Wall clock time and date at job start Tue Mar 31 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34483 * 125.57248 * 2 1 4 4 C 1.46687 * 106.33325 * 180.14387 * 3 2 1 5 5 C 1.47261 * 126.94639 * 179.82674 * 4 3 2 6 6 O 1.21624 * 120.00436 * 179.68728 * 5 4 3 7 7 N 1.34783 * 119.99486 * 359.69021 * 5 4 3 8 8 C 1.46498 * 119.99616 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.89049 * 31.48039 * 8 7 5 10 10 C 1.54350 * 110.82140 * 267.96661 * 8 7 5 11 11 C 1.51371 * 105.17264 * 215.42989 * 10 8 7 12 12 C 1.38492 * 130.38770 * 197.18712 * 11 10 8 13 13 C 1.38106 * 120.21369 * 179.97438 * 12 11 10 14 14 C 1.38256 * 119.93405 * 0.02562 * 13 12 11 15 15 C 1.38105 * 119.93177 * 0.02562 * 14 13 12 16 16 C 1.38215 * 109.75777 * 17.18804 * 11 10 8 17 17 C 1.51371 * 109.76009 * 0.02562 * 16 11 10 18 18 H 1.08993 * 110.30537 * 101.83019 * 17 16 11 19 19 N 1.46498 * 110.30053 * 223.88773 * 17 16 11 20 20 C 1.36936 * 119.99972 * 273.54151 * 19 17 16 21 21 H 1.08002 * 119.99631 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00202 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00201 * 179.72570 * 22 20 19 25 25 H 1.48494 * 109.47228 * 180.27680 * 24 22 20 26 26 H 1.48500 * 109.47000 * 300.27564 * 24 22 20 27 27 H 1.48493 * 109.46907 * 60.27455 * 24 22 20 28 28 C 1.36772 * 106.11265 * 359.57073 * 4 3 2 29 29 C 1.50704 * 125.79853 * 180.23754 * 28 4 3 30 30 N 1.34653 * 108.39753 * 0.26045 * 28 4 3 31 31 H 0.97003 * 124.84995 * 180.02562 * 30 28 4 32 32 H 1.08995 * 109.46730 * 270.36208 * 1 2 3 33 33 H 1.08995 * 109.46737 * 30.36405 * 1 2 3 34 34 H 1.09001 * 109.47168 * 150.36541 * 1 2 3 35 35 H 1.07999 * 126.83455 * 359.97438 * 3 2 1 36 36 H 0.96996 * 120.00463 * 359.97438 * 7 5 4 37 37 H 1.09003 * 110.30003 * 96.50348 * 10 8 7 38 38 H 1.09004 * 110.38577 * 334.40210 * 10 8 7 39 39 H 1.07999 * 119.89909 * 359.97438 * 12 11 10 40 40 H 1.07996 * 120.03465 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.03582 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.88980 * 180.02562 * 15 14 13 43 43 H 0.97001 * 120.00384 * 93.54967 * 19 17 16 44 44 H 0.97005 * 119.99717 * 359.71965 * 23 22 20 45 45 H 1.09008 * 109.46753 * 90.00126 * 29 28 4 46 46 H 1.08997 * 109.47265 * 209.99668 * 29 28 4 47 47 H 1.08994 * 109.47170 * 330.00092 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 -0.0035 5 6 4.8978 1.4300 -0.0084 6 8 5.9893 0.8934 -0.0052 7 7 4.8080 2.7748 -0.0163 8 6 6.0252 3.5901 -0.0217 9 1 6.8311 3.0818 -0.5509 10 6 6.4532 3.9465 1.4178 11 6 7.0246 5.3453 1.3264 12 6 7.8326 6.0439 2.2079 13 6 8.2376 7.3300 1.9092 14 6 7.8353 7.9230 0.7268 15 6 7.0287 7.2281 -0.1529 16 6 6.6223 5.9380 0.1444 17 6 5.7526 4.9784 -0.6392 18 1 4.7013 5.2441 -0.5284 19 7 6.1321 4.9880 -2.0542 20 6 5.5843 5.9119 -2.9037 21 1 4.8729 6.6336 -2.5304 22 6 5.9435 5.9207 -4.2444 23 7 6.8102 5.0408 -4.6994 24 14 5.1905 7.1761 -5.4049 25 1 5.7301 6.9715 -6.7731 26 1 3.7150 7.0093 -5.4246 27 1 5.5278 8.5452 -4.9393 28 6 3.5998 -0.7552 0.0045 29 6 4.7722 -1.7020 0.0096 30 7 2.3008 -1.1098 0.0065 31 1 1.9757 -2.0238 0.0122 32 1 -0.3632 0.0065 1.0276 33 1 -0.3632 0.8867 -0.5195 34 1 -0.3633 -0.8932 -0.5081 35 1 1.9629 2.1233 -0.0004 36 1 3.9376 3.2028 -0.0192 37 1 7.2137 3.2495 1.7697 38 1 5.5910 3.9329 2.0847 39 1 8.1469 5.5816 3.1319 40 1 8.8680 7.8720 2.5985 41 1 8.1514 8.9285 0.4914 42 1 6.7151 7.6918 -1.0766 43 1 6.7713 4.3400 -2.3894 44 1 7.2010 4.3887 -4.0969 45 1 5.0552 -1.9243 1.0385 46 1 4.4955 -2.6257 -0.4987 47 1 5.6138 -1.2409 -0.5072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960311400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:16 Heat of formation + Delta-G solvation = 40.240091 kcal Electronic energy + Delta-G solvation = -28921.361790 eV Core-core repulsion = 25069.338960 eV Total energy + Delta-G solvation = -3852.022830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38650 -39.97428 -38.53674 -36.06210 -34.16071 -32.90579 -32.61174 -31.13136 -30.99938 -29.51772 -29.29186 -27.70440 -25.76987 -24.95466 -23.15833 -22.77584 -21.38138 -20.55719 -20.40341 -20.17967 -19.26125 -17.37391 -17.06367 -16.19558 -15.96845 -15.47129 -15.29523 -14.92978 -14.56607 -14.21696 -14.00004 -13.89369 -13.76433 -13.62223 -13.33853 -13.25373 -13.04664 -12.84373 -12.67547 -12.57192 -12.45245 -12.36805 -12.23742 -12.02910 -11.53745 -11.49559 -11.04739 -10.73474 -10.66523 -10.60451 -10.27681 -9.98629 -9.57519 -9.23676 -9.00445 -8.91023 -8.62340 -8.29710 -8.06956 -8.05849 -7.07829 -6.09839 -3.10787 1.79722 1.82727 1.91283 2.30523 2.96919 3.51129 3.54300 3.61913 3.72136 3.77507 4.24617 4.64327 4.66824 4.77968 4.82272 4.96514 5.10681 5.15861 5.22060 5.28972 5.37946 5.43849 5.47044 5.49715 5.56048 5.58711 5.61361 5.63231 5.75934 5.77941 5.83988 5.93832 5.96604 6.12886 6.18839 6.22068 6.27204 6.45565 6.51085 6.65519 6.72437 6.83753 6.88662 6.97036 7.05012 7.26681 7.34359 7.51355 7.78555 7.92614 8.64346 8.74754 9.18996 10.05964 10.20390 11.37727 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008486 B = 0.003703 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.914902 B = 7560.618471 C = 9621.938267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 C -0.162 4.162 4 C -0.227 4.227 5 C 0.593 3.407 6 O -0.554 6.554 7 N -0.707 5.707 8 C 0.143 3.857 9 H 0.101 0.899 10 C -0.086 4.086 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.080 4.080 16 C -0.092 4.092 17 C 0.213 3.787 18 H 0.067 0.933 19 N -0.722 5.722 20 C -0.333 4.333 21 H 0.065 0.935 22 C -0.040 4.040 23 N -0.939 5.939 24 Si 1.077 2.923 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.104 3.896 29 C -0.094 4.094 30 N -0.551 5.551 31 H 0.412 0.588 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.145 0.855 36 H 0.400 0.600 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.370 0.630 44 H 0.257 0.743 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 -8.941 14.734 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.186 4.186 4 C -0.237 4.237 5 C 0.382 3.618 6 O -0.433 6.433 7 N -0.356 5.356 8 C 0.037 3.963 9 H 0.119 0.881 10 C -0.125 4.125 11 C -0.106 4.106 12 C -0.134 4.134 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.098 4.098 16 C -0.096 4.096 17 C 0.101 3.899 18 H 0.084 0.916 19 N -0.363 5.363 20 C -0.464 4.464 21 H 0.083 0.917 22 C -0.238 4.238 23 N -0.583 5.583 24 Si 0.908 3.092 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.222 1.222 28 C -0.014 4.014 29 C -0.151 4.151 30 N -0.148 5.148 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.204 0.796 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.084 -8.736 13.146 18.211 hybrid contribution -0.339 -0.715 1.527 1.719 sum -9.423 -9.450 14.673 19.834 Atomic orbital electron populations 1.20316 0.87812 1.03380 1.02565 1.20178 0.93411 0.85994 1.10624 1.21826 0.90920 0.97821 1.08028 1.20137 0.92998 0.92237 1.18347 1.17308 0.87663 0.81665 0.75189 1.90714 1.28652 1.72416 1.51564 1.45614 1.09266 1.05635 1.75069 1.21832 0.87803 0.91715 0.94922 0.88065 1.21356 1.00496 0.93093 0.97570 1.20469 0.98495 0.96141 0.95546 1.20460 0.99133 0.94771 0.99072 1.20875 1.01269 0.95260 0.97563 1.21051 0.99189 0.99801 0.94766 1.20814 0.96288 0.93773 0.98946 1.21653 0.98537 0.94778 0.94623 1.19887 0.96085 0.88984 0.84921 0.91559 1.42409 1.52329 1.39207 1.02344 1.19972 1.23027 1.11160 0.92234 0.91685 1.25730 0.99661 1.02821 0.95590 1.70863 1.30529 1.19479 1.37435 0.83283 0.75020 0.74532 0.76339 1.21071 1.22275 1.22233 1.20283 0.84771 0.94294 1.02016 1.20571 0.94876 0.96371 1.03304 1.41495 1.05341 1.08645 1.59312 0.75153 0.91124 0.89901 0.91880 0.83758 0.76557 0.90780 0.90294 0.87114 0.86759 0.86605 0.85430 0.79583 0.93195 0.90596 0.92042 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.41 36.01 0.37 -0.18 16 2 C 0.01 0.07 7.13 -81.86 -0.58 -0.52 16 3 C -0.16 -2.00 10.45 -37.50 -0.39 -2.40 16 4 C -0.23 -3.35 6.29 -103.35 -0.65 -4.00 16 5 C 0.59 10.23 7.81 -12.59 -0.10 10.13 16 6 O -0.55 -10.93 14.46 5.26 0.08 -10.85 16 7 N -0.71 -11.53 5.14 -53.55 -0.28 -11.81 16 8 C 0.14 2.58 3.12 -66.51 -0.21 2.38 16 9 H 0.10 2.10 7.21 -51.93 -0.37 1.72 16 10 C -0.09 -1.37 6.49 -26.85 -0.17 -1.55 16 11 C -0.11 -1.81 6.14 -104.21 -0.64 -2.45 16 12 C -0.12 -1.79 10.04 -39.54 -0.40 -2.19 16 13 C -0.13 -1.97 10.05 -39.62 -0.40 -2.37 16 14 C -0.13 -2.14 10.05 -39.62 -0.40 -2.54 16 15 C -0.08 -1.55 9.89 -39.54 -0.39 -1.94 16 16 C -0.09 -1.79 5.78 -104.21 -0.60 -2.39 16 17 C 0.21 4.28 3.22 -68.04 -0.22 4.06 16 18 H 0.07 1.33 7.77 -51.93 -0.40 0.92 16 19 N -0.72 -17.83 5.15 -53.53 -0.28 -18.10 16 20 C -0.33 -9.04 9.37 -15.06 -0.14 -9.18 16 21 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 22 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 23 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 24 Si 1.08 25.65 29.92 -169.99 -5.09 20.56 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.10 1.30 7.17 -81.88 -0.59 0.71 16 29 C -0.09 -1.03 9.88 36.01 0.36 -0.67 16 30 N -0.55 -5.28 5.90 -5.42 -0.03 -5.31 16 31 H 0.41 2.52 8.96 -40.82 -0.37 2.16 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.14 1.57 7.70 -52.49 -0.40 1.16 16 36 H 0.40 5.78 7.55 -40.82 -0.31 5.47 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.13 2.69 7.58 -52.48 -0.40 2.29 16 43 H 0.37 9.80 6.41 -40.82 -0.26 9.54 16 44 H 0.26 7.94 6.77 -40.82 -0.28 7.66 16 45 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 1.42 6.47 -51.93 -0.34 1.08 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -34.25 389.72 -10.76 -45.01 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -6.56 Total: 19.19 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -5.24 Total: -16.31 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.18 Total: -63.47 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.25 -10.76 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960311400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.251 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds