Wall clock time and date at job start Tue Mar 31 2020 22:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38940 * 119.69482 * 2 1 4 4 C 1.37662 * 120.65115 * 179.97438 * 3 2 1 5 5 C 1.39231 * 119.81232 * 0.27206 * 4 3 2 6 6 N 1.37478 * 133.18647 * 179.72238 * 5 4 3 7 7 H 0.97001 * 125.60458 * 0.02562 * 6 5 4 8 8 C 1.38138 * 108.78943 * 180.02562 * 6 5 4 9 9 C 1.47059 * 125.43019 * 180.02562 * 8 6 5 10 10 O 1.21643 * 120.00466 * 180.02562 * 9 8 6 11 11 N 1.34776 * 120.00233 * 0.02562 * 9 8 6 12 12 C 1.46492 * 120.00475 * 179.97438 * 11 9 8 13 13 H 1.09007 * 115.51806 * 9.41381 * 12 11 9 14 14 C 1.53003 * 117.44410 * 223.99697 * 12 11 9 15 15 H 1.09000 * 119.53714 * 4.12230 * 14 12 11 16 16 C 1.57742 * 116.08228 * 161.57576 * 14 12 11 17 17 N 1.48144 * 104.61842 * 87.40748 * 16 14 12 18 18 C 1.36936 * 127.83890 * 139.75704 * 17 16 14 19 19 H 1.07997 * 120.00197 * 195.55118 * 18 17 16 20 20 C 1.38809 * 120.00001 * 15.56201 * 18 17 16 21 21 N 1.31623 * 119.99927 * 9.00072 * 20 18 17 22 22 Si 1.86797 * 120.00250 * 189.00807 * 20 18 17 23 23 H 1.48498 * 109.47432 * 94.43961 * 22 20 18 24 24 H 1.48495 * 109.47308 * 214.44309 * 22 20 18 25 25 H 1.48503 * 109.46974 * 334.43795 * 22 20 18 26 26 C 1.48151 * 104.32518 * 319.76502 * 17 16 14 27 27 C 1.53002 * 117.44698 * 154.82920 * 12 11 9 28 28 H 1.09003 * 119.53755 * 355.88362 * 27 12 11 29 29 C 1.35875 * 109.13939 * 359.42816 * 8 6 5 30 30 C 1.40857 * 119.42133 * 359.44034 * 5 4 3 31 31 C 1.36442 * 119.69221 * 179.97438 * 2 1 3 32 32 C 1.50703 * 120.08420 * 0.02715 * 31 2 1 33 33 H 1.09008 * 109.46486 * 90.00487 * 1 2 3 34 34 H 1.09003 * 109.47427 * 210.00058 * 1 2 3 35 35 H 1.09000 * 109.47370 * 330.00325 * 1 2 3 36 36 H 1.08005 * 119.66957 * 0.02562 * 3 2 1 37 37 H 1.08003 * 120.09208 * 180.02562 * 4 3 2 38 38 H 0.97011 * 119.99686 * 359.97438 * 11 9 8 39 39 H 1.09002 * 110.95850 * 328.34354 * 16 14 12 40 40 H 1.08999 * 109.85863 * 205.92103 * 16 14 12 41 41 H 0.97001 * 119.99553 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.40222 * 280.80275 * 26 17 16 43 43 H 1.09000 * 110.50952 * 158.41411 * 26 17 16 44 44 H 1.08004 * 126.13726 * 179.97438 * 29 8 6 45 45 H 1.08993 * 109.47283 * 89.99759 * 32 31 2 46 46 H 1.09000 * 109.46613 * 209.99874 * 32 31 2 47 47 H 1.09004 * 109.47036 * 329.99634 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.2069 0.0000 4 6 3.5718 1.2299 0.0005 5 6 4.2840 0.0336 -0.0047 6 7 5.6267 -0.2620 -0.0104 7 1 6.3478 0.3868 -0.0115 8 6 5.7800 -1.6349 -0.0144 9 6 7.0654 -2.3491 -0.0205 10 8 7.0855 -3.5654 -0.0241 11 7 8.2214 -1.6562 -0.0221 12 6 9.5020 -2.3676 -0.0275 13 1 9.4407 -3.4436 -0.1910 14 6 10.5955 -1.8586 0.9138 15 1 10.3761 -1.0403 1.5996 16 6 11.7661 -2.8684 1.2272 17 7 12.7489 -2.6505 0.1403 18 6 14.1144 -2.6165 0.2369 19 1 14.7027 -2.2055 -0.5701 20 6 14.7424 -3.1104 1.3720 21 7 14.0472 -3.7695 2.2746 22 14 16.5741 -2.8395 1.6186 23 1 16.7879 -1.6252 2.4462 24 1 17.1604 -4.0173 2.3071 25 1 17.2302 -2.6607 0.2985 26 6 11.9192 -2.4776 -1.0748 27 6 10.7136 -1.6344 -0.6066 28 1 10.5822 -0.6490 -1.0536 29 6 4.5538 -2.2201 0.0015 30 6 3.5839 -1.1886 0.0016 31 6 2.1829 -1.1853 0.0005 32 6 1.4243 -2.4874 0.0005 33 1 -0.3632 -0.0001 -1.0278 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3634 0.8900 0.5138 36 1 1.6450 2.1362 0.0004 37 1 4.0976 2.1733 0.0009 38 1 8.2055 -0.6862 -0.0195 39 1 11.4072 -3.8976 1.2144 40 1 12.2101 -2.6320 2.1942 41 1 14.4861 -4.1144 3.0679 42 1 11.5841 -3.4458 -1.4471 43 1 12.4775 -1.9471 -1.8461 44 1 4.3547 -3.2816 0.0024 45 1 1.2418 -2.8016 -1.0271 46 1 2.0103 -3.2492 0.5147 47 1 0.4722 -2.3533 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961453378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:04 Heat of formation + Delta-G solvation = 79.690497 kcal Electronic energy + Delta-G solvation = -27715.815695 eV Core-core repulsion = 23865.503563 eV Total energy + Delta-G solvation = -3850.312132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89026 -39.76637 -38.41178 -37.64977 -34.63355 -33.56303 -32.82881 -31.69784 -30.39134 -30.05797 -27.71448 -27.05497 -26.16120 -25.72194 -23.97536 -21.82675 -21.34659 -20.88394 -20.56046 -20.04945 -19.36832 -18.34438 -17.07300 -16.90287 -16.32066 -15.62990 -15.46495 -15.40209 -14.77812 -14.61853 -14.50427 -13.97775 -13.77509 -13.66804 -13.56446 -13.31985 -13.10564 -13.01906 -12.80422 -12.79453 -12.32975 -12.17775 -11.65964 -11.60333 -11.52245 -11.27384 -11.07352 -11.03221 -10.87093 -10.45170 -10.29693 -10.24802 -10.11737 -9.99277 -9.79191 -9.27873 -8.80314 -8.53009 -8.33792 -7.92910 -6.91952 -5.83515 -3.18562 0.50897 1.29631 1.89632 2.61465 2.90856 3.18217 3.35909 3.41203 3.43623 3.53573 4.24756 4.32105 4.42533 4.49487 4.58395 4.74589 4.79379 4.99547 5.00413 5.05410 5.21176 5.26835 5.30857 5.32295 5.38106 5.41013 5.46513 5.50854 5.57956 5.62599 5.74686 5.80411 5.80923 5.87921 5.96638 6.08251 6.11498 6.25619 6.39291 6.44200 6.46253 6.62901 6.68558 6.80828 6.81101 7.06953 7.29656 7.39498 7.49309 7.67675 8.04251 8.16109 9.06710 9.69239 10.45744 11.30645 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.001805 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.018653 B =15508.287462 C =15836.117961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.136 4.136 5 C 0.112 3.888 6 N -0.578 5.578 7 H 0.417 0.583 8 C 0.021 3.979 9 C 0.584 3.416 10 O -0.517 6.517 11 N -0.695 5.695 12 C 0.092 3.908 13 H 0.136 0.864 14 C -0.181 4.181 15 H 0.105 0.895 16 C 0.188 3.812 17 N -0.592 5.592 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.914 5.914 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.156 3.844 27 C -0.182 4.182 28 H 0.101 0.899 29 C -0.106 4.106 30 C -0.114 4.114 31 C -0.027 4.027 32 C -0.120 4.120 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.393 0.607 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.052 0.948 44 H 0.156 0.844 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.019 10.561 -4.764 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.156 4.156 5 C 0.002 3.998 6 N -0.183 5.183 7 H 0.255 0.745 8 C -0.088 4.088 9 C 0.370 3.630 10 O -0.392 6.392 11 N -0.343 5.343 12 C -0.013 4.013 13 H 0.153 0.847 14 C -0.203 4.203 15 H 0.123 0.877 16 C 0.062 3.938 17 N -0.315 5.315 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.560 5.560 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.029 3.971 27 C -0.203 4.203 28 H 0.119 0.881 29 C -0.133 4.133 30 C -0.118 4.118 31 C -0.028 4.028 32 C -0.177 4.177 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.226 0.774 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.173 0.827 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.575 9.611 -4.625 28.636 hybrid contribution 1.378 1.306 0.181 1.907 sum -25.198 10.917 -4.444 27.818 Atomic orbital electron populations 1.20797 0.91211 1.02664 1.02105 1.19209 0.96000 0.92274 1.04863 1.20722 0.92815 0.97538 0.99108 1.20020 0.93825 0.94807 1.06962 1.18293 0.82871 0.95522 1.03124 1.41932 1.06153 1.06041 1.64157 0.74494 1.20207 0.95199 0.82120 1.11317 1.17143 0.81907 0.86974 0.76982 1.90867 1.86505 1.12354 1.49431 1.45296 1.05342 1.09327 1.74292 1.21962 0.77639 0.96999 1.04677 0.84663 1.25477 0.98414 1.03768 0.92634 0.87690 1.21675 0.84765 0.92625 0.94777 1.45126 1.01404 1.83653 1.01364 1.19004 0.79566 1.33716 1.03408 0.90453 1.24920 0.98265 0.98734 0.98314 1.69896 1.34896 1.39527 1.11673 0.86071 0.84361 0.77278 0.77855 1.21544 1.21605 1.20458 1.21133 0.89300 0.95693 0.90982 1.24265 0.96629 1.00855 0.98572 0.88089 1.20874 0.89115 0.99385 1.03885 1.17994 0.92927 0.92301 1.08596 1.18994 0.90920 0.95247 0.97634 1.20883 0.99918 0.94290 1.02580 0.91499 0.91251 0.91883 0.85612 0.86007 0.77393 0.95083 0.89149 0.93453 0.95368 0.92915 0.82662 0.90837 0.91243 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.57 36.01 0.34 -0.28 16 2 C -0.12 -1.01 5.84 -105.01 -0.61 -1.62 16 3 C -0.08 -0.64 9.66 -39.53 -0.38 -1.02 16 4 C -0.14 -1.14 10.08 -39.42 -0.40 -1.54 16 5 C 0.11 1.15 7.25 -83.97 -0.61 0.54 16 6 N -0.58 -5.53 6.07 -7.35 -0.04 -5.58 16 7 H 0.42 2.80 8.12 -40.82 -0.33 2.47 16 8 C 0.02 0.25 6.97 -82.29 -0.57 -0.32 16 9 C 0.58 8.50 7.80 -12.68 -0.10 8.40 16 10 O -0.52 -9.44 16.40 5.24 0.09 -9.36 16 11 N -0.69 -9.17 5.56 -55.00 -0.31 -9.48 16 12 C 0.09 1.53 5.93 -67.93 -0.40 1.13 16 13 H 0.14 2.54 7.40 -51.92 -0.38 2.16 16 14 C -0.18 -3.36 7.34 -87.43 -0.64 -4.00 16 15 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 16 C 0.19 4.49 5.76 -0.54 0.00 4.49 16 17 N -0.59 -15.00 3.38 -166.70 -0.56 -15.57 16 18 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 20 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 21 N -0.91 -26.64 10.86 55.49 0.60 -26.04 16 22 Si 0.91 21.76 29.56 -169.99 -5.03 16.73 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.16 3.21 7.04 -2.41 -0.02 3.20 16 27 C -0.18 -3.12 6.97 -89.29 -0.62 -3.74 16 28 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 29 C -0.11 -1.27 10.12 -39.15 -0.40 -1.67 16 30 C -0.11 -1.26 5.98 -106.93 -0.64 -1.90 16 31 C -0.03 -0.26 5.88 -104.57 -0.62 -0.87 16 32 C -0.12 -0.87 9.50 36.01 0.34 -0.53 16 33 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.07 0.34 5.88 -51.93 -0.31 0.04 16 35 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.39 3.91 7.88 -40.82 -0.32 3.59 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.51 7.84 -51.93 -0.41 0.11 16 47 H 0.07 0.41 5.88 -51.93 -0.31 0.10 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -32.97 385.51 -11.60 -44.57 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.59 Total: 5.34 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -5.57 Total: -6.44 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.31 Total: -56.66 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.97 -11.60 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961453378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.264 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds