Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36826 * 125.03590 * 2 1 4 4 H 0.97005 * 125.06171 * 359.95905 * 3 2 1 5 5 C 1.37687 * 109.87851 * 179.97438 * 3 2 1 6 6 C 1.39123 * 133.51085 * 180.02562 * 5 3 2 7 7 C 1.37745 * 119.78112 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.66332 * 359.97438 * 7 6 5 9 9 C 1.36629 * 120.53161 * 0.02562 * 8 7 6 10 10 C 1.39628 * 119.76257 * 359.69822 * 9 8 7 11 11 C 1.34241 * 125.03419 * 179.97438 * 2 1 3 12 12 C 1.50704 * 126.50173 * 0.02562 * 11 2 1 13 13 C 1.50696 * 109.47002 * 90.02355 * 12 11 2 14 14 O 1.21279 * 120.00397 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99844 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00276 * 179.97438 * 15 13 12 17 17 H 1.09002 * 115.49181 * 9.62350 * 16 15 13 18 18 C 1.52996 * 117.44639 * 224.24161 * 16 15 13 19 19 H 1.08999 * 120.26274 * 3.83085 * 18 16 15 20 20 C 1.54391 * 118.11993 * 160.80914 * 18 16 15 21 21 N 1.48153 * 104.61752 * 87.19406 * 20 18 16 22 22 C 1.36933 * 127.83596 * 140.41095 * 21 20 18 23 23 H 1.07998 * 119.99735 * 195.56946 * 22 21 20 24 24 C 1.38810 * 120.00233 * 15.57675 * 22 21 20 25 25 N 1.31610 * 120.00117 * 9.09134 * 24 22 21 26 26 Si 1.86807 * 119.99871 * 189.09663 * 24 22 21 27 27 H 1.48495 * 109.47257 * 89.99750 * 26 24 22 28 28 H 1.48502 * 109.46996 * 209.99879 * 26 24 22 29 29 H 1.48505 * 109.47103 * 329.99633 * 26 24 22 30 30 C 1.48147 * 104.32094 * 320.41191 * 21 20 18 31 31 C 1.52999 * 117.44604 * 154.99914 * 16 15 13 32 32 H 1.09005 * 120.26238 * 356.17904 * 31 16 15 33 33 H 1.08998 * 109.47535 * 270.00236 * 1 2 3 34 34 H 1.09002 * 109.47009 * 30.00241 * 1 2 3 35 35 H 1.09001 * 109.46976 * 149.99970 * 1 2 3 36 36 H 1.08000 * 120.10657 * 0.02562 * 6 5 3 37 37 H 1.08001 * 119.66791 * 179.97438 * 7 6 5 38 38 H 1.08004 * 119.73244 * 179.97438 * 8 7 6 39 39 H 1.08003 * 120.11226 * 180.02562 * 9 8 7 40 40 H 1.08994 * 109.46946 * 330.01970 * 12 11 2 41 41 H 1.09002 * 109.46892 * 210.02525 * 12 11 2 42 42 H 0.97002 * 119.99902 * 359.97438 * 15 13 12 43 43 H 1.08996 * 110.41326 * 328.40725 * 20 18 16 44 44 H 1.09005 * 110.40679 * 205.97385 * 20 18 16 45 45 H 0.97003 * 120.00069 * 180.02562 * 25 24 22 46 46 H 1.08997 * 110.40325 * 158.36698 * 30 21 20 47 47 H 1.08998 * 110.40946 * 280.68293 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9623 2.0324 -0.0006 5 6 3.6214 0.7603 0.0006 6 6 4.8098 1.4837 0.0013 7 6 6.0158 0.8183 0.0023 8 6 6.0589 -0.5693 0.0031 9 6 4.9041 -1.2996 0.0025 10 6 3.6705 -0.6456 0.0073 11 6 2.2776 -1.0992 0.0005 12 6 1.8003 -2.5286 0.0006 13 6 1.6423 -3.0055 -1.4202 14 8 1.8921 -2.2582 -2.3421 15 7 1.2233 -4.2626 -1.6663 16 6 1.0692 -4.7262 -3.0475 17 1 1.4651 -4.0590 -3.8132 18 6 -0.1938 -5.5197 -3.3882 19 1 -0.9682 -5.6692 -2.6359 20 6 -0.6067 -5.6285 -4.8719 21 7 0.1326 -6.8074 -5.3803 22 6 -0.3144 -7.7704 -6.2450 23 1 0.2241 -8.7016 -6.3414 24 6 -1.4596 -7.5498 -6.9977 25 7 -2.0142 -6.3564 -7.0178 26 14 -2.2138 -8.9469 -7.9822 27 1 -3.2046 -9.6661 -7.1419 28 1 -2.8906 -8.3965 -9.1840 29 1 -1.1455 -9.8886 -8.4034 30 6 1.4653 -6.7078 -4.7408 31 6 1.1724 -6.2313 -3.3019 32 1 1.4156 -6.9111 -2.4852 33 1 -0.3634 0.0000 1.0276 34 1 -0.3633 0.8900 -0.5139 35 1 -0.3633 -0.8900 -0.5138 36 1 4.7867 2.5635 0.0019 37 1 6.9373 1.3817 0.0024 38 1 7.0129 -1.0756 0.0035 39 1 4.9455 -2.3788 0.0036 40 1 0.8408 -2.5912 0.5138 41 1 2.5290 -3.1549 0.5152 42 1 1.0239 -4.8605 -0.9290 43 1 -0.3113 -4.7311 -5.4155 44 1 -1.6816 -5.7885 -4.9565 45 1 -2.8147 -6.2024 -7.5436 46 1 1.9536 -7.6822 -4.7265 47 1 2.0851 -5.9806 -5.2652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961643655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = 78.293764 kcal Electronic energy + Delta-G solvation = -28144.192419 eV Core-core repulsion = 24293.819720 eV Total energy + Delta-G solvation = -3850.372699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53648 -39.63849 -38.22771 -37.19876 -34.38548 -33.39009 -32.55483 -31.19007 -30.57077 -29.98213 -28.25248 -27.11923 -26.42953 -25.45168 -22.43744 -22.10715 -21.50403 -20.55233 -20.30099 -19.24065 -19.08098 -17.76711 -16.92003 -16.78625 -16.63242 -16.12747 -15.26911 -15.03287 -14.90855 -14.68826 -14.18445 -13.96956 -13.83978 -13.52221 -13.21284 -13.16461 -13.14516 -12.79565 -12.70061 -12.46851 -12.19922 -12.10464 -11.58495 -11.54702 -11.45512 -11.36339 -10.98443 -10.93032 -10.82321 -10.36641 -10.15852 -10.13398 -9.85664 -9.71715 -9.52617 -9.12640 -8.72319 -8.26252 -8.25137 -7.71876 -6.85174 -5.78057 -3.12517 1.00243 1.52720 2.40826 2.78619 2.91538 3.33711 3.39997 3.44392 3.46443 3.83358 4.34452 4.46873 4.48681 4.60539 4.73889 4.88950 4.96878 4.99029 5.06461 5.16845 5.20365 5.27249 5.34029 5.37984 5.40180 5.43398 5.56530 5.60047 5.62619 5.73662 5.78987 5.86525 5.93498 6.00004 6.21144 6.31012 6.34749 6.50808 6.55215 6.57763 6.69410 6.71445 6.89421 6.92091 7.04250 7.37755 7.39182 7.55806 7.69919 7.73373 8.22300 8.43959 9.12420 9.75147 10.52532 11.36231 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.002070 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.500580 B =13521.672001 C =14067.653031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.096 3.904 3 N -0.592 5.592 4 H 0.413 0.587 5 C 0.097 3.903 6 C -0.131 4.131 7 C -0.103 4.103 8 C -0.148 4.148 9 C -0.069 4.069 10 C -0.087 4.087 11 C -0.152 4.152 12 C -0.063 4.063 13 C 0.512 3.488 14 O -0.526 6.526 15 N -0.702 5.702 16 C 0.103 3.897 17 H 0.130 0.870 18 C -0.183 4.183 19 H 0.101 0.899 20 C 0.185 3.815 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.915 5.915 26 Si 0.913 3.087 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.155 3.845 31 C -0.185 4.185 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.397 0.603 43 H 0.025 0.975 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.051 0.949 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.688 14.302 21.153 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.012 4.012 3 N -0.195 5.195 4 H 0.250 0.750 5 C -0.010 4.010 6 C -0.152 4.152 7 C -0.123 4.123 8 C -0.167 4.167 9 C -0.088 4.088 10 C -0.092 4.092 11 C -0.159 4.159 12 C -0.104 4.104 13 C 0.298 3.702 14 O -0.401 6.401 15 N -0.352 5.352 16 C -0.003 4.003 17 H 0.148 0.852 18 C -0.205 4.205 19 H 0.119 0.881 20 C 0.059 3.941 21 N -0.317 5.317 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.561 5.561 26 Si 0.743 3.257 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.205 1.205 30 C 0.028 3.972 31 C -0.206 4.206 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.231 0.769 43 H 0.043 0.957 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.611 14.896 20.259 26.920 hybrid contribution -0.683 -0.579 -0.124 0.904 sum 8.928 14.318 20.136 26.271 Atomic orbital electron populations 1.20501 0.87717 1.04244 1.02864 1.20014 0.93187 0.85415 1.02534 1.41609 1.04033 1.07990 1.65900 0.75021 1.18164 0.84495 0.94076 1.04257 1.19983 0.89767 0.98805 1.06613 1.20757 0.96571 0.94445 1.00478 1.20603 0.97930 0.93963 1.04178 1.20256 0.90579 0.99514 0.98446 1.18978 0.92952 0.91912 1.05344 1.19230 0.90740 0.92719 1.13246 1.19934 1.03081 0.93092 0.94281 1.20649 0.76690 0.81369 0.91487 1.90725 1.48774 1.54408 1.46192 1.45431 1.68272 1.13688 1.07789 1.21793 1.01611 0.93030 0.83913 0.85245 1.24711 0.90458 1.03258 1.02044 0.88064 1.21055 0.99135 0.89220 0.84707 1.45194 1.07629 1.27336 1.51543 1.18997 1.08281 0.93786 1.14412 0.90523 1.24908 0.99781 0.96714 0.98937 1.69902 1.22498 1.19611 1.44088 0.86103 0.79176 0.81098 0.79282 1.21533 1.21660 1.20530 1.21118 0.89434 0.97971 0.88629 1.24297 1.03065 0.92928 1.00321 0.87902 0.90406 0.91136 0.89590 0.86493 0.85957 0.86163 0.86325 0.88356 0.88302 0.76917 0.95694 0.89183 0.93545 0.93037 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.98 36.00 0.36 -0.39 16 2 C 0.10 1.03 7.08 -81.77 -0.58 0.45 16 3 N -0.59 -5.85 6.07 -6.95 -0.04 -5.89 16 4 H 0.41 2.77 8.96 -40.82 -0.37 2.40 16 5 C 0.10 1.13 7.28 -83.99 -0.61 0.52 16 6 C -0.13 -1.31 10.08 -39.43 -0.40 -1.71 16 7 C -0.10 -0.98 10.01 -39.54 -0.40 -1.38 16 8 C -0.15 -1.50 9.97 -39.94 -0.40 -1.90 16 9 C -0.07 -0.81 10.05 -39.64 -0.40 -1.21 16 10 C -0.09 -1.12 6.35 -105.14 -0.67 -1.79 16 11 C -0.15 -1.82 4.81 -102.71 -0.49 -2.32 16 12 C -0.06 -0.63 5.77 -29.04 -0.17 -0.80 16 13 C 0.51 7.17 7.82 -10.99 -0.09 7.09 16 14 O -0.53 -9.91 15.60 5.56 0.09 -9.82 16 15 N -0.70 -9.26 5.56 -53.81 -0.30 -9.56 16 16 C 0.10 1.75 5.98 -67.93 -0.41 1.35 16 17 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 18 C -0.18 -3.50 7.06 -89.22 -0.63 -4.13 16 19 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 20 C 0.18 4.53 5.70 -2.40 -0.01 4.52 16 21 N -0.59 -15.40 3.38 -168.86 -0.57 -15.97 16 22 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 23 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 24 C -0.01 -0.18 5.40 -17.44 -0.09 -0.27 16 25 N -0.91 -27.07 10.86 55.49 0.60 -26.46 16 26 Si 0.91 22.03 29.56 -169.99 -5.03 17.00 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 30 C 0.16 3.31 7.04 -2.41 -0.02 3.30 16 31 C -0.18 -3.28 7.05 -89.22 -0.63 -3.91 16 32 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 40 H 0.10 0.72 7.69 -51.93 -0.40 0.32 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.40 3.92 8.83 -40.82 -0.36 3.56 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 2.44 6.51 -51.93 -0.34 2.11 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -35.52 390.72 -12.01 -47.53 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.87 Total: 6.38 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -5.78 Total: -9.10 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.31 Total: -57.88 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.52 -12.01 -47.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961643655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.825 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds