Wall clock time and date at job start Tue Mar 31 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36665 * 120.12254 * 2 1 4 4 C 1.38787 * 120.52836 * 179.70393 * 3 2 1 5 5 C 1.37782 * 120.66889 * 0.25715 * 4 3 2 6 6 C 1.39087 * 119.78084 * 0.02562 * 5 4 3 7 7 N 1.37692 * 133.52026 * 179.97438 * 6 5 4 8 8 H 0.97002 * 125.05680 * 0.02562 * 7 6 5 9 9 C 1.36830 * 109.87430 * 180.02562 * 7 6 5 10 10 C 1.34231 * 109.94179 * 0.02562 * 9 7 6 11 11 C 1.50697 * 126.50250 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47330 * 264.95679 * 11 10 9 13 13 O 1.21288 * 119.99554 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00589 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00332 * 179.97438 * 14 12 11 16 16 H 1.08998 * 115.51306 * 9.42558 * 15 14 12 17 17 C 1.53000 * 117.44365 * 224.00618 * 15 14 12 18 18 H 1.09002 * 119.53905 * 4.11443 * 17 15 14 19 19 C 1.57744 * 116.08276 * 161.57929 * 17 15 14 20 20 N 1.48145 * 104.61437 * 87.40401 * 19 17 15 21 21 C 1.36939 * 127.83727 * 139.76771 * 20 19 17 22 22 H 1.08004 * 119.99301 * 344.34939 * 21 20 19 23 23 C 1.38804 * 120.00256 * 164.35408 * 21 20 19 24 24 N 1.31625 * 119.99926 * 350.56569 * 23 21 20 25 25 Si 1.86798 * 120.00295 * 170.57414 * 23 21 20 26 26 H 1.48499 * 109.47076 * 59.99579 * 25 23 21 27 27 H 1.48494 * 109.47374 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46883 * 299.99887 * 25 23 21 29 29 C 1.48146 * 104.32680 * 319.76277 * 20 19 17 30 30 C 1.52995 * 117.44122 * 154.83512 * 15 14 12 31 31 H 1.09008 * 119.54188 * 355.88698 * 30 15 14 32 32 C 1.39594 * 120.12061 * 180.21948 * 2 1 3 33 33 H 1.08994 * 109.47388 * 269.77739 * 1 2 3 34 34 H 1.09002 * 109.46737 * 29.77669 * 1 2 3 35 35 H 1.08996 * 109.46840 * 149.77375 * 1 2 3 36 36 H 1.08004 * 119.72962 * 359.97438 * 3 2 1 37 37 H 1.07999 * 119.66368 * 180.23995 * 4 3 2 38 38 H 1.08002 * 120.11166 * 180.02562 * 5 4 3 39 39 H 1.07999 * 125.02742 * 179.97438 * 9 7 6 40 40 H 1.09009 * 109.47232 * 24.95480 * 11 10 9 41 41 H 1.09005 * 109.47477 * 144.95465 * 11 10 9 42 42 H 0.97005 * 119.99828 * 0.02562 * 14 12 11 43 43 H 1.09005 * 110.95577 * 328.34295 * 19 17 15 44 44 H 1.08998 * 109.85376 * 205.91465 * 19 17 15 45 45 H 0.96998 * 120.00034 * 180.02562 * 24 23 21 46 46 H 1.09006 * 110.40706 * 280.80264 * 29 20 19 47 47 H 1.08994 * 110.50790 * 158.42284 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1821 0.0000 4 6 3.5807 1.1919 0.0062 5 6 4.2919 0.0118 0.0071 6 6 3.6145 -1.2029 0.0012 7 7 4.0248 -2.5173 0.0000 8 1 4.9488 -2.8126 0.0037 9 6 2.9351 -3.3448 -0.0074 10 6 1.8074 -2.6167 -0.0116 11 6 0.3973 -3.1481 -0.0194 12 6 -0.1100 -3.2059 -1.4373 13 8 0.6033 -2.8501 -2.3514 14 7 -1.3561 -3.6530 -1.6896 15 6 -1.8493 -3.7086 -3.0680 16 1 -1.1032 -3.5261 -3.8413 17 6 -3.2718 -3.2091 -3.3286 18 1 -3.8453 -2.7702 -2.5121 19 6 -3.6194 -2.8558 -4.8261 20 7 -4.0749 -4.1360 -5.4162 21 6 -5.1116 -4.3375 -6.2879 22 1 -5.8564 -3.5680 -6.4281 23 6 -5.2052 -5.5305 -6.9912 24 7 -4.2085 -6.3897 -6.9653 25 14 -6.7458 -5.9165 -7.9747 26 1 -6.9459 -4.8723 -9.0113 27 1 -6.5962 -7.2410 -8.6293 28 1 -7.9196 -5.9429 -7.0655 29 6 -3.1543 -5.1490 -4.8494 30 6 -2.9566 -4.7171 -3.3804 31 1 -3.2953 -5.4017 -2.6026 32 6 2.2075 -1.2074 -0.0046 33 1 -0.3634 -0.0040 1.0276 34 1 -0.3633 0.8920 -0.5104 35 1 -0.3633 -0.8879 -0.5173 36 1 1.6504 2.1160 -0.0004 37 1 4.1085 2.1341 0.0100 38 1 5.3717 0.0300 0.0123 39 1 2.9762 -4.4240 -0.0102 40 1 0.3837 -4.1489 0.4124 41 1 -0.2424 -2.4900 0.5687 42 1 -1.9267 -3.9372 -0.9584 43 1 -2.7401 -2.4857 -5.3535 44 1 -4.4204 -2.1172 -4.8559 45 1 -4.2738 -7.2232 -7.4571 46 1 -2.2024 -5.1370 -5.3805 47 1 -3.6026 -6.1414 -4.8968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962330540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:13 Heat of formation + Delta-G solvation = 81.157510 kcal Electronic energy + Delta-G solvation = -28326.428872 eV Core-core repulsion = 24476.180355 eV Total energy + Delta-G solvation = -3850.248518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49836 -39.62120 -38.14482 -37.28624 -34.39416 -33.81466 -32.59722 -31.43634 -30.23030 -29.41023 -28.13470 -26.98510 -26.20831 -25.41398 -22.27439 -22.07017 -22.00156 -20.56024 -20.33285 -19.28650 -19.09644 -17.59590 -16.92145 -16.76373 -16.55184 -16.10973 -15.54260 -15.14926 -14.69930 -14.68256 -14.36770 -13.90397 -13.53607 -13.50696 -13.30553 -13.21743 -13.01380 -12.81125 -12.69092 -12.25713 -12.21097 -12.17081 -11.46222 -11.45473 -11.42510 -11.32356 -10.96569 -10.86184 -10.80318 -10.33325 -10.18113 -10.13828 -9.80686 -9.71273 -9.45735 -9.16827 -8.71436 -8.31677 -8.25103 -7.69087 -6.85548 -5.78707 -3.12811 1.00383 1.53891 2.45312 2.76702 2.97241 3.34297 3.40730 3.44205 3.45411 3.79531 4.37276 4.48153 4.54475 4.62668 4.75794 4.85920 4.96501 5.03525 5.14096 5.22151 5.27786 5.32192 5.38807 5.40392 5.44168 5.52316 5.59566 5.61122 5.66701 5.77199 5.78724 5.89792 5.91693 6.07112 6.19435 6.30643 6.36924 6.52606 6.55207 6.57205 6.68649 6.71806 6.88689 6.92241 7.05901 7.36885 7.37422 7.54334 7.68748 7.72624 8.21649 8.42666 9.11958 9.74807 10.52262 11.35745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.002084 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.206074 B =13433.362445 C =13884.618260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 C -0.152 4.152 4 C -0.097 4.097 5 C -0.139 4.139 6 C 0.098 3.902 7 N -0.595 5.595 8 H 0.415 0.585 9 C 0.062 3.938 10 C -0.149 4.149 11 C -0.068 4.068 12 C 0.512 3.488 13 O -0.526 6.526 14 N -0.702 5.702 15 C 0.096 3.904 16 H 0.130 0.870 17 C -0.186 4.186 18 H 0.106 0.894 19 C 0.157 3.843 20 N -0.593 5.593 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.915 5.915 25 Si 0.914 3.086 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.186 3.814 30 C -0.181 4.181 31 H 0.100 0.900 32 C -0.088 4.088 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.169 0.831 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.397 0.603 43 H 0.030 0.970 44 H 0.050 0.950 45 H 0.255 0.745 46 H 0.025 0.975 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.107 9.091 20.960 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.032 4.032 3 C -0.171 4.171 4 C -0.116 4.116 5 C -0.159 4.159 6 C -0.009 4.009 7 N -0.197 5.197 8 H 0.252 0.748 9 C -0.064 4.064 10 C -0.156 4.156 11 C -0.109 4.109 12 C 0.298 3.702 13 O -0.401 6.401 14 N -0.352 5.352 15 C -0.010 4.010 16 H 0.147 0.853 17 C -0.207 4.207 18 H 0.124 0.876 19 C 0.030 3.970 20 N -0.316 5.316 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.743 3.257 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.060 3.940 30 C -0.202 4.202 31 H 0.118 0.882 32 C -0.092 4.092 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.186 0.814 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.231 0.769 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.638 9.094 20.080 27.027 hybrid contribution -0.597 -0.642 -0.099 0.882 sum 15.041 8.452 19.981 26.399 Atomic orbital electron populations 1.20887 0.91454 1.03283 1.01905 1.19067 0.95619 0.91216 0.97321 1.20502 0.94092 0.97219 1.05304 1.20735 0.94024 0.96878 0.99955 1.19956 0.98948 0.89612 1.07432 1.18201 0.93637 0.85030 1.03988 1.41646 1.08412 1.04091 1.65565 0.74850 1.21520 0.85337 0.95934 1.03617 1.19465 0.93105 0.91107 1.11932 1.20057 0.93452 1.02920 0.94464 1.20616 0.81243 0.77065 0.91315 1.90732 1.56078 1.46679 1.46573 1.45451 1.15200 1.66146 1.08383 1.21852 0.91448 1.03785 0.83938 0.85268 1.25067 0.97116 0.98572 0.99965 0.87616 1.21707 0.96970 0.90132 0.88161 1.45114 1.34773 1.00663 1.51070 1.18944 0.99678 1.01578 1.15313 0.90582 1.24902 0.98038 0.98225 0.99132 1.69895 1.30034 1.10708 1.45512 0.86181 0.82400 0.77366 0.79703 1.20965 1.21562 1.21093 1.21047 0.93112 0.95460 0.84405 1.24599 1.01064 0.92432 1.02137 0.88178 1.18801 0.91727 0.92566 1.06120 0.91209 0.91435 0.91270 0.86182 0.85942 0.86530 0.81400 0.88318 0.88106 0.76926 0.95210 0.93184 0.93494 0.95682 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.19 36.01 0.33 -0.90 16 2 C -0.03 -0.38 5.87 -104.68 -0.61 -1.00 16 3 C -0.15 -1.62 9.62 -39.95 -0.38 -2.00 16 4 C -0.10 -0.94 10.01 -39.55 -0.40 -1.34 16 5 C -0.14 -1.40 10.08 -39.43 -0.40 -1.79 16 6 C 0.10 1.13 7.28 -83.99 -0.61 0.52 16 7 N -0.59 -5.47 6.07 -10.65 -0.06 -5.53 16 8 H 0.41 2.43 8.96 -40.82 -0.37 2.07 16 9 C 0.06 0.60 11.73 -16.73 -0.20 0.41 16 10 C -0.15 -1.71 4.80 -102.71 -0.49 -2.21 16 11 C -0.07 -0.67 5.32 -29.04 -0.15 -0.82 16 12 C 0.51 7.05 6.69 -10.99 -0.07 6.98 16 13 O -0.53 -9.76 15.60 5.55 0.09 -9.68 16 14 N -0.70 -9.19 5.56 -53.81 -0.30 -9.49 16 15 C 0.10 1.63 5.93 -67.93 -0.40 1.22 16 16 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 17 C -0.19 -3.31 7.34 -87.42 -0.64 -3.95 16 18 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 19 C 0.16 3.38 7.10 -0.54 0.00 3.38 16 20 N -0.59 -15.34 3.38 -166.70 -0.56 -15.91 16 21 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 22 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 23 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 24 N -0.92 -26.94 10.88 55.49 0.60 -26.33 16 25 Si 0.91 21.96 29.56 -169.99 -5.03 16.94 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.19 4.50 5.69 -2.41 -0.01 4.49 16 30 C -0.18 -3.41 6.97 -89.29 -0.62 -4.03 16 31 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 32 C -0.09 -1.12 6.14 -105.14 -0.65 -1.76 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.07 0.80 4.97 -51.93 -0.26 0.54 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.10 0.82 6.58 -51.93 -0.34 0.47 16 42 H 0.40 3.91 8.83 -40.82 -0.36 3.55 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 2.41 6.53 -51.93 -0.34 2.07 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -35.43 384.63 -11.70 -47.13 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.67 Total: 6.64 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -5.57 Total: -9.58 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.32 Total: -57.26 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.43 -11.70 -47.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962330540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.292 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds