Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38826 * 119.66600 * 2 1 4 4 C 1.36624 * 120.52810 * 179.97438 * 3 2 1 5 5 C 1.39632 * 119.76232 * 359.97438 * 4 3 2 6 6 C 1.46496 * 134.03148 * 180.31911 * 5 4 3 7 7 C 1.50696 * 126.50087 * 359.97438 * 6 5 4 8 8 C 1.50694 * 109.47029 * 85.17042 * 7 6 5 9 9 O 1.21286 * 120.00207 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00050 * 179.97438 * 10 8 7 12 12 H 1.08996 * 115.51833 * 9.41437 * 11 10 8 13 13 C 1.52999 * 117.44207 * 224.00154 * 11 10 8 14 14 H 1.09005 * 119.54189 * 4.11963 * 13 11 10 15 15 C 1.57739 * 116.08288 * 161.57909 * 13 11 10 16 16 N 1.48138 * 104.61748 * 87.40662 * 15 13 11 17 17 C 1.36941 * 127.83796 * 139.76381 * 16 15 13 18 18 H 1.07997 * 120.00474 * 344.35539 * 17 16 15 19 19 C 1.38820 * 119.99554 * 164.35412 * 17 16 15 20 20 N 1.31611 * 120.00385 * 350.56838 * 19 17 16 21 21 Si 1.86805 * 119.99465 * 170.57475 * 19 17 16 22 22 H 1.48498 * 109.47146 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47186 * 120.00073 * 21 19 17 24 24 H 1.48507 * 109.46740 * 239.99693 * 21 19 17 25 25 C 1.48142 * 104.32479 * 319.76070 * 16 15 13 26 26 C 1.53000 * 117.44148 * 154.83614 * 11 10 8 27 27 H 1.08999 * 119.54021 * 355.88055 * 26 11 10 28 28 C 1.34241 * 106.99321 * 180.11237 * 6 5 4 29 29 N 1.36834 * 109.93212 * 359.59268 * 28 6 5 30 30 H 0.96999 * 125.05832 * 180.24598 * 29 28 6 31 31 C 1.37684 * 109.87237 * 0.26590 * 29 28 6 32 32 C 1.37746 * 119.66312 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47004 * 90.00184 * 1 2 3 34 34 H 1.08998 * 109.47423 * 210.00429 * 1 2 3 35 35 H 1.09002 * 109.46752 * 329.99991 * 1 2 3 36 36 H 1.08002 * 119.73796 * 359.97438 * 3 2 1 37 37 H 1.07995 * 120.12308 * 179.97438 * 4 3 2 38 38 H 1.09000 * 109.46824 * 205.17093 * 7 6 5 39 39 H 1.08999 * 109.47115 * 325.17060 * 7 6 5 40 40 H 0.96995 * 120.00194 * 0.02562 * 10 8 7 41 41 H 1.08999 * 110.96120 * 328.33931 * 15 13 11 42 42 H 1.09005 * 109.85531 * 205.91294 * 15 13 11 43 43 H 0.97001 * 120.00065 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.41177 * 280.80592 * 25 16 15 45 45 H 1.09002 * 110.50847 * 158.41787 * 25 16 15 46 46 H 1.07995 * 125.03018 * 179.86120 * 28 6 5 47 47 H 1.07997 * 120.11412 * 0.04851 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2716 0.0253 0.0016 6 6 5.6966 -0.3144 0.0083 7 6 6.8494 0.6561 0.0158 8 6 7.1494 1.0686 1.4338 9 8 6.4916 0.6192 2.3483 10 7 8.1488 1.9370 1.6859 11 6 8.4401 2.3385 3.0644 12 1 7.9171 1.7761 3.8377 13 6 8.7000 3.8234 3.3264 14 1 8.5963 4.5392 2.5109 15 6 8.5634 4.2975 4.8246 16 7 9.9036 4.0686 5.4128 17 6 10.5871 4.8736 6.2846 18 1 10.2801 5.8993 6.4264 19 6 11.6746 4.3713 6.9861 20 7 11.9369 3.0819 6.9584 21 14 12.7655 5.5256 7.9695 22 1 12.2606 6.9158 7.8381 23 1 12.7480 5.1250 9.3993 24 1 14.1557 5.4533 7.4522 25 6 10.3367 2.7710 4.8441 26 6 9.8616 2.8113 3.3756 27 1 10.6233 2.7731 2.5969 28 6 5.7806 -1.6542 0.0033 29 7 4.5259 -2.2002 0.0031 30 1 4.3319 -3.1506 0.0034 31 6 3.5801 -1.1997 0.0021 32 6 2.1888 -1.1969 0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5139 35 1 -0.3633 0.8900 0.5139 36 1 1.6445 2.1360 -0.0004 37 1 4.0881 2.1690 0.0001 38 1 7.7285 0.1793 -0.4176 39 1 6.5871 1.5364 -0.5709 40 1 8.6747 2.2968 0.9546 41 1 7.8114 3.7109 5.3522 42 1 8.3107 5.3574 4.8559 43 1 12.6970 2.7309 7.4483 44 1 9.8616 1.9459 5.3747 45 1 11.4217 2.6770 4.8900 46 1 6.7019 -2.2175 0.0040 47 1 1.6452 -2.1301 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962025116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = 78.900106 kcal Electronic energy + Delta-G solvation = -27791.811919 eV Core-core repulsion = 23941.465513 eV Total energy + Delta-G solvation = -3850.346406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44483 -39.60572 -38.14979 -37.46583 -34.37985 -33.31850 -32.56956 -31.69609 -30.29855 -29.86778 -27.76662 -26.97687 -26.18844 -25.45101 -22.91466 -22.10548 -21.07499 -20.57869 -20.34795 -19.34206 -19.19360 -17.93554 -16.91491 -16.75075 -16.45585 -16.08720 -15.36895 -14.94067 -14.68484 -14.66459 -14.35589 -13.91833 -13.91132 -13.62049 -13.41835 -13.23523 -13.02574 -12.74986 -12.64670 -12.31705 -12.18958 -12.14416 -11.58143 -11.45148 -11.38462 -11.35472 -10.97027 -10.92389 -10.83857 -10.31360 -10.15364 -10.11260 -9.84633 -9.72260 -9.50577 -9.16607 -8.72142 -8.24759 -8.23646 -7.73907 -6.85444 -5.78971 -3.12913 1.00476 1.51826 2.44998 2.79116 2.96662 3.34770 3.39893 3.44698 3.47114 3.79643 4.37961 4.48014 4.54657 4.62989 4.69734 4.80853 4.99167 5.05573 5.11181 5.17933 5.22886 5.33303 5.37652 5.39543 5.40769 5.44945 5.56105 5.61388 5.64442 5.70324 5.77734 5.82623 5.90364 6.00214 6.19843 6.31543 6.39977 6.48334 6.55593 6.59122 6.65242 6.72091 6.89646 6.92629 7.04684 7.37147 7.37403 7.54860 7.70264 7.73279 8.21368 8.44389 9.11953 9.74736 10.52187 11.35580 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.001933 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.691313 B =14482.722144 C =15044.212029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 C -0.146 4.146 4 C -0.063 4.063 5 C -0.093 4.093 6 C -0.150 4.150 7 C -0.064 4.064 8 C 0.512 3.488 9 O -0.527 6.527 10 N -0.702 5.702 11 C 0.096 3.904 12 H 0.130 0.870 13 C -0.186 4.186 14 H 0.106 0.894 15 C 0.157 3.843 16 N -0.594 5.594 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.186 3.814 26 C -0.181 4.181 27 H 0.100 0.900 28 C 0.062 3.938 29 N -0.595 5.595 30 H 0.415 0.585 31 C 0.100 3.900 32 C -0.134 4.134 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.397 0.603 41 H 0.030 0.970 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.025 0.975 45 H 0.090 0.910 46 H 0.169 0.831 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 -9.488 -21.000 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.165 4.165 4 C -0.081 4.081 5 C -0.098 4.098 6 C -0.158 4.158 7 C -0.105 4.105 8 C 0.298 3.702 9 O -0.402 6.402 10 N -0.352 5.352 11 C -0.010 4.010 12 H 0.147 0.853 13 C -0.208 4.208 14 H 0.124 0.876 15 C 0.030 3.970 16 N -0.317 5.317 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.743 3.257 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.060 3.940 26 C -0.202 4.202 27 H 0.118 0.882 28 C -0.064 4.064 29 N -0.197 5.197 30 H 0.251 0.749 31 C -0.007 4.007 32 C -0.154 4.154 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.231 0.769 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.108 0.892 46 H 0.186 0.814 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.077 -9.940 -20.126 28.204 hybrid contribution 0.983 0.258 0.097 1.021 sum -16.094 -9.682 -20.028 27.457 Atomic orbital electron populations 1.20755 0.91163 1.02710 1.02081 1.19514 0.95633 0.92292 0.99652 1.20491 0.93880 0.97303 1.04845 1.20237 0.93622 0.96407 0.97873 1.18968 0.92368 0.92512 1.05924 1.19512 0.91783 0.92559 1.11900 1.19928 0.96918 0.99251 0.94369 1.20642 0.79625 0.78583 0.91348 1.90725 1.48755 1.54157 1.46607 1.45442 1.35023 1.46370 1.08337 1.21848 0.99221 0.95966 0.83973 0.85277 1.25065 1.04446 0.91288 0.99958 0.87624 1.21706 0.89049 0.98050 0.88168 1.45132 1.13549 1.21925 1.51059 1.19039 1.08986 0.92153 1.15187 0.90469 1.24910 1.00393 0.95908 0.99169 1.69911 1.29949 1.10630 1.45609 0.86038 0.80373 0.79835 0.79457 1.20347 1.21689 1.21645 1.21048 1.00912 0.87670 0.84406 1.24597 0.89974 1.03538 1.02132 0.88180 1.21527 0.87692 0.93564 1.03612 1.41641 1.04595 1.07899 1.65611 0.74876 1.18175 0.90685 0.87972 1.03887 1.19798 0.89836 0.98056 1.07742 0.91352 0.91797 0.91442 0.86159 0.86287 0.88260 0.88314 0.76922 0.95199 0.93181 0.93601 0.95671 0.89206 0.81399 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.99 36.01 0.36 -0.40 16 2 C -0.07 -0.69 5.88 -104.58 -0.61 -1.30 16 3 C -0.15 -1.54 9.61 -39.95 -0.38 -1.93 16 4 C -0.06 -0.75 10.05 -39.64 -0.40 -1.15 16 5 C -0.09 -1.18 6.35 -105.13 -0.67 -1.85 16 6 C -0.15 -1.73 4.81 -102.71 -0.49 -2.22 16 7 C -0.06 -0.62 6.23 -29.04 -0.18 -0.80 16 8 C 0.51 7.16 7.82 -10.99 -0.09 7.07 16 9 O -0.53 -9.92 15.60 5.55 0.09 -9.83 16 10 N -0.70 -9.33 5.56 -53.81 -0.30 -9.63 16 11 C 0.10 1.65 5.93 -67.93 -0.40 1.25 16 12 H 0.13 2.58 7.40 -51.93 -0.38 2.20 16 13 C -0.19 -3.36 7.33 -87.43 -0.64 -4.00 16 14 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.16 3.40 7.10 -0.55 0.00 3.40 16 16 N -0.59 -15.42 3.38 -166.70 -0.56 -15.98 16 17 C -0.23 -6.33 10.35 -15.05 -0.16 -6.49 16 18 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 19 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 20 N -0.91 -26.98 10.88 55.49 0.60 -26.37 16 21 Si 0.91 22.02 29.56 -169.99 -5.03 16.99 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 C 0.19 4.52 5.69 -2.41 -0.01 4.51 16 26 C -0.18 -3.44 6.97 -89.29 -0.62 -4.06 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 28 C 0.06 0.60 11.73 -16.73 -0.20 0.41 16 29 N -0.59 -5.48 6.07 -10.65 -0.06 -5.54 16 30 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 31 C 0.10 1.15 7.28 -83.99 -0.61 0.54 16 32 C -0.13 -1.36 9.71 -39.43 -0.38 -1.74 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 3.98 8.83 -40.82 -0.36 3.62 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 46 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -35.64 392.03 -11.85 -47.49 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.91 Total: 6.03 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -5.59 Total: -9.06 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.32 Total: -57.53 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.64 -11.85 -47.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962025116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.394 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds