Wall clock time and date at job start Tue Mar 31 2020 23:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36863 * 125.01798 * 2 1 4 4 H 0.96991 * 125.01128 * 0.03561 * 3 2 1 5 5 C 1.37404 * 109.98053 * 180.02562 * 3 2 1 6 6 C 1.39367 * 133.25292 * 179.97438 * 5 3 2 7 7 C 1.36307 * 120.24200 * 180.02562 * 6 5 3 8 8 C 1.40216 * 120.66951 * 359.97438 * 7 6 5 9 9 C 1.47649 * 119.97557 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99940 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99981 * 359.97438 * 9 8 7 12 12 C 1.46507 * 119.99981 * 180.02562 * 11 9 8 13 13 H 1.08994 * 115.51437 * 350.41185 * 12 11 9 14 14 C 1.53002 * 117.44095 * 204.99781 * 12 11 9 15 15 H 1.08996 * 119.53821 * 4.11969 * 14 12 11 16 16 C 1.54391 * 118.11825 * 159.21001 * 14 12 11 17 17 N 1.51828 * 102.86364 * 88.02456 * 16 14 12 18 18 C 1.36935 * 127.61098 * 140.54367 * 17 16 14 19 19 H 1.07997 * 120.00097 * 194.64742 * 18 17 16 20 20 C 1.38814 * 120.00240 * 14.65101 * 18 17 16 21 21 N 1.31625 * 119.99574 * 9.01090 * 20 18 17 22 22 Si 1.86792 * 120.00418 * 189.01569 * 20 18 17 23 23 H 1.48500 * 109.47692 * 89.99269 * 22 20 18 24 24 H 1.48503 * 109.47236 * 209.99912 * 22 20 18 25 25 H 1.48503 * 109.46878 * 329.99693 * 22 20 18 26 26 C 1.48144 * 104.55080 * 320.26633 * 17 16 14 27 27 C 1.53000 * 117.44388 * 135.75810 * 12 11 9 28 28 H 1.09001 * 119.53923 * 355.88430 * 27 12 11 29 29 C 1.39151 * 120.04836 * 0.02562 * 8 7 6 30 30 C 1.39267 * 119.39715 * 359.75864 * 29 8 7 31 31 C 1.34193 * 125.02367 * 180.02562 * 2 1 3 32 32 C 1.50701 * 126.53770 * 359.95011 * 31 2 1 33 33 H 1.09003 * 109.47708 * 269.97627 * 1 2 3 34 34 H 1.08996 * 109.47071 * 29.98227 * 1 2 3 35 35 H 1.09002 * 109.46967 * 149.97967 * 1 2 3 36 36 H 1.08000 * 119.87809 * 359.97438 * 6 5 3 37 37 H 1.08000 * 119.67013 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00352 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.40367 * 205.97245 * 16 14 12 40 40 H 1.08993 * 110.40737 * 328.40663 * 16 14 12 41 41 H 0.97003 * 119.99486 * 180.02562 * 21 20 18 42 42 H 1.09001 * 110.40980 * 281.07989 * 26 17 16 43 43 H 1.09000 * 110.40797 * 158.64975 * 26 17 16 44 44 H 1.08001 * 120.30234 * 180.02562 * 29 8 7 45 45 H 1.09000 * 109.47245 * 90.02229 * 32 31 2 46 46 H 1.09003 * 109.47261 * 210.01720 * 32 31 2 47 47 H 1.09004 * 109.47536 * 330.02273 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1209 0.0000 4 1 1.9611 2.0325 0.0005 5 6 3.6193 0.7644 -0.0006 6 6 4.8050 1.4969 -0.0013 7 6 6.0079 0.8560 -0.0023 8 6 6.0721 -0.5447 -0.0021 9 6 7.3834 -1.2232 -0.0037 10 8 7.4395 -2.4377 -0.0031 11 7 8.5182 -0.4961 -0.0060 12 6 9.8195 -1.1693 -0.0082 13 1 9.7911 -2.2465 0.1560 14 6 11.0123 -0.4001 0.5633 15 1 10.8544 0.5811 1.0108 16 6 12.2452 -1.2071 1.0243 17 7 13.0709 -1.3172 -0.2450 18 6 14.4318 -1.2261 -0.3673 19 1 14.8784 -1.0858 -1.3405 20 6 15.2373 -1.3140 0.7598 21 7 14.7144 -1.6604 1.9170 22 14 17.0633 -0.9407 0.6343 23 1 17.2918 0.5045 0.8885 24 1 17.8030 -1.7434 1.6411 25 1 17.5467 -1.2862 -0.7266 26 6 12.0759 -1.5516 -1.3173 27 6 10.8910 -0.6296 -0.9576 28 1 10.6429 0.1808 -1.6430 29 6 4.9007 -1.2958 -0.0014 30 6 3.6703 -0.6435 0.0042 31 6 2.2771 -1.0989 -0.0005 32 6 1.8005 -2.5286 -0.0001 33 1 -0.3634 -0.0004 1.0277 34 1 -0.3633 0.8901 -0.5135 35 1 -0.3633 -0.8898 -0.5142 36 1 4.7704 2.5764 -0.0019 37 1 6.9210 1.4328 -0.0032 38 1 8.4735 0.4728 -0.0069 39 1 12.7934 -0.6588 1.7905 40 1 11.9413 -2.1844 1.3989 41 1 15.2773 -1.7215 2.7046 42 1 11.7587 -2.5945 -1.3201 43 1 12.4905 -1.2770 -2.2872 44 1 4.9453 -2.3749 -0.0008 45 1 1.6852 -2.8735 -1.0276 46 1 2.5301 -3.1547 0.5135 47 1 0.8414 -2.5918 0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962507911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:07 Heat of formation + Delta-G solvation = 78.971187 kcal Electronic energy + Delta-G solvation = -27649.554511 eV Core-core repulsion = 23799.211187 eV Total energy + Delta-G solvation = -3850.343324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74388 -39.82335 -38.29890 -36.85609 -34.35620 -33.58145 -32.67131 -31.42930 -30.49065 -30.02914 -28.26638 -27.09111 -26.25436 -25.58153 -23.75654 -21.90776 -21.67361 -20.43546 -20.23365 -19.44576 -19.15557 -18.03289 -17.43291 -16.81951 -16.35495 -15.82114 -15.41172 -14.98228 -14.64884 -14.58105 -14.34191 -13.99596 -13.65474 -13.48692 -13.36491 -13.21908 -13.14199 -13.01254 -12.95647 -12.69536 -12.54011 -12.11906 -11.90794 -11.71098 -11.42202 -11.38266 -11.08354 -10.97212 -10.80380 -10.39604 -10.15990 -10.10193 -9.86091 -9.81869 -9.63303 -9.15042 -8.71423 -8.51702 -8.23274 -7.90622 -6.84059 -5.75192 -3.08234 0.76163 0.97376 2.26892 2.67920 2.90097 3.19023 3.41356 3.46303 3.48396 3.79327 4.23349 4.39410 4.39939 4.50379 4.61521 4.67984 4.76843 4.85292 4.96469 5.00556 5.14721 5.20833 5.32046 5.38215 5.41944 5.43355 5.45743 5.47244 5.53122 5.61433 5.75372 5.83354 5.85635 5.94459 6.08199 6.16588 6.22052 6.31148 6.34628 6.47458 6.58000 6.73961 6.77426 6.88316 6.94523 7.13647 7.35173 7.55504 7.66732 7.73735 8.18600 8.37084 9.10165 9.76679 10.53783 11.39786 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.001784 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.820657 B =15687.735377 C =16004.833841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.068 3.932 3 N -0.589 5.589 4 H 0.415 0.585 5 C 0.118 3.882 6 C -0.136 4.136 7 C -0.066 4.066 8 C -0.161 4.161 9 C 0.564 3.436 10 O -0.539 6.539 11 N -0.694 5.694 12 C 0.097 3.903 13 H 0.132 0.868 14 C -0.178 4.178 15 H 0.101 0.899 16 C 0.185 3.815 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.159 3.841 27 C -0.183 4.183 28 H 0.102 0.898 29 C 0.000 4.000 30 C -0.115 4.115 31 C -0.159 4.159 32 C -0.081 4.081 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.033 0.967 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.051 0.949 44 H 0.138 0.862 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.046 7.727 -3.445 32.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 N -0.192 5.192 4 H 0.252 0.748 5 C 0.010 3.990 6 C -0.157 4.157 7 C -0.086 4.086 8 C -0.166 4.166 9 C 0.352 3.648 10 O -0.417 6.417 11 N -0.343 5.343 12 C -0.009 4.009 13 H 0.150 0.850 14 C -0.199 4.199 15 H 0.119 0.881 16 C 0.061 3.939 17 N -0.324 5.324 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.032 3.968 27 C -0.204 4.204 28 H 0.121 0.879 29 C -0.019 4.019 30 C -0.120 4.120 31 C -0.166 4.166 32 C -0.138 4.138 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.155 0.845 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.823 6.928 -3.320 31.766 hybrid contribution 0.823 1.503 -0.018 1.714 sum -30.000 8.431 -3.338 31.340 Atomic orbital electron populations 1.20458 0.87614 1.03717 1.03143 1.20084 0.93310 0.85365 1.05142 1.41631 1.04003 1.08257 1.65346 0.74847 1.18346 0.84581 0.94104 1.01988 1.19623 0.89356 0.99236 1.07497 1.20638 0.97268 0.93157 0.97516 1.19621 0.93129 0.93450 1.10361 1.18101 0.83649 0.86929 0.76088 1.90772 1.87430 1.13507 1.50021 1.45284 1.04976 1.09654 1.74356 1.21875 0.77925 0.97461 1.03643 0.84996 1.24590 0.97038 1.01334 0.96970 0.88073 1.21708 0.85931 0.96085 0.90220 1.46073 1.01370 1.83372 1.01539 1.19023 0.79630 1.42503 0.94008 0.90528 1.24870 0.98088 1.01335 0.96175 1.69889 1.34559 1.52411 0.99494 0.86110 0.84676 0.77745 0.77172 1.21616 1.21697 1.20601 1.21057 0.87953 0.94860 0.92944 1.24385 0.98810 1.03441 0.93782 0.87948 1.20657 0.88885 1.00327 0.92035 1.19000 0.93093 0.91856 1.08004 1.20096 0.90266 0.95005 1.11216 1.20156 1.00896 0.90819 1.01909 0.90463 0.91374 0.89608 0.85722 0.85317 0.76803 0.88962 0.94947 0.93602 0.95576 0.93029 0.84462 0.91642 0.91386 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 9.98 36.00 0.36 0.01 16 2 C 0.07 0.50 7.08 -81.77 -0.58 -0.08 16 3 N -0.59 -4.23 6.05 -6.91 -0.04 -4.27 16 4 H 0.41 1.68 8.96 -40.82 -0.37 1.32 16 5 C 0.12 1.16 7.27 -83.95 -0.61 0.55 16 6 C -0.14 -1.21 10.00 -39.86 -0.40 -1.61 16 7 C -0.07 -0.66 9.46 -39.53 -0.37 -1.03 16 8 C -0.16 -2.06 5.87 -104.97 -0.62 -2.68 16 9 C 0.56 8.81 7.76 -12.42 -0.10 8.71 16 10 O -0.54 -10.41 15.90 5.30 0.08 -10.33 16 11 N -0.69 -10.02 5.51 -54.81 -0.30 -10.32 16 12 C 0.10 1.70 5.97 -67.93 -0.41 1.29 16 13 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 14 C -0.18 -3.41 6.96 -89.22 -0.62 -4.03 16 15 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.19 4.50 5.92 -0.29 0.00 4.50 16 17 N -0.60 -15.58 3.45 -165.71 -0.57 -16.15 16 18 C -0.22 -6.29 10.36 -15.06 -0.16 -6.45 16 19 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 20 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 21 N -0.92 -27.09 10.82 55.49 0.60 -26.49 16 22 Si 0.91 22.14 29.56 -169.99 -5.03 17.12 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.16 3.43 7.05 -2.41 -0.02 3.41 16 27 C -0.18 -3.34 7.06 -89.22 -0.63 -3.97 16 28 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 29 C 0.00 0.00 9.64 -38.86 -0.37 -0.37 16 30 C -0.11 -1.30 6.34 -105.16 -0.67 -1.96 16 31 C -0.16 -1.48 6.32 -102.69 -0.65 -2.13 16 32 C -0.08 -0.58 9.96 36.01 0.36 -0.22 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 0.26 7.66 -51.93 -0.40 -0.13 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 1.00 6.36 -52.49 -0.33 0.66 16 38 H 0.40 4.52 6.83 -40.82 -0.28 4.24 16 39 H 0.09 2.47 6.56 -51.93 -0.34 2.13 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -34.70 387.66 -11.66 -46.36 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.68 Total: 4.61 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -5.57 Total: -6.37 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.32 Total: -57.23 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.70 -11.66 -46.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962507911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.333 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds