Wall clock time and date at job start Tue Mar 31 2020 22:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30820 * 119.23000 * 2 1 4 4 C 1.33788 * 121.71773 * 180.02562 * 3 2 1 5 5 C 1.40540 * 120.82613 * 180.02562 * 4 3 2 6 6 C 1.36134 * 119.81101 * 179.97438 * 5 4 3 7 7 C 1.39346 * 121.09903 * 359.97438 * 6 5 4 8 8 C 1.36142 * 120.83548 * 0.02562 * 7 6 5 9 9 C 1.40551 * 119.61791 * 0.02562 * 8 7 6 10 10 C 1.40499 * 121.22365 * 180.30534 * 9 8 7 11 11 C 1.39041 * 117.95872 * 180.21029 * 10 9 8 12 12 C 1.47765 * 120.26466 * 179.74136 * 11 10 9 13 13 O 1.21561 * 119.99921 * 173.84908 * 12 11 10 14 14 N 1.34778 * 119.99593 * 353.84842 * 12 11 10 15 15 C 1.46500 * 119.99571 * 179.97438 * 14 12 11 16 16 H 1.09006 * 109.47120 * 35.00079 * 15 14 12 17 17 C 1.52997 * 109.47343 * 275.00162 * 15 14 12 18 18 C 1.53000 * 109.47350 * 154.99769 * 15 14 12 19 19 C 1.53498 * 114.20702 * 294.87423 * 18 15 14 20 20 N 1.47070 * 87.98302 * 220.34322 * 19 18 15 21 21 C 1.36940 * 136.05429 * 207.08528 * 20 19 18 22 22 H 1.07995 * 120.00197 * 6.64688 * 21 20 19 23 23 C 1.38813 * 119.99685 * 186.64110 * 21 20 19 24 24 N 1.31617 * 120.00060 * 6.46178 * 23 21 20 25 25 Si 1.86807 * 119.99801 * 186.45609 * 23 21 20 26 26 H 1.48497 * 109.46797 * 265.01897 * 25 23 21 27 27 H 1.48494 * 109.47027 * 25.02253 * 25 23 21 28 28 H 1.48492 * 109.46801 * 145.02111 * 25 23 21 29 29 C 1.47061 * 87.88775 * 27.33654 * 20 19 18 30 30 H 1.08999 * 109.47351 * 263.13769 * 1 2 3 31 31 H 1.09002 * 109.46426 * 23.13492 * 1 2 3 32 32 H 1.09004 * 109.47292 * 143.13143 * 1 2 3 33 33 H 1.07994 * 120.09013 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.45032 * 180.02562 * 6 5 4 35 35 H 1.07988 * 119.58270 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.19228 * 180.02562 * 8 7 6 37 37 H 1.07995 * 121.01324 * 359.97193 * 10 9 8 38 38 H 0.96991 * 120.00485 * 359.97438 * 14 12 11 39 39 H 1.08999 * 109.47460 * 64.84586 * 17 15 14 40 40 H 1.09010 * 109.47365 * 184.84954 * 17 15 14 41 41 H 1.09002 * 109.47120 * 304.84334 * 17 15 14 42 42 H 1.08997 * 113.41204 * 68.06874 * 18 15 14 43 43 H 1.08990 * 113.47146 * 105.56094 * 19 18 15 44 44 H 1.09006 * 113.51689 * 335.12200 * 19 18 15 45 45 H 0.97008 * 119.99841 * 179.97438 * 24 23 21 46 46 H 1.09008 * 113.46629 * 87.43888 * 29 20 19 47 47 H 1.08997 * 113.47097 * 217.88104 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4825 1.1997 -0.0005 5 6 4.1496 2.4367 0.0000 6 6 5.5105 2.4717 0.0000 7 6 6.2607 1.2974 0.0000 8 6 5.6512 0.0800 -0.0005 9 6 4.2477 0.0058 -0.0016 10 6 3.5838 -1.2324 0.0042 11 6 2.1934 -1.2266 -0.0018 12 6 1.4433 -2.4998 -0.0018 13 8 0.2325 -2.4919 0.1058 14 7 2.1018 -3.6697 -0.1211 15 6 1.3582 -4.9320 -0.1206 16 1 0.4001 -4.7895 -0.6207 17 6 1.1186 -5.3822 1.3218 18 6 2.1658 -6.0000 -0.8608 19 6 2.3631 -5.7160 -2.3563 20 7 2.1372 -7.1478 -2.6049 21 6 2.5142 -8.0543 -3.5596 22 1 3.2223 -7.7705 -4.3241 23 6 1.9863 -9.3380 -3.5447 24 7 1.0308 -9.6468 -2.6938 25 14 2.6320 -10.6273 -4.7323 26 1 1.7665 -10.6669 -5.9384 27 1 4.0204 -10.2825 -5.1304 28 1 2.6221 -11.9574 -4.0722 29 6 1.3230 -7.1762 -1.3806 30 1 -0.3634 -0.1228 1.0203 31 1 -0.3632 0.9451 -0.4038 32 1 -0.3634 -0.8222 -0.6166 33 1 3.5842 3.3568 0.0013 34 1 6.0171 3.4254 0.0009 35 1 7.3391 1.3537 -0.0004 36 1 6.2428 -0.8236 -0.0001 37 1 4.1366 -2.1602 0.0093 38 1 3.0678 -3.6760 -0.2074 39 1 0.4713 -4.6633 1.8241 40 1 0.6419 -6.3626 1.3221 41 1 2.0719 -5.4417 1.8470 42 1 3.0758 -6.2946 -0.3381 43 1 3.3713 -5.3858 -2.6062 44 1 1.5918 -5.0745 -2.7827 45 1 0.6616 -10.5438 -2.6836 46 1 0.2770 -6.9197 -1.5488 47 1 1.4452 -8.0900 -0.7991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969782688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:35 Heat of formation + Delta-G solvation = 76.337398 kcal Electronic energy + Delta-G solvation = -28472.612146 eV Core-core repulsion = 24622.154613 eV Total energy + Delta-G solvation = -3850.457533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33666 -39.80778 -38.36902 -37.27124 -35.07372 -33.94836 -32.24791 -32.05002 -31.13769 -29.84032 -27.94552 -27.56780 -25.25160 -24.52512 -24.02547 -22.88470 -22.46248 -21.68796 -20.54458 -19.53326 -18.48530 -17.71286 -17.02860 -16.78597 -15.93127 -15.88431 -15.39804 -14.87717 -14.86384 -14.78951 -14.35493 -14.17011 -13.99617 -13.74270 -13.58254 -13.27707 -13.14492 -13.01601 -12.40154 -12.25526 -12.14014 -12.08204 -11.78621 -11.64969 -11.59571 -11.38198 -11.28284 -10.95727 -10.83483 -10.73492 -10.41289 -10.10612 -10.00618 -9.88283 -9.51911 -9.24395 -9.10716 -8.84574 -8.79867 -8.59126 -6.91940 -5.82197 -3.13198 -0.10616 0.35736 1.53204 2.32965 3.05716 3.11983 3.36653 3.41564 3.43908 3.79375 3.91338 4.18095 4.28450 4.37153 4.42168 4.44566 4.74549 4.78321 4.89404 5.06109 5.12318 5.16213 5.30139 5.35060 5.39938 5.50064 5.55275 5.60586 5.62403 5.70588 5.75940 5.79686 5.91546 5.95964 6.01537 6.04450 6.08968 6.20932 6.28668 6.33808 6.39424 6.49160 6.55059 6.60728 6.73393 7.13963 7.29444 7.47551 7.49630 7.66201 7.93035 8.18711 8.99772 9.66287 10.60635 11.36595 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.002377 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.166344 B =11775.027296 C =12834.427800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 N -0.484 5.484 4 C 0.150 3.850 5 C -0.102 4.102 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.084 4.084 9 C -0.119 4.119 10 C -0.014 4.014 11 C -0.183 4.183 12 C 0.561 3.439 13 O -0.527 6.527 14 N -0.712 5.712 15 C 0.155 3.845 16 H 0.091 0.909 17 C -0.158 4.158 18 C -0.156 4.156 19 C 0.124 3.876 20 N -0.610 5.610 21 C -0.220 4.220 22 H 0.081 0.919 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.289 1.289 29 C 0.176 3.824 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.031 0.969 45 H 0.254 0.746 46 H 0.031 0.969 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 22.487 9.744 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.061 3.939 3 N -0.193 5.193 4 C 0.028 3.972 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.144 4.144 8 C -0.103 4.103 9 C -0.121 4.121 10 C -0.040 4.040 11 C -0.188 4.188 12 C 0.347 3.653 13 O -0.405 6.405 14 N -0.362 5.362 15 C 0.051 3.949 16 H 0.109 0.891 17 C -0.216 4.216 18 C -0.176 4.176 19 C -0.002 4.002 20 N -0.335 5.335 21 C -0.348 4.348 22 H 0.099 0.901 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.215 1.215 29 C 0.050 3.950 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.231 0.769 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.085 22.963 9.630 25.888 hybrid contribution 1.314 -1.492 -0.759 2.129 sum 8.399 21.470 8.870 24.702 Atomic orbital electron populations 1.21133 0.87192 1.04075 1.04472 1.21626 0.97742 0.86191 0.88389 1.67922 1.08168 1.28173 1.15026 1.19026 0.89210 0.93020 0.95951 1.20825 0.94218 0.96420 1.00594 1.20984 0.93695 0.98865 0.97552 1.20932 1.00490 0.92273 1.00659 1.21078 0.92448 0.98810 0.97948 1.18775 0.94986 0.93614 1.04774 1.22027 0.93275 0.97737 0.90992 1.20904 0.94046 0.95578 1.08274 1.17910 0.87234 0.83187 0.76952 1.90736 1.13310 1.86862 1.49599 1.46077 1.10780 1.05911 1.73440 1.21075 0.96127 0.81334 0.96406 0.89081 1.22115 1.01604 1.02006 0.95918 1.23728 1.00607 0.97564 0.95696 1.22370 0.97906 0.88601 0.91363 1.45666 1.57820 1.03038 1.26972 1.18936 1.19732 0.90318 1.05794 0.90139 1.24838 0.98045 0.97941 0.99576 1.69844 1.27964 1.19807 1.38888 0.86100 0.78314 0.81208 0.80138 1.21575 1.20524 1.21545 1.21940 0.92652 0.93662 0.86775 0.89752 0.91280 0.87460 0.84582 0.85176 0.85313 0.84866 0.83687 0.76934 0.92614 0.90926 0.92811 0.88951 0.94563 0.95141 0.93560 0.95106 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.82 36.01 0.32 -1.00 16 2 C 0.21 2.72 6.82 -82.15 -0.56 2.16 16 3 N -0.48 -6.21 10.20 -6.93 -0.07 -6.28 16 4 C 0.15 1.71 6.61 -84.78 -0.56 1.15 16 5 C -0.10 -0.92 9.97 -39.47 -0.39 -1.31 16 6 C -0.09 -0.62 9.94 -39.93 -0.40 -1.02 16 7 C -0.13 -0.83 9.96 -39.92 -0.40 -1.23 16 8 C -0.08 -0.64 9.77 -39.46 -0.39 -1.03 16 9 C -0.12 -1.21 5.74 -106.81 -0.61 -1.82 16 10 C -0.01 -0.14 9.38 -38.43 -0.36 -0.50 16 11 C -0.18 -2.19 5.89 -104.83 -0.62 -2.81 16 12 C 0.56 7.51 7.66 -12.37 -0.09 7.41 16 13 O -0.53 -8.36 12.96 5.31 0.07 -8.29 16 14 N -0.71 -8.72 4.91 -54.77 -0.27 -8.99 16 15 C 0.15 2.24 2.34 -67.93 -0.16 2.08 16 16 H 0.09 1.53 7.42 -51.93 -0.39 1.14 16 17 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 18 C -0.16 -2.65 3.52 -89.97 -0.32 -2.97 16 19 C 0.12 2.45 8.13 -8.50 -0.07 2.39 16 20 N -0.61 -15.46 3.76 -184.59 -0.69 -16.15 16 21 C -0.22 -6.16 10.73 -15.06 -0.16 -6.32 16 22 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -27.19 11.81 55.49 0.66 -26.53 16 25 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 C 0.18 3.99 6.79 -8.37 -0.06 3.93 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.40 5.81 -51.93 -0.30 1.10 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.15 0.99 6.53 -52.49 -0.34 0.65 16 38 H 0.40 3.89 6.71 -40.82 -0.27 3.62 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.03 0.73 8.00 -51.92 -0.42 0.32 16 47 H 0.06 1.55 7.58 -51.93 -0.39 1.15 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -33.57 387.10 -10.80 -44.37 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.73 Total: 1.99 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.57 Total: -2.90 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.38 Total: -57.96 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.57 -10.80 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969782688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.710 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds