Wall clock time and date at job start Tue Mar 31 2020 22:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35455 * 125.56542 * 2 1 4 4 C 1.39840 * 107.86168 * 180.02562 * 3 2 1 5 5 C 1.37871 * 107.08903 * 0.02562 * 4 3 2 6 6 C 1.46671 * 126.23392 * 180.02562 * 5 4 3 7 7 O 1.21697 * 120.00345 * 176.46396 * 6 5 4 8 8 N 1.34783 * 119.99944 * 356.46373 * 6 5 4 9 9 C 1.46501 * 120.00067 * 175.37970 * 8 6 5 10 10 H 1.08999 * 110.88441 * 31.48079 * 9 8 6 11 11 C 1.54354 * 110.82099 * 267.97086 * 9 8 6 12 12 C 1.51359 * 105.16613 * 215.42507 * 11 9 8 13 13 C 1.38497 * 130.38903 * 197.16471 * 12 11 9 14 14 C 1.38099 * 120.22126 * 180.02562 * 13 12 11 15 15 C 1.38261 * 119.93217 * 359.97438 * 14 13 12 16 16 C 1.38101 * 119.93262 * 359.97438 * 15 14 13 17 17 C 1.38216 * 109.76406 * 17.19524 * 12 11 9 18 18 C 1.51367 * 109.75861 * 359.97438 * 17 12 11 19 19 H 1.09004 * 110.30340 * 101.83769 * 18 17 12 20 20 N 1.46497 * 110.30353 * 223.89548 * 18 17 12 21 21 C 1.36935 * 119.99898 * 273.54274 * 20 18 17 22 22 H 1.07996 * 120.00206 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99768 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99573 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00092 * 359.72850 * 23 21 20 26 26 H 1.48508 * 109.47046 * 270.27467 * 25 23 21 27 27 H 1.48497 * 109.47268 * 30.27170 * 25 23 21 28 28 H 1.48499 * 109.47215 * 150.27450 * 25 23 21 29 29 N 1.35541 * 125.56303 * 180.34589 * 2 1 3 30 30 C 1.46498 * 125.67705 * 0.02562 * 29 2 1 31 31 H 1.09003 * 109.46646 * 89.98019 * 1 2 3 32 32 H 1.08998 * 109.47448 * 209.97649 * 1 2 3 33 33 H 1.08999 * 109.47414 * 329.98295 * 1 2 3 34 34 H 1.07999 * 126.06724 * 359.97438 * 3 2 1 35 35 H 1.08001 * 126.45238 * 179.97438 * 4 3 2 36 36 H 0.96998 * 119.99835 * 355.37735 * 8 6 5 37 37 H 1.09002 * 110.30265 * 96.50166 * 11 9 8 38 38 H 1.09003 * 110.38401 * 334.39494 * 11 9 8 39 39 H 1.08007 * 119.89009 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.03718 * 179.97438 * 14 13 12 41 41 H 1.07999 * 120.03117 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.89173 * 180.02562 * 16 15 14 43 43 H 0.97001 * 120.00311 * 93.54678 * 20 18 17 44 44 H 0.96994 * 119.99504 * 179.73017 * 24 23 21 45 45 H 1.09004 * 109.46665 * 266.57178 * 30 29 2 46 46 H 1.09000 * 109.47544 * 26.57405 * 30 29 2 47 47 H 1.08994 * 109.47058 * 146.57818 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6766 -0.0006 5 6 3.6122 -0.7020 -0.0015 6 6 4.7859 -1.5816 -0.0019 7 8 4.6420 -2.7883 0.0623 8 7 6.0239 -1.0534 -0.0732 9 6 7.1984 -1.9232 0.0283 10 1 6.9881 -2.9097 -0.3847 11 6 7.6759 -2.0316 1.4921 12 6 9.1850 -2.1144 1.4112 13 6 10.1125 -2.5323 2.3511 14 6 11.4603 -2.5209 2.0503 15 6 11.8861 -2.0917 0.8070 16 6 10.9627 -1.6756 -0.1319 17 6 9.6107 -1.6847 0.1685 18 6 8.4167 -1.2842 -0.6712 19 1 8.3159 -0.1990 -0.6921 20 7 8.5541 -1.8076 -2.0326 21 6 9.2429 -1.0917 -2.9750 22 1 9.6852 -0.1415 -2.7146 23 6 9.3726 -1.5874 -4.2652 24 7 10.0351 -0.8996 -5.1709 25 14 8.6140 -3.2345 -4.7135 26 1 9.5970 -4.3181 -4.4584 27 1 7.4011 -3.4621 -3.8877 28 1 8.2410 -3.2328 -6.1509 29 7 2.2953 -1.1026 -0.0067 30 6 1.8241 -2.4897 -0.0156 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5141 34 1 1.9545 2.1268 -0.0004 35 1 4.5025 1.3090 -0.0011 36 1 6.1371 -0.0974 -0.1919 37 1 7.2720 -2.9315 1.9560 38 1 7.3751 -1.1486 2.0560 39 1 9.7806 -2.8681 3.3225 40 1 12.1810 -2.8470 2.7856 41 1 12.9398 -2.0825 0.5699 42 1 11.2961 -1.3409 -1.1031 43 1 8.1571 -2.6612 -2.2664 44 1 10.1291 -1.2478 -6.0713 45 1 1.7651 -2.8599 1.0080 46 1 0.8372 -2.5353 -0.4759 47 1 2.5196 -3.1060 -0.5852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960244431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:57 Heat of formation + Delta-G solvation = 35.858123 kcal Electronic energy + Delta-G solvation = -29030.861946 eV Core-core repulsion = 25178.649099 eV Total energy + Delta-G solvation = -3852.212846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.45334 -41.38166 -39.90428 -37.57833 -35.89188 -34.52033 -33.56608 -33.19278 -32.52165 -31.50791 -29.43954 -27.88196 -27.44207 -27.30618 -24.66400 -23.77865 -22.76409 -21.96876 -21.74843 -21.13971 -20.18652 -19.71189 -18.69770 -17.58690 -17.25400 -16.79948 -16.59194 -16.41156 -16.06426 -15.88762 -15.46343 -15.36491 -15.01096 -14.80577 -14.42876 -14.25931 -14.13900 -14.00177 -13.96869 -13.93499 -13.74083 -13.56400 -13.46492 -12.99629 -12.95630 -12.87458 -12.67999 -12.61887 -12.33899 -12.24888 -12.03890 -11.82747 -11.63957 -11.18701 -11.04527 -10.25278 -9.70310 -9.63299 -9.44377 -9.36525 -9.00882 -8.05549 -5.38374 0.43199 0.50856 0.58358 1.32741 1.33575 1.39468 1.60213 1.74777 2.32495 2.34866 2.42834 2.91170 3.24958 3.35926 3.49139 3.73029 3.91554 3.92885 3.94280 4.04591 4.08781 4.27525 4.27696 4.31942 4.32629 4.33862 4.52314 4.63052 4.64068 4.72813 4.74606 4.80529 4.82175 4.90225 4.93508 5.09820 5.17104 5.17989 5.24692 5.29520 5.39924 5.62636 5.69747 5.72014 5.86282 5.89659 6.00754 6.17135 6.20889 6.30765 6.47405 7.01090 7.11368 7.75624 7.94060 9.15422 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.003696 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.586983 B = 7573.178264 C = 9458.189152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.045 3.955 3 C -0.221 4.221 4 C -0.133 4.133 5 C -0.090 4.090 6 C 0.588 3.412 7 O -0.586 6.586 8 N -0.694 5.694 9 C 0.150 3.850 10 H 0.080 0.920 11 C -0.074 4.074 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.106 4.106 17 C -0.120 4.120 18 C 0.210 3.790 19 H 0.074 0.926 20 N -0.741 5.741 21 C -0.217 4.217 22 H 0.066 0.934 23 C -0.050 4.050 24 N -0.976 5.976 25 Si 0.939 3.061 26 H -0.281 1.281 27 H -0.266 1.266 28 H -0.295 1.295 29 N -0.418 5.418 30 C 0.067 3.933 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.414 0.586 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.362 0.638 44 H 0.257 0.743 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 0.853 18.701 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.244 4.244 4 C -0.159 4.159 5 C -0.202 4.202 6 C 0.378 3.622 7 O -0.468 6.468 8 N -0.344 5.344 9 C 0.044 3.956 10 H 0.098 0.902 11 C -0.112 4.112 12 C -0.105 4.105 13 C -0.129 4.129 14 C -0.136 4.136 15 C -0.150 4.150 16 C -0.125 4.125 17 C -0.123 4.123 18 C 0.101 3.899 19 H 0.092 0.908 20 N -0.383 5.383 21 C -0.348 4.348 22 H 0.084 0.916 23 C -0.243 4.243 24 N -0.627 5.627 25 Si 0.768 3.232 26 H -0.208 1.208 27 H -0.192 1.192 28 H -0.221 1.221 29 N -0.092 5.092 30 C -0.073 4.073 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.164 0.836 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.114 0.886 43 H 0.195 0.805 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.725 -0.207 18.622 24.374 hybrid contribution 0.314 -0.570 -1.350 1.499 sum -15.411 -0.777 17.272 23.161 Atomic orbital electron populations 1.20535 0.84928 1.04912 1.03961 1.21283 0.95525 0.85210 1.05232 1.20985 0.91957 0.99060 1.12425 1.21689 0.99315 0.91464 1.03471 1.19912 0.84479 0.94024 1.21785 1.17260 0.82924 0.86654 0.75317 1.90742 1.86801 1.16059 1.53232 1.45412 1.03880 1.11766 1.73362 1.21655 0.83841 0.94211 0.95915 0.90198 1.21271 0.90520 1.04051 0.95375 1.20588 0.95691 0.99933 0.94280 1.20877 0.92403 1.00180 0.99480 1.21333 0.96005 0.99600 0.96680 1.21301 0.99708 0.99872 0.94091 1.20771 0.92876 0.99720 0.99096 1.21337 0.95069 0.99964 0.95949 1.20077 0.89747 0.97455 0.82608 0.90839 1.42775 1.65139 1.23052 1.07299 1.18936 1.24435 1.01581 0.89832 0.91577 1.25244 1.01496 1.01286 0.96231 1.69837 1.48212 1.40593 1.04058 0.85650 0.78926 0.81619 0.76986 1.20763 1.19175 1.22126 1.43980 1.04375 1.07561 1.53275 1.22253 1.02018 0.78785 1.04266 0.89719 0.90474 0.88000 0.81802 0.82383 0.74878 0.89729 0.87944 0.83625 0.82895 0.84746 0.88620 0.80519 0.93379 0.90008 0.87055 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.81 71.24 0.70 -0.18 16 2 C 0.05 0.87 6.87 41.34 0.28 1.15 16 3 C -0.22 -4.40 10.71 22.01 0.24 -4.17 16 4 C -0.13 -3.10 10.35 22.57 0.23 -2.86 16 5 C -0.09 -2.50 6.89 40.35 0.28 -2.22 16 6 C 0.59 18.86 7.78 86.44 0.67 19.53 16 7 O -0.59 -21.89 14.42 -4.34 -0.06 -21.95 16 8 N -0.69 -20.53 5.12 -442.16 -2.26 -22.79 16 9 C 0.15 4.91 3.15 45.90 0.14 5.05 16 10 H 0.08 3.04 7.15 -2.39 -0.02 3.02 16 11 C -0.07 -1.98 6.49 30.52 0.20 -1.79 16 12 C -0.10 -3.09 6.14 -19.60 -0.12 -3.21 16 13 C -0.11 -2.78 10.04 22.30 0.22 -2.56 16 14 C -0.12 -2.90 10.05 22.24 0.22 -2.68 16 15 C -0.13 -3.95 10.05 22.24 0.22 -3.73 16 16 C -0.11 -4.02 9.88 22.30 0.22 -3.80 16 17 C -0.12 -4.38 5.79 -19.59 -0.11 -4.49 16 18 C 0.21 8.01 3.22 44.91 0.14 8.15 16 19 H 0.07 2.80 7.77 -2.39 -0.02 2.78 16 20 N -0.74 -34.98 4.96 -323.33 -1.60 -36.59 16 21 C -0.22 -12.13 9.85 84.04 0.83 -11.30 16 22 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 23 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 24 N -0.98 -62.23 13.97 21.65 0.30 -61.93 16 25 Si 0.94 47.35 27.73 68.60 1.90 49.26 16 26 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.80 6.52 99.48 0.65 -12.15 16 28 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 29 N -0.42 -9.99 3.16 -519.72 -1.64 -11.63 16 30 C 0.07 1.34 10.09 127.77 1.29 2.63 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.62 7.58 -2.39 -0.02 0.60 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.16 3.04 7.47 -2.91 -0.02 3.02 16 36 H 0.41 10.55 7.35 -92.71 -0.68 9.87 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.10 2.36 8.08 -2.39 -0.02 2.34 16 39 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 42 H 0.10 4.24 7.57 -2.91 -0.02 4.22 16 43 H 0.36 17.37 5.45 -92.71 -0.50 16.87 16 44 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.11 1.43 7.43 -2.39 -0.02 1.41 16 47 H 0.07 1.90 6.62 -2.39 -0.02 1.88 16 Total: -1.00 -75.79 386.38 2.52 -73.27 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.24 Total: 41.34 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 6.13 Total: -8.98 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -5.21 Total: -132.93 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.90 Total: 49.26 kcal Total: -75.79 2.52 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960244431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.124 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds