Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36826 * 125.03590 * 2 1 4 4 H 0.97005 * 125.06171 * 359.95905 * 3 2 1 5 5 C 1.37687 * 109.87851 * 179.97438 * 3 2 1 6 6 C 1.39123 * 133.51085 * 180.02562 * 5 3 2 7 7 C 1.37745 * 119.78112 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.66332 * 359.97438 * 7 6 5 9 9 C 1.36629 * 120.53161 * 0.02562 * 8 7 6 10 10 C 1.39628 * 119.76257 * 359.69822 * 9 8 7 11 11 C 1.34241 * 125.03419 * 179.97438 * 2 1 3 12 12 C 1.50704 * 126.50173 * 0.02562 * 11 2 1 13 13 C 1.50696 * 109.47002 * 90.02355 * 12 11 2 14 14 O 1.21279 * 120.00397 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99844 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00276 * 179.97438 * 15 13 12 17 17 H 1.09002 * 115.49181 * 9.62350 * 16 15 13 18 18 C 1.52996 * 117.44639 * 224.24161 * 16 15 13 19 19 H 1.08999 * 120.26274 * 3.83085 * 18 16 15 20 20 C 1.54391 * 118.11993 * 160.80914 * 18 16 15 21 21 N 1.48153 * 104.61752 * 87.19406 * 20 18 16 22 22 C 1.36933 * 127.83596 * 140.41095 * 21 20 18 23 23 H 1.07998 * 119.99735 * 195.56946 * 22 21 20 24 24 C 1.38810 * 120.00233 * 15.57675 * 22 21 20 25 25 N 1.31610 * 120.00117 * 9.09134 * 24 22 21 26 26 Si 1.86807 * 119.99871 * 189.09663 * 24 22 21 27 27 H 1.48495 * 109.47257 * 89.99750 * 26 24 22 28 28 H 1.48502 * 109.46996 * 209.99879 * 26 24 22 29 29 H 1.48505 * 109.47103 * 329.99633 * 26 24 22 30 30 C 1.48147 * 104.32094 * 320.41191 * 21 20 18 31 31 C 1.52999 * 117.44604 * 154.99914 * 16 15 13 32 32 H 1.09005 * 120.26238 * 356.17904 * 31 16 15 33 33 H 1.08998 * 109.47535 * 270.00236 * 1 2 3 34 34 H 1.09002 * 109.47009 * 30.00241 * 1 2 3 35 35 H 1.09001 * 109.46976 * 149.99970 * 1 2 3 36 36 H 1.08000 * 120.10657 * 0.02562 * 6 5 3 37 37 H 1.08001 * 119.66791 * 179.97438 * 7 6 5 38 38 H 1.08004 * 119.73244 * 179.97438 * 8 7 6 39 39 H 1.08003 * 120.11226 * 180.02562 * 9 8 7 40 40 H 1.08994 * 109.46946 * 330.01970 * 12 11 2 41 41 H 1.09002 * 109.46892 * 210.02525 * 12 11 2 42 42 H 0.97002 * 119.99902 * 359.97438 * 15 13 12 43 43 H 1.08996 * 110.41326 * 328.40725 * 20 18 16 44 44 H 1.09005 * 110.40679 * 205.97385 * 20 18 16 45 45 H 0.97003 * 120.00069 * 180.02562 * 25 24 22 46 46 H 1.08997 * 110.40325 * 158.36698 * 30 21 20 47 47 H 1.08998 * 110.40946 * 280.68293 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9623 2.0324 -0.0006 5 6 3.6214 0.7603 0.0006 6 6 4.8098 1.4837 0.0013 7 6 6.0158 0.8183 0.0023 8 6 6.0589 -0.5693 0.0031 9 6 4.9041 -1.2996 0.0025 10 6 3.6705 -0.6456 0.0073 11 6 2.2776 -1.0992 0.0005 12 6 1.8003 -2.5286 0.0006 13 6 1.6423 -3.0055 -1.4202 14 8 1.8921 -2.2582 -2.3421 15 7 1.2233 -4.2626 -1.6663 16 6 1.0692 -4.7262 -3.0475 17 1 1.4651 -4.0590 -3.8132 18 6 -0.1938 -5.5197 -3.3882 19 1 -0.9682 -5.6692 -2.6359 20 6 -0.6067 -5.6285 -4.8719 21 7 0.1326 -6.8074 -5.3803 22 6 -0.3144 -7.7704 -6.2450 23 1 0.2241 -8.7016 -6.3414 24 6 -1.4596 -7.5498 -6.9977 25 7 -2.0142 -6.3564 -7.0178 26 14 -2.2138 -8.9469 -7.9822 27 1 -3.2046 -9.6661 -7.1419 28 1 -2.8906 -8.3965 -9.1840 29 1 -1.1455 -9.8886 -8.4034 30 6 1.4653 -6.7078 -4.7408 31 6 1.1724 -6.2313 -3.3019 32 1 1.4156 -6.9111 -2.4852 33 1 -0.3634 0.0000 1.0276 34 1 -0.3633 0.8900 -0.5139 35 1 -0.3633 -0.8900 -0.5138 36 1 4.7867 2.5635 0.0019 37 1 6.9373 1.3817 0.0024 38 1 7.0129 -1.0756 0.0035 39 1 4.9455 -2.3788 0.0036 40 1 0.8408 -2.5912 0.5138 41 1 2.5290 -3.1549 0.5152 42 1 1.0239 -4.8605 -0.9290 43 1 -0.3113 -4.7311 -5.4155 44 1 -1.6816 -5.7885 -4.9565 45 1 -2.8147 -6.2024 -7.5436 46 1 1.9536 -7.6822 -4.7265 47 1 2.0851 -5.9806 -5.2652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961643655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = 55.927023 kcal Electronic energy + Delta-G solvation = -28145.162314 eV Core-core repulsion = 24293.819720 eV Total energy + Delta-G solvation = -3851.342594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30084 -40.97794 -39.68323 -37.94549 -36.03310 -34.40344 -34.05198 -32.17007 -31.87755 -30.99936 -29.10672 -28.91108 -27.64375 -26.93688 -23.76291 -23.13020 -22.33135 -21.94497 -21.72277 -20.85592 -19.96995 -18.86679 -18.53460 -17.94129 -17.53211 -17.35882 -16.73457 -16.03543 -15.95803 -15.76049 -15.59047 -15.08846 -14.94565 -14.71298 -14.66935 -14.57807 -13.93467 -13.77853 -13.71588 -13.59279 -13.31817 -13.21461 -13.11949 -12.87426 -12.79811 -12.70140 -12.30066 -12.19242 -12.10956 -12.02803 -11.87019 -11.68380 -11.63151 -10.98867 -10.81850 -10.70369 -10.40436 -9.64685 -9.02957 -8.93496 -8.48955 -7.91992 -5.29505 0.23470 0.74102 1.46512 1.48738 1.57018 1.57989 1.67638 2.19659 2.24962 2.49050 2.87936 3.03204 3.28800 3.60789 3.74701 3.86341 3.87685 3.95159 3.96887 4.11765 4.15741 4.21154 4.30727 4.39460 4.41256 4.47888 4.54607 4.62377 4.67275 4.74696 4.83603 4.85618 4.89912 4.98942 5.00314 5.07596 5.10247 5.26737 5.29365 5.43004 5.46470 5.59790 5.60222 5.64196 5.74158 5.81998 5.91901 6.15897 6.28415 6.66062 6.72714 6.99304 7.37963 7.66579 8.45292 9.21965 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.002070 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.500580 B =13521.672001 C =14067.653031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 N -0.587 5.587 4 H 0.425 0.575 5 C 0.073 3.927 6 C -0.137 4.137 7 C -0.110 4.110 8 C -0.153 4.153 9 C -0.093 4.093 10 C -0.117 4.117 11 C -0.184 4.184 12 C -0.052 4.052 13 C 0.513 3.487 14 O -0.580 6.580 15 N -0.685 5.685 16 C 0.122 3.878 17 H 0.097 0.903 18 C -0.186 4.186 19 H 0.125 0.875 20 C 0.189 3.811 21 N -0.617 5.617 22 C -0.240 4.240 23 H 0.085 0.915 24 C -0.066 4.066 25 N -0.950 5.950 26 Si 0.984 3.016 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.266 1.266 30 C 0.146 3.854 31 C -0.161 4.161 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.419 0.581 43 H -0.011 1.011 44 H 0.057 0.943 45 H 0.250 0.750 46 H 0.066 0.934 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 13.735 23.670 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.016 4.016 3 N -0.192 5.192 4 H 0.264 0.736 5 C -0.033 4.033 6 C -0.158 4.158 7 C -0.129 4.129 8 C -0.172 4.172 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.191 4.191 12 C -0.091 4.091 13 C 0.302 3.698 14 O -0.458 6.458 15 N -0.336 5.336 16 C 0.015 3.985 17 H 0.115 0.885 18 C -0.207 4.207 19 H 0.143 0.857 20 C 0.063 3.937 21 N -0.342 5.342 22 C -0.369 4.369 23 H 0.102 0.898 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.811 3.189 27 H -0.209 1.209 28 H -0.223 1.223 29 H -0.191 1.191 30 C 0.021 3.979 31 C -0.181 4.181 32 H 0.160 0.840 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.257 0.743 43 H 0.007 0.993 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 10.250 14.317 22.841 28.840 hybrid contribution -0.776 -0.298 -0.937 1.253 sum 9.474 14.019 21.903 27.678 Atomic orbital electron populations 1.20576 0.85826 1.04194 1.04492 1.20502 0.94457 0.85406 1.01224 1.41649 1.03554 1.08654 1.65316 0.73559 1.18506 0.85552 0.94261 1.05030 1.20343 0.89467 1.00052 1.05894 1.21143 0.97561 0.94496 0.99675 1.20936 0.98371 0.94574 1.03328 1.20485 0.90988 1.00083 0.99615 1.19374 0.93792 0.92877 1.06133 1.19554 0.90772 0.93957 1.14786 1.19971 1.05405 0.92412 0.91362 1.21445 0.75024 0.80663 0.92713 1.90712 1.51045 1.55846 1.48209 1.45223 1.67804 1.14058 1.06514 1.21276 0.99425 0.92241 0.85572 0.88475 1.24393 0.91887 1.05618 0.98813 0.85727 1.20770 0.97159 0.87653 0.88130 1.45512 1.09690 1.27090 1.51860 1.19421 1.08388 0.94518 1.14566 0.89778 1.25810 1.00470 0.99143 1.00474 1.70115 1.22788 1.21732 1.45136 0.85006 0.78360 0.78152 0.77360 1.20901 1.22256 1.19065 1.21280 0.87541 0.98691 0.90411 1.24214 1.01062 0.93756 0.99116 0.83989 0.87815 0.90324 0.90478 0.84299 0.83315 0.84258 0.85852 0.85087 0.86008 0.74293 0.99262 0.92434 0.94120 0.91543 0.96703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.98 71.24 0.71 -0.58 16 2 C 0.09 1.88 7.08 40.87 0.29 2.17 16 3 N -0.59 -11.14 6.07 -175.91 -1.07 -12.21 16 4 H 0.43 5.30 8.96 -92.70 -0.83 4.47 16 5 C 0.07 1.68 7.28 39.03 0.28 1.96 16 6 C -0.14 -2.60 10.08 22.37 0.23 -2.37 16 7 C -0.11 -1.94 10.01 22.29 0.22 -1.71 16 8 C -0.15 -2.98 9.97 22.03 0.22 -2.76 16 9 C -0.09 -2.15 10.05 22.23 0.22 -1.93 16 10 C -0.12 -2.97 6.35 -20.20 -0.13 -3.10 16 11 C -0.18 -4.22 4.81 -18.62 -0.09 -4.31 16 12 C -0.05 -0.92 5.77 29.10 0.17 -0.75 16 13 C 0.51 13.72 7.82 87.66 0.69 14.40 16 14 O -0.58 -22.13 15.60 -3.03 -0.05 -22.18 16 15 N -0.69 -16.49 5.56 -442.55 -2.46 -18.95 16 16 C 0.12 4.09 5.98 44.99 0.27 4.36 16 17 H 0.10 3.99 7.40 -2.39 -0.02 3.97 16 18 C -0.19 -6.98 7.06 -9.89 -0.07 -7.05 16 19 H 0.12 4.12 8.14 -2.39 -0.02 4.11 16 20 C 0.19 9.65 5.70 86.53 0.49 10.14 16 21 N -0.62 -32.67 3.38 -688.14 -2.33 -34.99 16 22 C -0.24 -13.64 10.35 84.03 0.87 -12.77 16 23 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 24 C -0.07 -3.77 5.40 84.86 0.46 -3.31 16 25 N -0.95 -58.36 10.86 21.65 0.24 -58.13 16 26 Si 0.98 45.84 29.56 68.60 2.03 47.87 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 30 C 0.15 6.21 7.04 86.53 0.61 6.82 16 31 C -0.16 -5.38 7.05 -9.89 -0.07 -5.45 16 32 H 0.14 3.74 8.14 -2.38 -0.02 3.72 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.13 1.45 7.69 -2.39 -0.02 1.44 16 41 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.42 6.61 8.83 -92.71 -0.82 5.79 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.06 3.28 6.51 -2.38 -0.02 3.27 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -81.69 390.72 1.09 -80.60 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.64 Total: 24.25 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.37 Total: -6.25 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -5.62 Total: -124.28 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -81.69 1.09 -80.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961643655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.528 kcal (2) G-P(sol) polarization free energy of solvation -81.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds