Wall clock time and date at job start Tue Mar 31 2020 23:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34237 * 126.50591 * 2 1 4 4 N 1.36832 * 109.93076 * 180.02562 * 3 2 1 5 5 C 1.46497 * 125.05982 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47032 * 264.97109 * 5 4 3 7 7 O 1.21279 * 120.00336 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00270 * 180.02562 * 8 6 5 10 10 H 1.08995 * 115.51621 * 9.41556 * 9 8 6 11 11 C 1.52998 * 117.44000 * 224.00471 * 9 8 6 12 12 H 1.09003 * 119.54517 * 4.11518 * 11 9 8 13 13 C 1.57741 * 116.08221 * 161.57555 * 11 9 8 14 14 N 1.48149 * 104.61909 * 87.40229 * 13 11 9 15 15 C 1.36932 * 127.83892 * 139.75803 * 14 13 11 16 16 H 1.08004 * 120.00281 * 344.36615 * 15 14 13 17 17 C 1.38815 * 120.00084 * 164.35566 * 15 14 13 18 18 N 1.31620 * 119.99799 * 350.58279 * 17 15 14 19 19 Si 1.86801 * 120.00199 * 170.57728 * 17 15 14 20 20 H 1.48505 * 109.46898 * 60.00342 * 19 17 15 21 21 H 1.48500 * 109.47217 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47165 * 300.00235 * 19 17 15 23 23 C 1.48146 * 104.32223 * 319.76768 * 14 13 11 24 24 C 1.53001 * 117.44478 * 154.83702 * 9 8 6 25 25 H 1.09005 * 119.53626 * 355.87320 * 24 9 8 26 26 C 1.37691 * 109.87518 * 359.97438 * 4 3 2 27 27 C 1.39125 * 133.51045 * 179.97438 * 26 4 3 28 28 C 1.37744 * 119.78019 * 180.02562 * 27 26 4 29 29 C 1.38830 * 120.66518 * 0.26328 * 28 27 26 30 30 C 1.36628 * 120.52832 * 359.45251 * 29 28 27 31 31 C 1.39630 * 119.76275 * 0.55897 * 30 29 28 32 32 H 1.09000 * 109.47138 * 89.97011 * 1 2 3 33 33 H 1.08992 * 109.47165 * 209.97252 * 1 2 3 34 34 H 1.08997 * 109.46555 * 329.97069 * 1 2 3 35 35 H 1.07996 * 125.03079 * 0.02885 * 3 2 1 36 36 H 1.08999 * 109.47520 * 24.97742 * 5 4 3 37 37 H 1.09002 * 109.47314 * 144.97397 * 5 4 3 38 38 H 0.97001 * 119.99915 * 0.02562 * 8 6 5 39 39 H 1.08997 * 110.96167 * 328.33811 * 13 11 9 40 40 H 1.09001 * 109.95839 * 205.96046 * 13 11 9 41 41 H 0.96998 * 119.99805 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.40491 * 280.79507 * 23 14 13 43 43 H 1.08998 * 110.50704 * 158.42206 * 23 14 13 44 44 H 1.07998 * 120.10936 * 359.97438 * 27 26 4 45 45 H 1.08002 * 119.66959 * 179.97438 * 28 27 26 46 46 H 1.08005 * 119.73580 * 179.72114 * 29 28 27 47 47 H 1.08004 * 120.11831 * 180.27704 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 7 3.6171 0.6886 -0.0006 5 6 4.7657 1.5979 -0.0002 6 6 5.2365 1.8130 -1.4155 7 8 4.6683 1.2615 -2.3341 8 7 6.2892 2.6183 -1.6605 9 6 6.7465 2.8278 -3.0364 10 1 6.0934 2.4314 -3.8138 11 6 8.2543 2.7847 -3.2925 12 1 8.9314 2.5362 -2.4752 13 6 8.6973 2.5608 -4.7898 14 7 8.7448 3.9218 -5.3731 15 6 9.6744 4.4325 -6.2393 16 1 10.6179 3.9260 -6.3791 17 6 9.4039 5.6012 -6.9378 18 7 8.1934 6.1175 -6.9130 19 14 10.7578 6.4413 -7.9128 20 1 11.2686 5.5120 -8.9525 21 1 10.2158 7.6618 -8.5622 22 1 11.8655 6.8181 -6.9983 23 6 7.5586 4.6050 -4.8066 24 6 7.4967 4.1263 -3.3401 25 1 7.6092 4.8774 -2.5582 26 6 3.6963 -0.6860 -0.0004 27 6 4.7588 -1.5842 -0.0012 28 6 4.5094 -2.9388 -0.0013 29 6 3.2068 -3.4190 -0.0060 30 6 2.1486 -2.5548 0.0006 31 6 2.3784 -1.1776 0.0003 32 1 -0.3633 0.0005 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3632 0.8897 0.5143 35 1 1.9636 2.1034 0.0004 36 1 4.4726 2.5535 0.4344 37 1 5.5731 1.1632 0.5891 38 1 6.7439 3.0591 -0.9258 39 1 7.9736 1.9440 -5.3225 40 1 9.6844 2.0995 -4.8207 41 1 8.0043 6.9339 -7.4014 42 1 6.6570 4.3075 -5.3419 43 1 7.6849 5.6868 -4.8483 44 1 5.7757 -1.2205 -0.0026 45 1 5.3356 -3.6345 -0.0023 46 1 3.0286 -4.4842 -0.0105 47 1 1.1379 -2.9357 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962020835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:45 Heat of formation + Delta-G solvation = 73.091040 kcal Electronic energy + Delta-G solvation = -28084.354979 eV Core-core repulsion = 24233.756673 eV Total energy + Delta-G solvation = -3850.598306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39022 -41.02253 -39.73851 -37.85789 -36.13910 -34.75189 -34.33115 -32.32108 -31.28749 -30.68036 -29.37987 -28.82985 -27.64052 -26.26498 -23.91283 -23.42589 -22.52848 -22.02953 -21.52991 -20.93622 -20.43099 -18.89944 -18.44085 -18.14739 -17.49421 -17.20369 -16.71508 -16.30163 -16.23374 -15.88451 -15.55873 -15.04982 -14.92574 -14.77789 -14.66995 -14.59368 -13.97197 -13.81589 -13.69474 -13.60955 -13.35719 -13.29554 -13.00175 -12.93626 -12.89136 -12.69666 -12.46492 -12.21674 -12.17895 -12.03994 -11.91757 -11.72007 -11.67049 -11.17192 -10.88330 -10.74122 -10.38514 -9.77218 -9.07701 -8.96422 -8.44439 -7.94812 -5.32062 0.23350 0.70162 1.39026 1.45217 1.47467 1.50309 1.55677 1.85626 2.12958 2.46709 2.81917 3.01582 3.25324 3.50166 3.63143 3.74296 3.78051 3.80214 3.91590 3.93422 4.03480 4.10751 4.15310 4.26867 4.29739 4.47449 4.48242 4.49470 4.67272 4.76533 4.83935 4.87739 4.90538 4.93965 4.95688 5.02914 5.21121 5.23283 5.33107 5.36483 5.41031 5.48929 5.60832 5.60930 5.72525 5.87654 5.91662 6.13058 6.29756 6.32335 6.50381 6.96897 7.13097 7.63813 8.42179 9.19061 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.002024 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.822542 B =13829.765539 C =14355.599784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.195 4.195 3 C 0.049 3.951 4 N -0.473 5.473 5 C 0.099 3.901 6 C 0.493 3.507 7 O -0.575 6.575 8 N -0.676 5.676 9 C 0.113 3.887 10 H 0.097 0.903 11 C -0.163 4.163 12 H 0.145 0.855 13 C 0.147 3.853 14 N -0.616 5.616 15 C -0.244 4.244 16 H 0.083 0.917 17 C -0.063 4.063 18 N -0.949 5.949 19 Si 0.983 3.017 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.188 3.812 24 C -0.176 4.176 25 H 0.131 0.869 26 C 0.085 3.915 27 C -0.142 4.142 28 C -0.108 4.108 29 C -0.155 4.155 30 C -0.086 4.086 31 C -0.132 4.132 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.192 0.808 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.423 0.577 39 H 0.016 0.984 40 H 0.062 0.938 41 H 0.251 0.749 42 H -0.009 1.009 43 H 0.060 0.940 44 H 0.125 0.875 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -12.420 23.285 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.202 4.202 3 C -0.074 4.074 4 N -0.156 5.156 5 C -0.026 4.026 6 C 0.279 3.721 7 O -0.453 6.453 8 N -0.328 5.328 9 C 0.005 3.995 10 H 0.115 0.885 11 C -0.184 4.184 12 H 0.162 0.838 13 C 0.021 3.979 14 N -0.340 5.340 15 C -0.372 4.372 16 H 0.101 0.899 17 C -0.257 4.257 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.199 1.199 23 C 0.062 3.938 24 C -0.197 4.197 25 H 0.149 0.851 26 C -0.020 4.020 27 C -0.163 4.163 28 C -0.127 4.127 29 C -0.174 4.174 30 C -0.104 4.104 31 C -0.136 4.136 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.209 0.791 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.261 0.739 39 H 0.034 0.966 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.009 0.991 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.380 -12.384 22.470 27.677 hybrid contribution 0.801 0.907 -0.981 1.558 sum -9.578 -11.478 21.489 26.178 Atomic orbital electron populations 1.20094 0.87897 1.03101 1.01735 1.20670 0.96519 0.90687 1.12294 1.22064 0.81421 1.00366 1.03583 1.43460 1.05742 1.03521 1.62892 1.21844 0.90225 0.98026 0.92545 1.21732 0.79592 0.78051 0.92733 1.90788 1.57152 1.49539 1.47783 1.45100 1.32156 1.48002 1.07514 1.21356 0.92916 0.99921 0.85265 0.88545 1.24981 0.93733 1.01190 0.98492 0.83781 1.21843 0.98719 0.86996 0.90354 1.45415 1.28034 1.08748 1.51829 1.19361 0.94978 1.06840 1.16019 0.89922 1.25797 0.98828 1.00460 1.00571 1.70095 1.20280 1.22547 1.46688 0.85091 0.78135 0.77420 0.78290 1.20165 1.21992 1.19904 1.20797 0.87660 0.97573 0.87759 1.24288 1.04757 0.91307 0.99316 0.85149 1.18512 0.95990 0.83568 1.03958 1.20273 0.96857 0.92887 1.06283 1.21137 0.97942 0.94197 0.99435 1.20942 0.92253 1.00581 1.03600 1.20527 1.00115 0.90712 0.99047 1.19518 0.92525 0.94303 1.07287 0.92301 0.91451 0.90251 0.79094 0.81977 0.83671 0.73916 0.96596 0.91927 0.94022 0.99068 0.92201 0.85720 0.83734 0.83856 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.41 71.24 0.74 -0.38 16 2 C -0.20 -4.30 6.32 -18.63 -0.12 -4.41 16 3 C 0.05 0.99 11.19 83.00 0.93 1.92 16 4 N -0.47 -10.01 2.27 -520.01 -1.18 -11.19 16 5 C 0.10 1.37 6.48 85.63 0.56 1.92 16 6 C 0.49 11.67 7.90 87.66 0.69 12.36 16 7 O -0.57 -20.85 15.99 -3.03 -0.05 -20.90 16 8 N -0.68 -14.28 5.56 -442.55 -2.46 -16.74 16 9 C 0.11 3.55 5.93 44.99 0.27 3.81 16 10 H 0.10 3.82 7.40 -2.39 -0.02 3.80 16 11 C -0.16 -5.27 7.33 -8.73 -0.06 -5.34 16 12 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 13 C 0.15 6.18 7.10 87.74 0.62 6.80 16 14 N -0.62 -32.06 3.38 -681.31 -2.30 -34.36 16 15 C -0.24 -13.66 10.35 84.04 0.87 -12.79 16 16 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 17 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 18 N -0.95 -57.25 10.88 21.65 0.24 -57.01 16 19 Si 0.98 45.21 29.56 68.60 2.03 47.24 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.19 9.27 5.69 86.53 0.49 9.77 16 24 C -0.18 -6.19 6.97 -9.94 -0.07 -6.26 16 25 H 0.13 3.87 8.14 -2.38 -0.02 3.85 16 26 C 0.09 2.14 6.80 39.03 0.27 2.40 16 27 C -0.14 -3.23 10.00 22.37 0.22 -3.01 16 28 C -0.11 -2.15 10.01 22.29 0.22 -1.93 16 29 C -0.15 -3.00 9.97 22.03 0.22 -2.78 16 30 C -0.09 -1.86 10.05 22.23 0.22 -1.63 16 31 C -0.13 -3.32 6.35 -20.20 -0.13 -3.44 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.16 0.91 8.12 -2.39 -0.02 0.89 16 37 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.42 5.19 8.83 -92.71 -0.82 4.37 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.06 3.30 6.53 -2.39 -0.02 3.28 16 44 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 46 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -81.75 393.83 2.84 -78.91 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.16 Total: 20.14 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 6.40 Total: -6.09 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -5.71 Total: -119.30 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -81.75 2.84 -78.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962020835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.996 kcal (2) G-P(sol) polarization free energy of solvation -81.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds