Wall clock time and date at job start Tue Mar 31 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38826 * 119.66600 * 2 1 4 4 C 1.36624 * 120.52810 * 179.97438 * 3 2 1 5 5 C 1.39632 * 119.76232 * 359.97438 * 4 3 2 6 6 C 1.46496 * 134.03148 * 180.31911 * 5 4 3 7 7 C 1.50696 * 126.50087 * 359.97438 * 6 5 4 8 8 C 1.50694 * 109.47029 * 85.17042 * 7 6 5 9 9 O 1.21286 * 120.00207 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00050 * 179.97438 * 10 8 7 12 12 H 1.08996 * 115.51833 * 9.41437 * 11 10 8 13 13 C 1.52999 * 117.44207 * 224.00154 * 11 10 8 14 14 H 1.09005 * 119.54189 * 4.11963 * 13 11 10 15 15 C 1.57739 * 116.08288 * 161.57909 * 13 11 10 16 16 N 1.48138 * 104.61748 * 87.40662 * 15 13 11 17 17 C 1.36941 * 127.83796 * 139.76381 * 16 15 13 18 18 H 1.07997 * 120.00474 * 344.35539 * 17 16 15 19 19 C 1.38820 * 119.99554 * 164.35412 * 17 16 15 20 20 N 1.31611 * 120.00385 * 350.56838 * 19 17 16 21 21 Si 1.86805 * 119.99465 * 170.57475 * 19 17 16 22 22 H 1.48498 * 109.47146 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47186 * 120.00073 * 21 19 17 24 24 H 1.48507 * 109.46740 * 239.99693 * 21 19 17 25 25 C 1.48142 * 104.32479 * 319.76070 * 16 15 13 26 26 C 1.53000 * 117.44148 * 154.83614 * 11 10 8 27 27 H 1.08999 * 119.54021 * 355.88055 * 26 11 10 28 28 C 1.34241 * 106.99321 * 180.11237 * 6 5 4 29 29 N 1.36834 * 109.93212 * 359.59268 * 28 6 5 30 30 H 0.96999 * 125.05832 * 180.24598 * 29 28 6 31 31 C 1.37684 * 109.87237 * 0.26590 * 29 28 6 32 32 C 1.37746 * 119.66312 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47004 * 90.00184 * 1 2 3 34 34 H 1.08998 * 109.47423 * 210.00429 * 1 2 3 35 35 H 1.09002 * 109.46752 * 329.99991 * 1 2 3 36 36 H 1.08002 * 119.73796 * 359.97438 * 3 2 1 37 37 H 1.07995 * 120.12308 * 179.97438 * 4 3 2 38 38 H 1.09000 * 109.46824 * 205.17093 * 7 6 5 39 39 H 1.08999 * 109.47115 * 325.17060 * 7 6 5 40 40 H 0.96995 * 120.00194 * 0.02562 * 10 8 7 41 41 H 1.08999 * 110.96120 * 328.33931 * 15 13 11 42 42 H 1.09005 * 109.85531 * 205.91294 * 15 13 11 43 43 H 0.97001 * 120.00065 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.41177 * 280.80592 * 25 16 15 45 45 H 1.09002 * 110.50847 * 158.41787 * 25 16 15 46 46 H 1.07995 * 125.03018 * 179.86120 * 28 6 5 47 47 H 1.07997 * 120.11412 * 0.04851 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2716 0.0253 0.0016 6 6 5.6966 -0.3144 0.0083 7 6 6.8494 0.6561 0.0158 8 6 7.1494 1.0686 1.4338 9 8 6.4916 0.6192 2.3483 10 7 8.1488 1.9370 1.6859 11 6 8.4401 2.3385 3.0644 12 1 7.9171 1.7761 3.8377 13 6 8.7000 3.8234 3.3264 14 1 8.5963 4.5392 2.5109 15 6 8.5634 4.2975 4.8246 16 7 9.9036 4.0686 5.4128 17 6 10.5871 4.8736 6.2846 18 1 10.2801 5.8993 6.4264 19 6 11.6746 4.3713 6.9861 20 7 11.9369 3.0819 6.9584 21 14 12.7655 5.5256 7.9695 22 1 12.2606 6.9158 7.8381 23 1 12.7480 5.1250 9.3993 24 1 14.1557 5.4533 7.4522 25 6 10.3367 2.7710 4.8441 26 6 9.8616 2.8113 3.3756 27 1 10.6233 2.7731 2.5969 28 6 5.7806 -1.6542 0.0033 29 7 4.5259 -2.2002 0.0031 30 1 4.3319 -3.1506 0.0034 31 6 3.5801 -1.1997 0.0021 32 6 2.1888 -1.1969 0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5139 35 1 -0.3633 0.8900 0.5139 36 1 1.6445 2.1360 -0.0004 37 1 4.0881 2.1690 0.0001 38 1 7.7285 0.1793 -0.4176 39 1 6.5871 1.5364 -0.5709 40 1 8.6747 2.2968 0.9546 41 1 7.8114 3.7109 5.3522 42 1 8.3107 5.3574 4.8559 43 1 12.6970 2.7309 7.4483 44 1 9.8616 1.9459 5.3747 45 1 11.4217 2.6770 4.8900 46 1 6.7019 -2.2175 0.0040 47 1 1.6452 -2.1301 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962025116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:29 Heat of formation + Delta-G solvation = 56.618529 kcal Electronic energy + Delta-G solvation = -27792.778121 eV Core-core repulsion = 23941.465513 eV Total energy + Delta-G solvation = -3851.312608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19188 -40.92243 -39.61153 -38.20400 -36.03570 -34.35348 -33.98453 -32.55600 -31.95587 -30.67182 -28.83553 -28.61666 -27.44465 -26.77186 -23.72107 -23.64232 -22.02093 -21.82239 -21.75165 -20.88650 -20.14539 -18.86145 -18.68140 -17.90771 -17.49367 -17.17365 -16.72899 -16.15464 -15.88434 -15.62869 -15.46612 -15.08174 -15.03749 -14.70363 -14.66918 -14.60047 -14.09285 -13.86536 -13.74310 -13.49525 -13.29205 -13.17464 -12.90710 -12.84503 -12.78310 -12.73607 -12.24677 -12.08611 -12.06130 -11.97300 -11.86641 -11.67368 -11.65209 -10.98337 -10.85277 -10.70444 -10.35630 -9.62500 -9.01275 -8.93666 -8.48718 -7.92792 -5.29786 0.23976 0.72617 1.46757 1.47443 1.58955 1.63220 1.69564 2.24224 2.32396 2.48836 2.90691 2.98805 3.28430 3.61819 3.81745 3.85866 3.91200 3.98563 3.98956 4.08172 4.09512 4.17298 4.33216 4.38279 4.44690 4.53037 4.55675 4.64776 4.72135 4.83988 4.87681 4.91255 4.93105 4.96358 4.97221 5.03452 5.19387 5.28717 5.31176 5.42254 5.46190 5.60476 5.64383 5.64609 5.72902 5.84180 5.87975 6.15442 6.29392 6.67296 6.76502 6.99294 7.39311 7.66002 8.44955 9.21475 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.001933 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.691313 B =14482.722144 C =15044.212029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.087 4.087 5 C -0.123 4.123 6 C -0.183 4.183 7 C -0.051 4.051 8 C 0.512 3.488 9 O -0.581 6.581 10 N -0.686 5.686 11 C 0.116 3.884 12 H 0.097 0.903 13 C -0.167 4.167 14 H 0.141 0.859 15 C 0.148 3.852 16 N -0.617 5.617 17 C -0.240 4.240 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.288 1.288 25 C 0.189 3.811 26 C -0.179 4.179 27 H 0.128 0.872 28 C 0.067 3.933 29 N -0.588 5.588 30 H 0.429 0.571 31 C 0.078 3.922 32 C -0.141 4.141 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.419 0.581 41 H 0.017 0.983 42 H 0.061 0.939 43 H 0.250 0.750 44 H -0.008 1.008 45 H 0.059 0.941 46 H 0.199 0.801 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 -9.086 -23.423 30.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.128 4.128 6 C -0.190 4.190 7 C -0.091 4.091 8 C 0.301 3.699 9 O -0.460 6.460 10 N -0.337 5.337 11 C 0.008 3.992 12 H 0.115 0.885 13 C -0.188 4.188 14 H 0.159 0.841 15 C 0.022 3.978 16 N -0.341 5.341 17 C -0.369 4.369 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.596 5.596 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.215 1.215 25 C 0.063 3.937 26 C -0.200 4.200 27 H 0.146 0.854 28 C -0.060 4.060 29 N -0.192 5.192 30 H 0.268 0.732 31 C -0.030 4.030 32 C -0.162 4.162 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.256 0.744 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.010 0.990 45 H 0.077 0.923 46 H 0.216 0.784 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.499 -9.532 -22.611 30.139 hybrid contribution 0.992 0.063 0.883 1.330 sum -16.507 -9.469 -21.728 28.883 Atomic orbital electron populations 1.20790 0.89079 1.03422 1.03108 1.19910 0.97265 0.92001 0.98998 1.20785 0.93773 0.98419 1.04426 1.20443 0.94393 0.96602 0.99081 1.19369 0.93560 0.93204 1.06648 1.19833 0.91811 0.93713 1.13643 1.19960 0.97841 1.00118 0.91180 1.21503 0.78407 0.77329 0.92706 1.90713 1.50573 1.56014 1.48667 1.45250 1.35267 1.46206 1.06991 1.21332 0.97099 0.95079 0.85680 0.88506 1.24977 1.03251 0.92175 0.98370 0.84092 1.21836 0.86924 0.98741 0.90316 1.45437 1.15248 1.22030 1.51376 1.19439 1.09223 0.92760 1.15451 0.89919 1.25799 1.01915 0.97442 1.00660 1.70112 1.30384 1.12455 1.46683 0.84950 0.78168 0.78444 0.77350 1.18737 1.22022 1.21501 1.20787 0.98755 0.86416 0.87725 1.24278 0.91359 1.05145 0.99179 0.85438 1.22086 0.88703 0.93556 1.01666 1.41699 1.04234 1.08445 1.64777 0.73223 1.18481 0.91508 0.88431 1.04541 1.20129 0.89697 0.99129 1.07219 0.90059 0.90920 0.90910 0.84682 0.86061 0.84600 0.86182 0.74354 0.96491 0.92015 0.94067 0.98999 0.92270 0.78372 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.99 71.24 0.71 -0.60 16 2 C -0.08 -1.53 5.88 -19.84 -0.12 -1.65 16 3 C -0.16 -3.23 9.61 22.03 0.21 -3.02 16 4 C -0.09 -2.07 10.05 22.23 0.22 -1.85 16 5 C -0.12 -3.09 6.35 -20.20 -0.13 -3.21 16 6 C -0.18 -3.94 4.81 -18.62 -0.09 -4.03 16 7 C -0.05 -0.85 6.23 29.10 0.18 -0.67 16 8 C 0.51 13.46 7.82 87.66 0.69 14.15 16 9 O -0.58 -21.92 15.60 -3.05 -0.05 -21.96 16 10 N -0.69 -16.53 5.56 -442.53 -2.46 -18.99 16 11 C 0.12 3.87 5.93 44.99 0.27 4.14 16 12 H 0.10 3.99 7.40 -2.39 -0.02 3.97 16 13 C -0.17 -5.71 7.33 -8.73 -0.06 -5.78 16 14 H 0.14 3.92 8.14 -2.38 -0.02 3.90 16 15 C 0.15 6.41 7.10 87.74 0.62 7.03 16 16 N -0.62 -32.74 3.38 -681.33 -2.30 -35.05 16 17 C -0.24 -13.67 10.35 84.03 0.87 -12.80 16 18 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 19 C -0.06 -3.71 5.40 84.87 0.46 -3.26 16 20 N -0.95 -57.89 10.88 21.65 0.24 -57.65 16 21 Si 0.98 45.82 29.56 68.60 2.03 47.84 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 25 C 0.19 9.55 5.69 86.54 0.49 10.04 16 26 C -0.18 -6.62 6.97 -9.93 -0.07 -6.69 16 27 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 28 C 0.07 1.17 11.73 83.00 0.97 2.14 16 29 N -0.59 -10.07 6.07 -187.61 -1.14 -11.21 16 30 H 0.43 4.42 8.96 -92.71 -0.83 3.59 16 31 C 0.08 1.74 7.28 39.03 0.28 2.03 16 32 C -0.14 -2.76 9.71 22.37 0.22 -2.55 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 35 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.42 6.69 8.83 -92.71 -0.82 5.87 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.49 8.14 -2.38 -0.02 2.48 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.06 3.32 6.53 -2.39 -0.02 3.31 16 46 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -81.71 392.03 1.40 -80.30 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.64 Total: 23.28 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.73 Total: -6.56 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.67 Total: -122.90 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -81.71 1.40 -80.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962025116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.923 kcal (2) G-P(sol) polarization free energy of solvation -81.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds