Wall clock time and date at job start Tue Mar 31 2020 22:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36765 * 125.80380 * 2 1 4 4 C 1.47259 * 126.94277 * 359.97438 * 3 2 1 5 5 O 1.21631 * 120.00252 * 359.71265 * 4 3 2 6 6 N 1.34780 * 120.00164 * 179.71164 * 4 3 2 7 7 C 1.46505 * 120.00117 * 180.02562 * 6 4 3 8 8 H 1.08999 * 110.72791 * 31.59609 * 7 6 4 9 9 C 1.54342 * 110.82261 * 267.96982 * 7 6 4 10 10 C 1.51366 * 105.17045 * 268.12373 * 9 7 6 11 11 C 1.38498 * 130.39332 * 162.80945 * 10 9 7 12 12 C 1.38101 * 120.21571 * 179.97438 * 11 10 9 13 13 C 1.38255 * 119.93656 * 0.02562 * 12 11 10 14 14 C 1.38095 * 119.93172 * 0.02562 * 13 12 11 15 15 C 1.38215 * 109.75993 * 342.81152 * 10 9 7 16 16 C 1.51375 * 109.75775 * 359.97438 * 15 10 9 17 17 H 1.08996 * 110.38323 * 136.15729 * 16 15 10 18 18 N 1.46498 * 110.30292 * 258.26587 * 16 15 10 19 19 C 1.36935 * 120.00239 * 270.74483 * 18 16 15 20 20 H 1.07998 * 119.99613 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00008 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00103 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00201 * 359.72443 * 21 19 18 24 24 H 1.48501 * 109.47085 * 270.27640 * 23 21 19 25 25 H 1.48497 * 109.46789 * 30.27649 * 23 21 19 26 26 H 1.48490 * 109.47245 * 150.27799 * 23 21 19 27 27 C 1.46693 * 106.11612 * 179.71677 * 3 2 1 28 28 C 1.34488 * 106.33110 * 0.25962 * 27 3 2 29 29 N 1.34661 * 125.79992 * 180.16028 * 2 1 3 30 30 C 1.46499 * 124.84990 * 0.05828 * 29 2 1 31 31 H 1.09000 * 109.46835 * 90.00004 * 1 2 3 32 32 H 1.08990 * 109.47309 * 210.00458 * 1 2 3 33 33 H 1.09000 * 109.46836 * 330.00368 * 1 2 3 34 34 H 0.97004 * 120.00091 * 359.97438 * 6 4 3 35 35 H 1.09000 * 110.30310 * 27.04497 * 9 7 6 36 36 H 1.08998 * 110.30587 * 149.09956 * 9 7 6 37 37 H 1.08004 * 119.88988 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.03166 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.03219 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.89315 * 179.97438 * 14 13 12 41 41 H 0.97004 * 119.99747 * 90.75223 * 18 16 15 42 42 H 0.96999 * 120.00174 * 179.72503 * 22 21 19 43 43 H 1.08001 * 126.83431 * 180.29688 * 27 3 2 44 44 H 1.07995 * 125.56783 * 179.97438 * 28 27 3 45 45 H 1.09000 * 109.46906 * 270.30722 * 30 29 2 46 46 H 1.09001 * 109.47450 * 30.30753 * 30 29 2 47 47 H 1.09000 * 109.47251 * 150.30577 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5155 -0.0005 5 8 0.6840 2.7839 -0.0063 6 7 2.7851 3.5053 0.0054 7 6 2.3506 4.9045 0.0055 8 1 1.4043 5.0145 0.5352 9 6 2.2436 5.4458 -1.4360 10 6 3.5955 6.0599 -1.7298 11 6 4.1812 6.4057 -2.9363 12 6 5.4449 6.9619 -2.9613 13 6 6.1288 7.1743 -1.7786 14 6 5.5469 6.8293 -0.5747 15 6 4.2792 6.2722 -0.5475 16 6 3.4332 5.8158 0.6219 17 1 4.0395 5.2546 1.3329 18 7 2.8139 6.9679 1.2815 19 6 3.4709 7.6107 2.2966 20 1 4.4459 7.2684 2.6105 21 6 2.8837 8.7020 2.9219 22 7 3.5155 9.3201 3.8972 23 14 1.2006 9.2987 2.3736 24 1 1.3601 10.3088 1.2968 25 1 0.4109 8.1500 1.8617 26 1 0.4930 9.9115 3.5263 27 6 3.6883 0.6150 0.0070 28 6 3.6095 -0.7276 0.0047 29 7 2.2947 -1.0922 -0.0031 30 6 1.8093 -2.4744 -0.0081 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8898 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.7313 3.2913 0.0104 35 1 2.0388 4.6318 -2.1314 36 1 1.4612 6.2021 -1.4989 37 1 3.6474 6.2404 -3.8605 38 1 5.8990 7.2300 -3.9038 39 1 7.1174 7.6088 -1.7964 40 1 6.0819 6.9950 0.3488 41 1 1.9382 7.2754 0.9993 42 1 3.1069 10.0852 4.3315 43 1 4.5891 1.2108 0.0133 44 1 4.4497 -1.4061 0.0080 45 1 1.6829 -2.8188 1.0183 46 1 0.8522 -2.5215 -0.5277 47 1 2.5316 -3.1113 -0.5188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960303962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:01 Heat of formation + Delta-G solvation = 36.925269 kcal Electronic energy + Delta-G solvation = -28998.300828 eV Core-core repulsion = 25146.134257 eV Total energy + Delta-G solvation = -3852.166572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.28749 -41.42727 -39.79549 -37.55953 -35.77778 -34.21196 -33.44300 -32.96217 -32.49692 -31.60970 -29.41940 -27.90287 -27.38955 -27.16808 -24.85786 -23.75039 -22.88990 -21.81191 -21.64136 -20.94378 -20.14891 -19.60774 -18.37204 -17.51660 -17.06262 -16.71466 -16.59163 -16.40474 -16.08872 -15.76851 -15.60606 -15.47689 -15.09470 -14.72523 -14.51995 -14.29354 -14.05524 -13.99980 -13.98821 -13.89277 -13.60125 -13.54615 -13.13760 -13.04358 -12.87418 -12.78646 -12.60123 -12.45140 -12.35583 -12.24104 -12.01294 -11.80081 -11.67604 -11.06683 -10.87143 -10.15855 -9.65202 -9.49999 -9.48273 -9.32429 -9.08415 -8.05114 -5.39656 0.53427 0.58209 0.76156 1.36251 1.37636 1.44383 1.53678 1.88490 2.37456 2.45238 2.58709 2.91780 3.25606 3.39562 3.68328 3.79971 3.86305 3.98827 4.02927 4.05127 4.15726 4.23426 4.26671 4.31222 4.42021 4.46349 4.47459 4.67228 4.68144 4.74029 4.74738 4.75632 4.82636 4.89403 4.96514 4.99716 5.08541 5.19726 5.29401 5.30442 5.54369 5.64517 5.69797 5.71991 5.81760 5.88690 6.11973 6.17313 6.21618 6.39123 6.68933 7.01008 7.36828 7.74389 7.94009 9.15715 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.003380 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.498835 B = 8281.838577 C = 9676.958711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.095 3.905 3 C -0.271 4.271 4 C 0.588 3.412 5 O -0.588 6.588 6 N -0.701 5.701 7 C 0.146 3.854 8 H 0.084 0.916 9 C -0.080 4.080 10 C -0.100 4.100 11 C -0.115 4.115 12 C -0.119 4.119 13 C -0.128 4.128 14 C -0.109 4.109 15 C -0.117 4.117 16 C 0.211 3.789 17 H 0.059 0.941 18 N -0.735 5.735 19 C -0.225 4.225 20 H 0.062 0.938 21 C -0.055 4.055 22 N -0.978 5.978 23 Si 0.944 3.056 24 H -0.279 1.279 25 H -0.256 1.256 26 H -0.293 1.293 27 C -0.185 4.185 28 C -0.008 4.008 29 N -0.442 5.442 30 C 0.059 3.941 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.408 0.592 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.154 0.846 44 H 0.203 0.797 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -24.937 -15.812 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C -0.281 4.281 4 C 0.379 3.621 5 O -0.470 6.470 6 N -0.351 5.351 7 C 0.039 3.961 8 H 0.102 0.898 9 C -0.118 4.118 10 C -0.101 4.101 11 C -0.133 4.133 12 C -0.137 4.137 13 C -0.146 4.146 14 C -0.128 4.128 15 C -0.120 4.120 16 C 0.102 3.898 17 H 0.077 0.923 18 N -0.376 5.376 19 C -0.356 4.356 20 H 0.080 0.920 21 C -0.247 4.247 22 N -0.628 5.628 23 Si 0.772 3.228 24 H -0.205 1.205 25 H -0.181 1.181 26 H -0.219 1.219 27 C -0.209 4.209 28 C -0.134 4.134 29 N -0.118 5.118 30 C -0.081 4.081 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.244 0.756 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.119 0.881 41 H 0.199 0.801 42 H 0.067 0.933 43 H 0.172 0.828 44 H 0.220 0.780 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.444 -25.068 -15.619 29.539 hybrid contribution -0.279 1.148 0.499 1.282 sum -0.723 -23.920 -15.120 28.307 Atomic orbital electron populations 1.20501 0.86540 1.04032 1.03587 1.20503 0.94414 0.85736 1.01729 1.20150 0.95145 0.90980 1.21785 1.17767 0.84825 0.85065 0.74433 1.90692 1.17963 1.85067 1.53303 1.45485 1.10206 1.04318 1.75125 1.21528 0.97693 0.80765 0.96075 0.89787 1.21351 0.94408 1.00021 0.96050 1.20622 0.95994 0.99754 0.93682 1.20854 0.95901 0.99733 0.96798 1.21313 0.94558 0.99048 0.98773 1.21283 1.00938 1.00384 0.91963 1.20745 0.94903 0.98749 0.98378 1.21358 0.94555 0.99557 0.96484 1.19882 0.91567 0.87356 0.91042 0.92307 1.42552 1.19872 1.34844 1.40360 1.18943 1.00602 1.08186 1.07825 0.91962 1.25356 1.02044 0.98699 0.98561 1.69854 1.40441 1.24330 1.28197 0.85569 0.81096 0.78809 0.77373 1.20545 1.18068 1.21947 1.22251 0.95130 0.94816 1.08684 1.22236 0.86218 0.96087 1.08905 1.43843 1.05843 1.07046 1.55064 1.22438 1.02938 0.77897 1.04844 0.90012 0.89251 0.90871 0.75573 0.89638 0.89740 0.84283 0.83002 0.84227 0.88112 0.80077 0.93269 0.82835 0.78012 0.89530 0.88637 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.26 71.24 0.66 -1.10 16 2 C 0.09 2.13 6.89 41.78 0.29 2.42 16 3 C -0.27 -7.33 6.29 -19.04 -0.12 -7.45 16 4 C 0.59 19.38 7.81 86.61 0.68 20.05 16 5 O -0.59 -22.75 14.46 -4.13 -0.06 -22.81 16 6 N -0.70 -21.80 5.11 -441.59 -2.26 -24.05 16 7 C 0.15 5.17 3.03 45.91 0.14 5.31 16 8 H 0.08 3.38 7.47 -2.39 -0.02 3.36 16 9 C -0.08 -2.52 6.48 30.52 0.20 -2.33 16 10 C -0.10 -3.20 6.14 -19.60 -0.12 -3.32 16 11 C -0.12 -3.09 10.04 22.30 0.22 -2.86 16 12 C -0.12 -2.97 10.05 22.24 0.22 -2.75 16 13 C -0.13 -3.68 10.05 22.24 0.22 -3.46 16 14 C -0.11 -3.92 10.04 22.30 0.22 -3.69 16 15 C -0.12 -4.31 5.77 -19.59 -0.11 -4.42 16 16 C 0.21 8.49 3.13 44.92 0.14 8.63 16 17 H 0.06 2.47 8.03 -2.39 -0.02 2.45 16 18 N -0.73 -35.73 4.93 -323.29 -1.60 -37.32 16 19 C -0.22 -13.00 10.44 84.03 0.88 -12.12 16 20 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 21 C -0.05 -3.29 5.50 84.86 0.47 -2.82 16 22 N -0.98 -63.36 13.97 21.65 0.30 -63.06 16 23 Si 0.94 47.14 27.73 68.60 1.90 49.04 16 24 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.26 -11.84 6.52 99.48 0.65 -11.19 16 26 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 27 C -0.19 -3.89 10.56 23.62 0.25 -3.64 16 28 C -0.01 -0.13 11.34 83.12 0.94 0.82 16 29 N -0.44 -6.87 3.09 -533.20 -1.65 -8.52 16 30 C 0.06 0.34 10.60 127.77 1.35 1.69 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.17 7.59 -2.39 -0.02 1.15 16 33 H 0.07 1.92 6.47 -2.39 -0.02 1.91 16 34 H 0.41 11.10 7.78 -92.71 -0.72 10.38 16 35 H 0.09 2.49 8.09 -2.39 -0.02 2.47 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 40 H 0.10 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.37 17.47 5.69 -92.71 -0.53 16.94 16 42 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 43 H 0.15 2.77 7.70 -2.91 -0.02 2.74 16 44 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.09 0.38 7.51 -2.39 -0.02 0.36 16 47 H 0.11 0.14 8.13 -2.39 -0.02 0.12 16 Total: -1.00 -79.23 388.99 2.88 -76.35 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.31 Total: 41.42 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 6.53 Total: -11.04 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.19 Total: -132.95 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.90 Total: 49.04 kcal Total: -79.23 2.88 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960303962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.275 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds