Wall clock time and date at job start Tue Mar 31 2020 23:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36863 * 125.01798 * 2 1 4 4 H 0.96991 * 125.01128 * 0.03561 * 3 2 1 5 5 C 1.37404 * 109.98053 * 180.02562 * 3 2 1 6 6 C 1.39367 * 133.25292 * 179.97438 * 5 3 2 7 7 C 1.36307 * 120.24200 * 180.02562 * 6 5 3 8 8 C 1.40216 * 120.66951 * 359.97438 * 7 6 5 9 9 C 1.47649 * 119.97557 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99940 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99981 * 359.97438 * 9 8 7 12 12 C 1.46507 * 119.99981 * 180.02562 * 11 9 8 13 13 H 1.08994 * 115.51437 * 350.41185 * 12 11 9 14 14 C 1.53002 * 117.44095 * 204.99781 * 12 11 9 15 15 H 1.08996 * 119.53821 * 4.11969 * 14 12 11 16 16 C 1.54391 * 118.11825 * 159.21001 * 14 12 11 17 17 N 1.51828 * 102.86364 * 88.02456 * 16 14 12 18 18 C 1.36935 * 127.61098 * 140.54367 * 17 16 14 19 19 H 1.07997 * 120.00097 * 194.64742 * 18 17 16 20 20 C 1.38814 * 120.00240 * 14.65101 * 18 17 16 21 21 N 1.31625 * 119.99574 * 9.01090 * 20 18 17 22 22 Si 1.86792 * 120.00418 * 189.01569 * 20 18 17 23 23 H 1.48500 * 109.47692 * 89.99269 * 22 20 18 24 24 H 1.48503 * 109.47236 * 209.99912 * 22 20 18 25 25 H 1.48503 * 109.46878 * 329.99693 * 22 20 18 26 26 C 1.48144 * 104.55080 * 320.26633 * 17 16 14 27 27 C 1.53000 * 117.44388 * 135.75810 * 12 11 9 28 28 H 1.09001 * 119.53923 * 355.88430 * 27 12 11 29 29 C 1.39151 * 120.04836 * 0.02562 * 8 7 6 30 30 C 1.39267 * 119.39715 * 359.75864 * 29 8 7 31 31 C 1.34193 * 125.02367 * 180.02562 * 2 1 3 32 32 C 1.50701 * 126.53770 * 359.95011 * 31 2 1 33 33 H 1.09003 * 109.47708 * 269.97627 * 1 2 3 34 34 H 1.08996 * 109.47071 * 29.98227 * 1 2 3 35 35 H 1.09002 * 109.46967 * 149.97967 * 1 2 3 36 36 H 1.08000 * 119.87809 * 359.97438 * 6 5 3 37 37 H 1.08000 * 119.67013 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00352 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.40367 * 205.97245 * 16 14 12 40 40 H 1.08993 * 110.40737 * 328.40663 * 16 14 12 41 41 H 0.97003 * 119.99486 * 180.02562 * 21 20 18 42 42 H 1.09001 * 110.40980 * 281.07989 * 26 17 16 43 43 H 1.09000 * 110.40797 * 158.64975 * 26 17 16 44 44 H 1.08001 * 120.30234 * 180.02562 * 29 8 7 45 45 H 1.09000 * 109.47245 * 90.02229 * 32 31 2 46 46 H 1.09003 * 109.47261 * 210.01720 * 32 31 2 47 47 H 1.09004 * 109.47536 * 330.02273 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1209 0.0000 4 1 1.9611 2.0325 0.0005 5 6 3.6193 0.7644 -0.0006 6 6 4.8050 1.4969 -0.0013 7 6 6.0079 0.8560 -0.0023 8 6 6.0721 -0.5447 -0.0021 9 6 7.3834 -1.2232 -0.0037 10 8 7.4395 -2.4377 -0.0031 11 7 8.5182 -0.4961 -0.0060 12 6 9.8195 -1.1693 -0.0082 13 1 9.7911 -2.2465 0.1560 14 6 11.0123 -0.4001 0.5633 15 1 10.8544 0.5811 1.0108 16 6 12.2452 -1.2071 1.0243 17 7 13.0709 -1.3172 -0.2450 18 6 14.4318 -1.2261 -0.3673 19 1 14.8784 -1.0858 -1.3405 20 6 15.2373 -1.3140 0.7598 21 7 14.7144 -1.6604 1.9170 22 14 17.0633 -0.9407 0.6343 23 1 17.2918 0.5045 0.8885 24 1 17.8030 -1.7434 1.6411 25 1 17.5467 -1.2862 -0.7266 26 6 12.0759 -1.5516 -1.3173 27 6 10.8910 -0.6296 -0.9576 28 1 10.6429 0.1808 -1.6430 29 6 4.9007 -1.2958 -0.0014 30 6 3.6703 -0.6435 0.0042 31 6 2.2771 -1.0989 -0.0005 32 6 1.8005 -2.5286 -0.0001 33 1 -0.3634 -0.0004 1.0277 34 1 -0.3633 0.8901 -0.5135 35 1 -0.3633 -0.8898 -0.5142 36 1 4.7704 2.5764 -0.0019 37 1 6.9210 1.4328 -0.0032 38 1 8.4735 0.4728 -0.0069 39 1 12.7934 -0.6588 1.7905 40 1 11.9413 -2.1844 1.3989 41 1 15.2773 -1.7215 2.7046 42 1 11.7587 -2.5945 -1.3201 43 1 12.4905 -1.2770 -2.2872 44 1 4.9453 -2.3749 -0.0008 45 1 1.6852 -2.8735 -1.0276 46 1 2.5301 -3.1547 0.5135 47 1 0.8414 -2.5918 0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962507911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:07 Heat of formation + Delta-G solvation = 57.473851 kcal Electronic energy + Delta-G solvation = -27650.486705 eV Core-core repulsion = 23799.211187 eV Total energy + Delta-G solvation = -3851.275518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.42987 -41.12633 -39.78760 -37.74321 -36.01116 -34.37844 -34.21391 -32.38483 -31.71921 -31.11220 -28.98368 -28.87229 -27.57011 -26.78804 -24.85837 -23.28975 -22.60707 -21.95003 -21.45499 -20.80033 -20.16078 -18.86998 -18.75216 -18.38840 -17.69333 -16.72622 -16.64216 -16.11887 -16.00182 -15.76414 -15.41250 -15.20594 -14.91367 -14.75955 -14.61031 -14.08735 -13.81803 -13.80634 -13.74246 -13.65400 -13.55435 -13.30984 -13.23528 -12.92445 -12.89731 -12.70370 -12.56166 -12.34515 -12.14904 -12.01568 -11.84292 -11.79782 -11.63205 -11.13149 -10.84155 -10.69718 -10.59058 -9.77065 -9.18629 -8.92751 -8.57683 -7.89744 -5.25550 -0.11233 0.22691 1.47701 1.49713 1.58704 1.63869 1.80859 1.93262 2.11685 2.49856 2.78369 2.99429 3.30459 3.51330 3.60010 3.71772 3.79455 3.83085 3.91420 4.04735 4.13920 4.20524 4.26574 4.37593 4.40645 4.44237 4.51974 4.75479 4.77229 4.78883 4.82550 4.87163 4.90553 4.92386 4.99194 5.09158 5.14607 5.20018 5.27865 5.34847 5.38936 5.42392 5.45394 5.52709 5.63938 5.65188 5.81141 6.07003 6.13044 6.51543 6.65417 6.96296 7.18355 7.65973 8.46094 9.24810 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.001784 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.820657 B =15687.735377 C =16004.833841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.083 3.917 3 N -0.577 5.577 4 H 0.432 0.568 5 C 0.111 3.889 6 C -0.125 4.125 7 C -0.069 4.069 8 C -0.177 4.177 9 C 0.563 3.437 10 O -0.587 6.587 11 N -0.678 5.678 12 C 0.114 3.886 13 H 0.104 0.896 14 C -0.174 4.174 15 H 0.129 0.871 16 C 0.187 3.813 17 N -0.622 5.622 18 C -0.238 4.238 19 H 0.083 0.917 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.982 3.018 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.151 3.849 27 C -0.164 4.164 28 H 0.137 0.863 29 C -0.019 4.019 30 C -0.138 4.138 31 C -0.195 4.195 32 C -0.078 4.078 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.004 0.996 41 H 0.249 0.751 42 H 0.016 0.984 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.415 11.092 -4.550 35.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 N -0.181 5.181 4 H 0.272 0.728 5 C 0.001 3.999 6 C -0.145 4.145 7 C -0.089 4.089 8 C -0.181 4.181 9 C 0.353 3.647 10 O -0.468 6.468 11 N -0.327 5.327 12 C 0.006 3.994 13 H 0.122 0.878 14 C -0.195 4.195 15 H 0.146 0.854 16 C 0.062 3.938 17 N -0.347 5.347 18 C -0.367 4.367 19 H 0.101 0.899 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.810 3.190 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.025 3.975 27 C -0.185 4.185 28 H 0.155 0.845 29 C -0.039 4.039 30 C -0.143 4.143 31 C -0.201 4.201 32 C -0.135 4.135 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -33.237 10.354 -4.455 35.097 hybrid contribution 1.391 0.407 0.311 1.482 sum -31.847 10.761 -4.143 33.870 Atomic orbital electron populations 1.20609 0.84709 1.05132 1.04370 1.20636 0.94930 0.84660 1.02269 1.41690 1.03054 1.09288 1.64048 0.72774 1.18571 0.85998 0.93582 1.01702 1.19982 0.88347 1.00894 1.05310 1.20854 0.98990 0.91708 0.97359 1.19446 0.91166 0.94833 1.12661 1.18614 0.84750 0.86454 0.74836 1.90747 1.88102 1.15736 1.52259 1.45031 1.03324 1.10509 1.73878 1.21411 0.79070 0.96225 1.02650 0.87834 1.24289 0.95817 1.01749 0.97662 0.85365 1.21451 0.87753 0.95056 0.89527 1.46392 1.01619 1.83666 1.03068 1.19428 0.81034 1.41862 0.94359 0.89938 1.25741 1.02553 1.01680 0.95880 1.70095 1.35884 1.53766 1.00033 0.85025 0.79214 0.77386 0.77366 1.21010 1.22250 1.19265 1.21191 0.88526 0.95183 0.92564 1.24300 0.97507 1.03159 0.93546 0.84487 1.20606 0.90028 0.99636 0.93581 1.19271 0.93425 0.93178 1.08445 1.20424 0.89831 0.96534 1.13314 1.20157 1.01407 0.89827 1.02157 0.89160 0.89440 0.88768 0.82158 0.82790 0.74481 0.91866 0.97804 0.94148 0.96670 0.91725 0.86474 0.91418 0.92918 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 9.98 71.24 0.71 0.35 16 2 C 0.08 1.01 7.08 40.85 0.29 1.30 16 3 N -0.58 -6.48 6.05 -175.78 -1.06 -7.55 16 4 H 0.43 1.78 8.96 -92.71 -0.83 0.95 16 5 C 0.11 1.93 7.27 39.19 0.28 2.21 16 6 C -0.13 -1.82 10.00 22.09 0.22 -1.60 16 7 C -0.07 -1.22 9.46 22.30 0.21 -1.01 16 8 C -0.18 -4.51 5.87 -20.09 -0.12 -4.63 16 9 C 0.56 17.87 7.76 86.73 0.67 18.54 16 10 O -0.59 -23.99 15.90 -3.97 -0.06 -24.05 16 11 N -0.68 -18.80 5.51 -445.59 -2.46 -21.26 16 12 C 0.11 3.97 5.97 44.99 0.27 4.24 16 13 H 0.10 4.31 7.40 -2.39 -0.02 4.30 16 14 C -0.17 -6.58 6.96 -9.88 -0.07 -6.65 16 15 H 0.13 4.17 8.14 -2.39 -0.02 4.16 16 16 C 0.19 9.43 5.92 85.80 0.51 9.93 16 17 N -0.62 -33.00 3.45 -678.18 -2.34 -35.35 16 18 C -0.24 -13.57 10.36 84.03 0.87 -12.70 16 19 H 0.08 4.48 7.84 -2.91 -0.02 4.45 16 20 C -0.07 -3.75 5.42 84.86 0.46 -3.29 16 21 N -0.95 -58.02 10.82 21.65 0.23 -57.79 16 22 Si 0.98 46.04 29.56 68.60 2.03 48.07 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.15 6.54 7.05 86.53 0.61 7.15 16 27 C -0.16 -5.75 7.06 -9.89 -0.07 -5.82 16 28 H 0.14 3.94 8.14 -2.39 -0.02 3.93 16 29 C -0.02 -0.50 9.64 22.74 0.22 -0.28 16 30 C -0.14 -3.10 6.34 -20.21 -0.13 -3.23 16 31 C -0.19 -3.48 6.32 -18.61 -0.12 -3.59 16 32 C -0.08 -1.12 9.96 71.24 0.71 -0.41 16 33 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.09 0.27 7.66 -2.39 -0.02 0.25 16 36 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.15 1.81 6.36 -2.91 -0.02 1.79 16 38 H 0.42 8.28 6.83 -92.71 -0.63 7.65 16 39 H 0.06 3.54 6.56 -2.39 -0.02 3.52 16 40 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.12 3.41 7.64 -2.91 -0.02 3.39 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.79 7.69 -2.39 -0.02 0.77 16 Total: -1.00 -79.85 387.66 1.43 -78.42 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.45 Total: 18.99 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.53 Total: 0.51 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -5.63 Total: -121.94 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.85 1.43 -78.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962507911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.895 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds