Wall clock time and date at job start Tue Mar 31 2020 23:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34481 * 126.83283 * 2 1 4 4 N 1.36454 * 108.85388 * 180.26584 * 3 2 1 5 5 H 0.97000 * 124.84931 * 179.68557 * 4 3 2 6 6 C 1.34658 * 110.29764 * 359.70755 * 4 3 2 7 7 C 1.36768 * 108.39612 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.93993 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99726 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00362 * 0.03169 * 8 7 6 11 11 C 1.46495 * 119.99983 * 180.27397 * 10 8 7 12 12 C 1.53010 * 109.46809 * 185.60196 * 11 10 8 13 13 H 1.09000 * 109.43311 * 299.70551 * 12 11 10 14 14 C 1.50816 * 109.43527 * 179.79200 * 12 11 10 15 15 C 1.38906 * 117.75687 * 49.06680 * 14 12 11 16 16 C 1.37946 * 120.49532 * 179.53098 * 15 14 12 17 17 C 1.38271 * 119.71557 * 359.94179 * 16 15 14 18 18 C 1.37904 * 119.82682 * 0.21295 * 17 16 15 19 19 C 1.37606 * 122.39868 * 228.86766 * 14 12 11 20 20 C 1.50598 * 122.85347 * 0.79314 * 19 14 12 21 21 C 1.52790 * 110.85879 * 340.25341 * 20 19 14 22 22 N 1.46683 * 109.43546 * 59.62325 * 12 11 10 23 23 C 1.36934 * 121.35290 * 344.38334 * 22 12 11 24 24 H 1.08005 * 119.99930 * 36.43798 * 23 22 12 25 25 C 1.38813 * 119.99988 * 216.43682 * 23 22 12 26 26 N 1.31615 * 120.00448 * 15.25716 * 25 23 22 27 27 Si 1.86804 * 119.99711 * 195.26274 * 25 23 22 28 28 H 1.48498 * 109.47136 * 59.99872 * 27 25 23 29 29 H 1.48498 * 109.47025 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47004 * 299.99622 * 27 25 23 31 31 H 1.09006 * 109.46683 * 270.20574 * 1 2 3 32 32 H 1.09002 * 109.46977 * 30.20235 * 1 2 3 33 33 H 1.08992 * 109.46978 * 150.21031 * 1 2 3 34 34 H 1.07996 * 125.57522 * 359.96896 * 3 2 1 35 35 H 1.07993 * 125.79999 * 179.97438 * 6 4 3 36 36 H 0.97000 * 119.99640 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46962 * 305.59765 * 11 10 8 38 38 H 1.08992 * 109.47607 * 65.60532 * 11 10 8 39 39 H 1.08006 * 119.75963 * 359.48162 * 15 14 12 40 40 H 1.08005 * 120.14565 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.08547 * 180.19413 * 17 16 15 42 42 H 1.08004 * 119.70902 * 179.97438 * 18 17 16 43 43 H 1.09003 * 109.20353 * 219.90101 * 20 19 14 44 44 H 1.09001 * 109.16407 * 100.58644 * 20 19 14 45 45 H 1.09003 * 109.77441 * 287.84561 * 21 20 19 46 46 H 1.08992 * 109.82787 * 167.06376 * 21 20 19 47 47 H 0.96996 * 120.00235 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6552 -0.0060 5 1 4.3841 1.2413 -0.0116 6 6 3.6657 -0.6903 -0.0035 7 6 2.3864 -1.1741 0.0037 8 6 1.9750 -2.5880 0.0081 9 8 0.7937 -2.8776 0.0140 10 7 2.9073 -3.5612 0.0056 11 6 2.4979 -4.9678 0.0039 12 6 3.7341 -5.8589 0.1421 13 1 4.4063 -5.6792 -0.6969 14 6 3.3113 -7.3066 0.1454 15 6 2.4444 -7.7296 -0.8541 16 6 2.0290 -9.0439 -0.9104 17 6 2.4803 -9.9464 0.0348 18 6 3.3384 -9.5266 1.0294 19 6 3.7557 -8.2023 1.0908 20 6 4.6851 -7.8145 2.2105 21 6 5.4193 -6.5153 1.8828 22 7 4.4248 -5.5440 1.3973 23 6 4.1555 -4.3937 2.0896 24 1 3.1471 -4.0085 2.1253 25 6 5.1784 -3.7228 2.7456 26 7 6.4339 -4.0032 2.4673 27 14 4.7731 -2.4220 4.0235 28 1 3.9845 -3.0359 5.1219 29 1 6.0324 -1.8583 4.5727 30 1 3.9802 -1.3371 3.3912 31 1 -0.3633 0.0037 1.0277 32 1 -0.3633 0.8882 -0.5170 33 1 -0.3633 -0.8918 -0.5105 34 1 1.9869 2.1058 -0.0005 35 1 4.5664 -1.2860 -0.0074 36 1 3.8494 -3.3303 0.0006 37 1 1.8229 -5.1507 0.8399 38 1 1.9879 -5.1967 -0.9317 39 1 2.0924 -7.0242 -1.5924 40 1 1.3546 -9.3666 -1.6899 41 1 2.1613 -10.9776 -0.0055 42 1 3.6893 -10.2331 1.7671 43 1 5.4147 -8.6100 2.3626 44 1 4.1070 -7.6789 3.1246 45 1 6.1648 -6.6981 1.1089 46 1 5.9051 -6.1291 2.7788 47 1 7.1487 -3.5341 2.9254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948986914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:55 Heat of formation + Delta-G solvation = 42.574650 kcal Electronic energy + Delta-G solvation = -30048.605455 eV Core-core repulsion = 26196.683859 eV Total energy + Delta-G solvation = -3851.921596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02741 -40.99770 -39.80079 -37.79287 -35.63561 -34.19960 -33.48426 -33.28278 -31.48871 -31.01145 -29.91830 -27.97841 -27.38926 -26.43923 -24.08957 -23.85369 -23.33935 -22.18894 -20.80465 -20.53720 -20.10511 -19.18254 -18.24912 -17.43795 -17.37522 -16.86793 -16.54614 -16.12182 -15.90117 -15.84982 -15.45247 -15.08099 -14.93479 -14.77419 -14.52492 -14.30754 -14.06629 -13.90724 -13.72207 -13.55214 -13.50166 -13.33423 -13.21972 -13.07902 -12.78426 -12.70321 -12.55858 -12.27129 -12.19259 -12.04901 -12.03544 -11.47032 -11.25975 -10.74632 -10.56550 -9.85229 -9.57970 -9.41226 -9.34078 -9.12628 -8.52495 -7.85509 -5.37678 0.56608 0.59219 0.87728 1.41089 1.44286 1.51691 1.54991 2.37734 2.47136 2.60104 2.74401 2.96007 3.29765 3.54331 3.97580 4.02255 4.05626 4.12813 4.19914 4.27487 4.32213 4.34898 4.43849 4.51317 4.53018 4.65101 4.66858 4.79129 4.81687 4.89542 4.95217 4.98296 4.99625 5.15268 5.19484 5.23765 5.26672 5.38349 5.40373 5.64190 5.67634 5.68721 5.72897 5.78551 5.90016 5.95274 6.01091 6.24928 6.45902 6.72092 6.89456 7.15782 7.53568 7.79424 8.42278 9.18254 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004429 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.830325 B = 6319.946744 C = 8114.753310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.153 4.153 3 C -0.008 4.008 4 N -0.536 5.536 5 H 0.435 0.565 6 C 0.058 3.942 7 C -0.260 4.260 8 C 0.576 3.424 9 O -0.601 6.601 10 N -0.693 5.693 11 C 0.152 3.848 12 C 0.200 3.800 13 H 0.038 0.962 14 C -0.101 4.101 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.133 4.133 19 C -0.075 4.075 20 C -0.096 4.096 21 C 0.171 3.829 22 N -0.594 5.594 23 C -0.240 4.240 24 H 0.055 0.945 25 C -0.015 4.015 26 N -0.914 5.914 27 Si 0.934 3.066 28 H -0.297 1.297 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.209 0.791 35 H 0.178 0.822 36 H 0.410 0.590 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.012 0.988 46 H 0.063 0.937 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 1.467 -7.260 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.159 4.159 3 C -0.136 4.136 4 N -0.131 5.131 5 H 0.275 0.725 6 C -0.080 4.080 7 C -0.271 4.271 8 C 0.366 3.634 9 O -0.485 6.485 10 N -0.342 5.342 11 C 0.027 3.973 12 C 0.094 3.906 13 H 0.055 0.945 14 C -0.102 4.102 15 C -0.146 4.146 16 C -0.146 4.146 17 C -0.141 4.141 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.135 4.135 21 C 0.045 3.955 22 N -0.318 5.318 23 C -0.370 4.370 24 H 0.073 0.927 25 C -0.212 4.212 26 N -0.559 5.559 27 Si 0.764 3.236 28 H -0.224 1.224 29 H -0.215 1.215 30 H -0.202 1.202 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.195 0.805 36 H 0.247 0.753 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.081 0.919 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.027 1.466 -7.188 8.369 hybrid contribution 0.914 0.845 1.152 1.696 sum -3.114 2.310 -6.036 7.174 Atomic orbital electron populations 1.20075 0.89320 1.02310 1.01317 1.20843 0.96265 0.90914 1.07882 1.22046 0.81953 0.99935 1.09631 1.41497 1.09044 1.05926 1.56657 0.72524 1.22077 0.98287 0.84961 1.02694 1.20506 0.94348 0.92415 1.19792 1.17805 0.84931 0.85292 0.75363 1.90627 1.18703 1.84683 1.54459 1.45847 1.10148 1.05343 1.72878 1.21125 0.95776 0.80450 0.99944 1.19538 0.91852 0.89609 0.89595 0.94478 1.20115 0.98398 0.95638 0.96099 1.21324 0.97751 0.97264 0.98220 1.21338 1.00551 0.92754 0.99950 1.21361 0.97377 1.00700 0.94648 1.21422 0.99071 0.94799 0.99807 1.19722 0.98105 0.93764 0.95943 1.20975 0.97552 0.99191 0.95795 1.20631 0.89950 0.86932 0.97951 1.44073 1.45719 1.20365 1.21607 1.19055 0.92077 1.00080 1.25780 0.92715 1.25459 0.95159 0.98969 1.01662 1.70079 0.98326 1.44450 1.43021 0.85883 0.76395 0.80725 0.80640 1.22403 1.21539 1.20248 0.92820 0.89529 0.93229 0.77429 0.80541 0.75293 0.94434 0.91134 0.85449 0.83537 0.83378 0.84778 0.90022 0.92460 0.96966 0.91906 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.15 9.98 71.24 0.71 -1.44 16 2 C -0.15 -4.86 6.35 -18.51 -0.12 -4.98 16 3 C -0.01 -0.18 11.82 83.11 0.98 0.81 16 4 N -0.54 -12.11 5.90 -194.57 -1.15 -13.26 16 5 H 0.43 6.24 8.96 -92.71 -0.83 5.41 16 6 C 0.06 1.78 11.40 83.91 0.96 2.74 16 7 C -0.26 -9.69 6.29 -19.04 -0.12 -9.81 16 8 C 0.58 24.87 7.80 86.62 0.68 25.54 16 9 O -0.60 -29.04 15.31 -4.12 -0.06 -29.10 16 10 N -0.69 -28.69 3.44 -466.54 -1.60 -30.29 16 11 C 0.15 6.20 4.13 86.38 0.36 6.56 16 12 C 0.20 8.22 3.05 44.25 0.14 8.36 16 13 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 14 C -0.10 -3.71 5.43 -19.82 -0.11 -3.81 16 15 C -0.13 -3.93 9.06 22.36 0.20 -3.73 16 16 C -0.13 -3.28 10.05 22.21 0.22 -3.05 16 17 C -0.12 -3.04 10.04 22.20 0.22 -2.82 16 18 C -0.13 -3.84 9.59 22.37 0.21 -3.63 16 19 C -0.08 -2.68 5.76 -19.87 -0.11 -2.80 16 20 C -0.10 -3.64 5.86 29.75 0.17 -3.46 16 21 C 0.17 7.75 5.59 86.17 0.48 8.23 16 22 N -0.59 -27.88 2.90 -680.06 -1.97 -29.85 16 23 C -0.24 -12.18 6.91 84.03 0.58 -11.60 16 24 H 0.06 2.98 5.93 -2.91 -0.02 2.96 16 25 C -0.01 -0.75 4.96 84.86 0.42 -0.33 16 26 N -0.91 -48.55 11.55 21.65 0.25 -48.30 16 27 Si 0.93 43.38 29.58 68.60 2.03 45.40 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 30 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 31 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.72 6.86 -2.39 -0.02 1.71 16 34 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.18 5.27 7.45 -2.91 -0.02 5.25 16 36 H 0.41 17.03 6.25 -92.71 -0.58 16.45 16 37 H 0.04 1.75 7.83 -2.39 -0.02 1.73 16 38 H 0.07 2.62 6.66 -2.39 -0.02 2.61 16 39 H 0.13 3.59 6.72 -2.91 -0.02 3.57 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.13 3.24 8.05 -2.91 -0.02 3.21 16 43 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 3.18 6.20 -2.39 -0.01 3.17 16 47 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -68.84 376.30 2.98 -65.86 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.39 Total: 38.75 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.88 Total: 0.78 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.47 Total: -121.70 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.06 Total: -29.10 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.84 2.98 -65.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948986914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.437 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds