orbital electron populations 1.20142 0.89703 1.02103 1.01668 1.20521 0.95419 0.90621 1.05548 1.21449 0.82697 0.98848 1.13368 1.41457 1.08027 1.06817 1.58526 0.75018 1.22111 0.99171 0.83503 1.03231 1.20431 0.92396 0.93136 1.16890 1.17323 0.85359 0.84059 0.76166 1.90667 1.17503 1.83971 1.52723 1.45858 1.10331 1.05275 1.73070 1.21236 0.96258 0.80291 1.00535 1.19564 0.92452 0.88016 0.91202 0.93880 1.20191 0.96474 0.96804 0.94301 1.21171 0.98135 0.95869 0.98616 1.20928 1.01083 0.93741 0.99440 1.20923 0.98912 0.99017 0.95969 1.21192 0.99103 0.95774 0.98891 1.19670 0.97107 0.92282 0.95841 1.21179 0.97266 1.00394 0.95824 1.20797 0.89945 0.85518 0.99709 1.43948 1.45475 1.20594 1.20496 1.19183 0.92997 0.99803 1.26013 0.90972 1.25138 0.95216 0.97665 1.00446 1.69999 0.98027 1.43583 1.42207 0.86580 0.76995 0.82151 0.82515 1.20927 1.21819 1.20193 0.92171 0.92928 0.90340 0.81945 0.80741 0.75139 0.91449 0.92690 0.86345 0.86789 0.86968 0.86887 0.92353 0.91201 0.95861 0.89101 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.98 36.01 0.36 -0.81 16 2 C -0.11 -1.87 6.35 -102.54 -0.65 -2.52 16 3 C -0.04 -0.48 11.82 -16.82 -0.20 -0.68 16 4 N -0.55 -6.96 5.90 -12.85 -0.08 -7.04 16 5 H 0.41 3.66 8.96 -40.82 -0.37 3.29 16 6 C 0.06 0.88 11.40 -16.84 -0.19 0.68 16 7 C -0.22 -4.00 6.29 -103.35 -0.65 -4.65 16 8 C 0.58 12.01 7.80 -12.59 -0.10 11.91 16 9 O -0.57 -13.01 15.31 5.25 0.08 -12.93 16 10 N -0.69 -13.70 3.44 -61.44 -0.21 -13.91 16 11 C 0.14 2.76 4.13 -4.04 -0.02 2.74 16 12 C 0.19 3.86 3.05 -68.92 -0.21 3.65 16 13 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.08 -1.39 5.43 -104.55 -0.57 -1.96 16 15 C -0.12 -1.92 9.06 -39.44 -0.36 -2.28 16 16 C -0.13 -1.93 10.05 -39.68 -0.40 -2.33 16 17 C -0.13 -1.86 10.04 -39.69 -0.40 -2.25 16 18 C -0.13 -2.06 9.59 -39.43 -0.38 -2.44 16 19 C -0.05 -0.88 5.76 -104.63 -0.60 -1.49 16 20 C -0.11 -2.01 5.86 -28.04 -0.16 -2.18 16 21 C 0.17 3.63 5.59 -3.74 -0.02 3.61 16 22 N -0.58 -13.13 2.90 -166.30 -0.48 -13.61 16 23 C -0.25 -6.12 6.91 -15.06 -0.10 -6.22 16 24 H 0.07 1.87 5.93 -52.48 -0.31 1.56 16 25 C 0.02 0.38 4.96 -17.43 -0.09 0.30 16 26 N -0.90 -23.16 11.55 55.49 0.64 -22.52 16 27 Si 0.89 20.62 29.58 -169.99 -5.03 15.60 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.32 6.86 -51.93 -0.36 0.96 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.18 2.59 7.45 -52.49 -0.39 2.20 16 36 H 0.41 8.13 6.25 -40.82 -0.26 7.88 16 37 H 0.07 1.48 7.83 -51.93 -0.41 1.08 16 38 H 0.06 0.99 6.66 -51.93 -0.35 0.64 16 39 H 0.12 1.72 6.72 -52.48 -0.35 1.37 16 40 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.11 1.54 8.05 -52.48 -0.42 1.12 16 43 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.21 6.20 -51.93 -0.32 1.89 16 47 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -30.18 376.30 -10.61 -40.79 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.47 Total: 14.86 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.74 Total: -6.91 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.13 Total: -57.08 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.18 -10.61 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948986914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.752 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds