Wall clock time and date at job start Tue Mar 31 2020 22:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38940 * 119.69482 * 2 1 4 4 C 1.37662 * 120.65115 * 179.97438 * 3 2 1 5 5 C 1.39231 * 119.81232 * 0.27206 * 4 3 2 6 6 N 1.37478 * 133.18647 * 179.72238 * 5 4 3 7 7 H 0.97001 * 125.60458 * 0.02562 * 6 5 4 8 8 C 1.38138 * 108.78943 * 180.02562 * 6 5 4 9 9 C 1.47059 * 125.43019 * 180.02562 * 8 6 5 10 10 O 1.21643 * 120.00466 * 180.02562 * 9 8 6 11 11 N 1.34776 * 120.00233 * 0.02562 * 9 8 6 12 12 C 1.46492 * 120.00475 * 179.97438 * 11 9 8 13 13 H 1.09007 * 115.51806 * 9.41381 * 12 11 9 14 14 C 1.53003 * 117.44410 * 223.99697 * 12 11 9 15 15 H 1.09000 * 119.53714 * 4.12230 * 14 12 11 16 16 C 1.57742 * 116.08228 * 161.57576 * 14 12 11 17 17 N 1.48144 * 104.61842 * 87.40748 * 16 14 12 18 18 C 1.36936 * 127.83890 * 139.75704 * 17 16 14 19 19 H 1.07997 * 120.00197 * 195.55118 * 18 17 16 20 20 C 1.38809 * 120.00001 * 15.56201 * 18 17 16 21 21 N 1.31623 * 119.99927 * 9.00072 * 20 18 17 22 22 Si 1.86797 * 120.00250 * 189.00807 * 20 18 17 23 23 H 1.48498 * 109.47432 * 94.43961 * 22 20 18 24 24 H 1.48495 * 109.47308 * 214.44309 * 22 20 18 25 25 H 1.48503 * 109.46974 * 334.43795 * 22 20 18 26 26 C 1.48151 * 104.32518 * 319.76502 * 17 16 14 27 27 C 1.53002 * 117.44698 * 154.82920 * 12 11 9 28 28 H 1.09003 * 119.53755 * 355.88362 * 27 12 11 29 29 C 1.35875 * 109.13939 * 359.42816 * 8 6 5 30 30 C 1.40857 * 119.42133 * 359.44034 * 5 4 3 31 31 C 1.36442 * 119.69221 * 179.97438 * 2 1 3 32 32 C 1.50703 * 120.08420 * 0.02715 * 31 2 1 33 33 H 1.09008 * 109.46486 * 90.00487 * 1 2 3 34 34 H 1.09003 * 109.47427 * 210.00058 * 1 2 3 35 35 H 1.09000 * 109.47370 * 330.00325 * 1 2 3 36 36 H 1.08005 * 119.66957 * 0.02562 * 3 2 1 37 37 H 1.08003 * 120.09208 * 180.02562 * 4 3 2 38 38 H 0.97011 * 119.99686 * 359.97438 * 11 9 8 39 39 H 1.09002 * 110.95850 * 328.34354 * 16 14 12 40 40 H 1.08999 * 109.85863 * 205.92103 * 16 14 12 41 41 H 0.97001 * 119.99553 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.40222 * 280.80275 * 26 17 16 43 43 H 1.09000 * 110.50952 * 158.41411 * 26 17 16 44 44 H 1.08004 * 126.13726 * 179.97438 * 29 8 6 45 45 H 1.08993 * 109.47283 * 89.99759 * 32 31 2 46 46 H 1.09000 * 109.46613 * 209.99874 * 32 31 2 47 47 H 1.09004 * 109.47036 * 329.99634 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.2069 0.0000 4 6 3.5718 1.2299 0.0005 5 6 4.2840 0.0336 -0.0047 6 7 5.6267 -0.2620 -0.0104 7 1 6.3478 0.3868 -0.0115 8 6 5.7800 -1.6349 -0.0144 9 6 7.0654 -2.3491 -0.0205 10 8 7.0855 -3.5654 -0.0241 11 7 8.2214 -1.6562 -0.0221 12 6 9.5020 -2.3676 -0.0275 13 1 9.4407 -3.4436 -0.1910 14 6 10.5955 -1.8586 0.9138 15 1 10.3761 -1.0403 1.5996 16 6 11.7661 -2.8684 1.2272 17 7 12.7489 -2.6505 0.1403 18 6 14.1144 -2.6165 0.2369 19 1 14.7027 -2.2055 -0.5701 20 6 14.7424 -3.1104 1.3720 21 7 14.0472 -3.7695 2.2746 22 14 16.5741 -2.8395 1.6186 23 1 16.7879 -1.6252 2.4462 24 1 17.1604 -4.0173 2.3071 25 1 17.2302 -2.6607 0.2985 26 6 11.9192 -2.4776 -1.0748 27 6 10.7136 -1.6344 -0.6066 28 1 10.5822 -0.6490 -1.0536 29 6 4.5538 -2.2201 0.0015 30 6 3.5839 -1.1886 0.0016 31 6 2.1829 -1.1853 0.0005 32 6 1.4243 -2.4874 0.0005 33 1 -0.3632 -0.0001 -1.0278 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3634 0.8900 0.5138 36 1 1.6450 2.1362 0.0004 37 1 4.0976 2.1733 0.0009 38 1 8.2055 -0.6862 -0.0195 39 1 11.4072 -3.8976 1.2144 40 1 12.2101 -2.6320 2.1942 41 1 14.4861 -4.1144 3.0679 42 1 11.5841 -3.4458 -1.4471 43 1 12.4775 -1.9471 -1.8461 44 1 4.3547 -3.2816 0.0024 45 1 1.2418 -2.8016 -1.0271 46 1 2.0103 -3.2492 0.5147 47 1 0.4722 -2.3533 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961453378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:03 Heat of formation + Delta-G solvation = 59.906761 kcal Electronic energy + Delta-G solvation = -27716.673583 eV Core-core repulsion = 23865.503563 eV Total energy + Delta-G solvation = -3851.170019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.68618 -41.03257 -39.77257 -38.45840 -36.21517 -34.47812 -34.21263 -32.59809 -31.98467 -30.85741 -28.80964 -28.51915 -27.54381 -26.71074 -25.06041 -23.27443 -22.21460 -21.91438 -21.83217 -21.10653 -20.90488 -19.31236 -18.85935 -17.94107 -17.57938 -16.77140 -16.46390 -16.40480 -16.10230 -15.69754 -15.44666 -15.37127 -14.96803 -14.74780 -14.65108 -14.45097 -14.27671 -13.87101 -13.81059 -13.50251 -13.38528 -13.35818 -13.25343 -12.91174 -12.73627 -12.65098 -12.18414 -12.14544 -12.04168 -11.94215 -11.90076 -11.74489 -11.65388 -11.47435 -10.86649 -10.77979 -10.75266 -9.89035 -9.11821 -8.95344 -8.64373 -7.93660 -5.31243 -0.29736 0.62522 1.01640 1.46101 1.47537 1.57365 1.66210 1.91461 2.12396 2.46700 2.81557 2.86252 3.25675 3.48291 3.59166 3.70175 3.78943 3.86338 4.02062 4.04582 4.06793 4.24815 4.30748 4.32093 4.37071 4.40677 4.61758 4.67306 4.71191 4.80808 4.84305 4.87457 4.95334 4.97045 5.04614 5.04942 5.19263 5.22850 5.28729 5.34442 5.39880 5.46746 5.48265 5.56629 5.61355 5.65433 5.83471 6.13356 6.14116 6.27879 6.46661 6.92550 6.97685 7.64831 8.42922 9.20112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.001805 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.018653 B =15508.287462 C =15836.117961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.141 4.141 5 C 0.104 3.896 6 N -0.565 5.565 7 H 0.431 0.569 8 C 0.007 3.993 9 C 0.587 3.413 10 O -0.562 6.562 11 N -0.677 5.677 12 C 0.111 3.889 13 H 0.110 0.890 14 C -0.183 4.183 15 H 0.128 0.872 16 C 0.189 3.811 17 N -0.616 5.616 18 C -0.241 4.241 19 H 0.085 0.915 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.148 3.852 27 C -0.157 4.157 28 H 0.141 0.859 29 C -0.113 4.113 30 C -0.139 4.139 31 C -0.045 4.045 32 C -0.120 4.120 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.413 0.587 39 H -0.001 1.001 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.021 0.979 43 H 0.067 0.933 44 H 0.150 0.850 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.856 13.909 -5.783 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.162 4.162 5 C -0.006 4.006 6 N -0.171 5.171 7 H 0.271 0.729 8 C -0.102 4.102 9 C 0.375 3.625 10 O -0.440 6.440 11 N -0.326 5.326 12 C 0.005 3.995 13 H 0.127 0.873 14 C -0.204 4.204 15 H 0.146 0.854 16 C 0.063 3.937 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.258 4.258 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.022 3.978 27 C -0.178 4.178 28 H 0.159 0.841 29 C -0.141 4.141 30 C -0.143 4.143 31 C -0.046 4.046 32 C -0.176 4.176 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.250 0.750 39 H 0.017 0.983 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.167 0.833 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -28.426 13.027 -5.679 31.781 hybrid contribution 1.778 0.260 0.454 1.853 sum -26.649 13.287 -5.225 30.233 Atomic orbital electron populations 1.20854 0.89296 1.03655 1.02907 1.19606 0.97523 0.92016 1.03587 1.21161 0.92845 0.98550 0.97337 1.20361 0.94252 0.95035 1.06534 1.18592 0.82920 0.96027 1.03071 1.41772 1.06592 1.05097 1.63638 0.72889 1.19725 0.93733 0.83328 1.13461 1.17416 0.82720 0.86504 0.75823 1.90847 1.87177 1.14437 1.51546 1.44995 1.03685 1.10214 1.73744 1.21488 0.78802 0.96176 1.03066 0.87262 1.25134 0.97978 1.03184 0.94139 0.85388 1.21385 0.86446 0.92534 0.93328 1.45410 1.01410 1.83816 1.03357 1.19420 0.81026 1.32959 1.03494 0.89706 1.25797 1.02699 0.98989 0.98281 1.70106 1.36500 1.40966 1.12077 0.85000 0.79145 0.76687 0.78105 1.21161 1.22259 1.18919 1.21295 0.90317 0.96234 0.89953 1.24175 0.95099 1.01698 0.96824 0.84138 1.20994 0.89788 0.99631 1.03683 1.18210 0.93812 0.92371 1.09898 1.19294 0.90561 0.96654 0.98060 1.20913 1.00341 0.93323 1.03020 0.90669 0.90723 0.90503 0.82795 0.83576 0.74953 0.98278 0.92521 0.94089 0.96148 0.91411 0.83272 0.90348 0.92092 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.57 71.24 0.68 -0.22 16 2 C -0.13 -1.76 5.84 -20.11 -0.12 -1.88 16 3 C -0.08 -0.97 9.66 22.30 0.22 -0.76 16 4 C -0.14 -1.96 10.08 22.37 0.23 -1.73 16 5 C 0.10 1.96 7.25 39.14 0.28 2.24 16 6 N -0.56 -9.83 6.07 -177.18 -1.08 -10.91 16 7 H 0.43 4.64 8.12 -92.71 -0.75 3.89 16 8 C 0.01 0.18 6.97 39.92 0.28 0.45 16 9 C 0.59 17.03 7.80 86.56 0.68 17.71 16 10 O -0.56 -21.28 16.40 -4.17 -0.07 -21.34 16 11 N -0.68 -16.88 5.56 -446.15 -2.48 -19.36 16 12 C 0.11 3.61 5.93 44.99 0.27 3.88 16 13 H 0.11 4.25 7.40 -2.38 -0.02 4.23 16 14 C -0.18 -6.68 7.34 -8.73 -0.06 -6.74 16 15 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 16 C 0.19 9.45 5.76 87.74 0.51 9.95 16 17 N -0.62 -31.78 3.38 -681.31 -2.30 -34.08 16 18 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 19 H 0.09 4.47 7.84 -2.91 -0.02 4.45 16 20 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 21 N -0.95 -57.56 10.86 21.65 0.24 -57.33 16 22 Si 0.98 45.36 29.56 68.60 2.03 47.39 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.15 6.02 7.04 86.53 0.61 6.63 16 27 C -0.16 -5.08 6.97 -9.93 -0.07 -5.14 16 28 H 0.14 3.52 8.14 -2.39 -0.02 3.51 16 29 C -0.11 -2.78 10.12 22.55 0.23 -2.55 16 30 C -0.14 -2.99 5.98 -21.36 -0.13 -3.12 16 31 C -0.04 -0.79 5.88 -19.83 -0.12 -0.91 16 32 C -0.12 -1.64 9.50 71.24 0.68 -0.96 16 33 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.07 0.53 5.88 -2.39 -0.01 0.52 16 35 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 36 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.41 7.01 7.88 -92.70 -0.73 6.28 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.06 3.18 6.51 -2.39 -0.02 3.16 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 0.92 7.84 -2.39 -0.02 0.90 16 47 H 0.09 0.87 5.88 -2.39 -0.01 0.85 16 Total: -1.00 -75.11 385.51 1.35 -73.76 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.46 Total: 20.75 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.48 Total: 1.13 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -5.62 Total: -121.68 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.07 Total: -21.34 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.11 1.35 -73.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961453378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.665 kcal (2) G-P(sol) polarization free energy of solvation -75.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds