Wall clock time and date at job start Tue Mar 31 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30820 * 119.23000 * 2 1 4 4 C 1.33788 * 121.71773 * 180.02562 * 3 2 1 5 5 C 1.40540 * 120.82613 * 180.02562 * 4 3 2 6 6 C 1.36134 * 119.81101 * 179.97438 * 5 4 3 7 7 C 1.39346 * 121.09903 * 359.97438 * 6 5 4 8 8 C 1.36142 * 120.83548 * 0.02562 * 7 6 5 9 9 C 1.40551 * 119.61791 * 0.02562 * 8 7 6 10 10 C 1.40499 * 121.22365 * 180.30534 * 9 8 7 11 11 C 1.39041 * 117.95872 * 180.21029 * 10 9 8 12 12 C 1.47765 * 120.26466 * 179.74136 * 11 10 9 13 13 O 1.21561 * 119.99921 * 173.84908 * 12 11 10 14 14 N 1.34778 * 119.99593 * 353.84842 * 12 11 10 15 15 C 1.46500 * 119.99571 * 179.97438 * 14 12 11 16 16 H 1.09006 * 109.47120 * 35.00079 * 15 14 12 17 17 C 1.52997 * 109.47343 * 275.00162 * 15 14 12 18 18 C 1.53000 * 109.47350 * 154.99769 * 15 14 12 19 19 C 1.53498 * 114.20702 * 294.87423 * 18 15 14 20 20 N 1.47070 * 87.98302 * 220.34322 * 19 18 15 21 21 C 1.36940 * 136.05429 * 207.08528 * 20 19 18 22 22 H 1.07995 * 120.00197 * 6.64688 * 21 20 19 23 23 C 1.38813 * 119.99685 * 186.64110 * 21 20 19 24 24 N 1.31617 * 120.00060 * 6.46178 * 23 21 20 25 25 Si 1.86807 * 119.99801 * 186.45609 * 23 21 20 26 26 H 1.48497 * 109.46797 * 265.01897 * 25 23 21 27 27 H 1.48494 * 109.47027 * 25.02253 * 25 23 21 28 28 H 1.48492 * 109.46801 * 145.02111 * 25 23 21 29 29 C 1.47061 * 87.88775 * 27.33654 * 20 19 18 30 30 H 1.08999 * 109.47351 * 263.13769 * 1 2 3 31 31 H 1.09002 * 109.46426 * 23.13492 * 1 2 3 32 32 H 1.09004 * 109.47292 * 143.13143 * 1 2 3 33 33 H 1.07994 * 120.09013 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.45032 * 180.02562 * 6 5 4 35 35 H 1.07988 * 119.58270 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.19228 * 180.02562 * 8 7 6 37 37 H 1.07995 * 121.01324 * 359.97193 * 10 9 8 38 38 H 0.96991 * 120.00485 * 359.97438 * 14 12 11 39 39 H 1.08999 * 109.47460 * 64.84586 * 17 15 14 40 40 H 1.09010 * 109.47365 * 184.84954 * 17 15 14 41 41 H 1.09002 * 109.47120 * 304.84334 * 17 15 14 42 42 H 1.08997 * 113.41204 * 68.06874 * 18 15 14 43 43 H 1.08990 * 113.47146 * 105.56094 * 19 18 15 44 44 H 1.09006 * 113.51689 * 335.12200 * 19 18 15 45 45 H 0.97008 * 119.99841 * 179.97438 * 24 23 21 46 46 H 1.09008 * 113.46629 * 87.43888 * 29 20 19 47 47 H 1.08997 * 113.47097 * 217.88104 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4825 1.1997 -0.0005 5 6 4.1496 2.4367 0.0000 6 6 5.5105 2.4717 0.0000 7 6 6.2607 1.2974 0.0000 8 6 5.6512 0.0800 -0.0005 9 6 4.2477 0.0058 -0.0016 10 6 3.5838 -1.2324 0.0042 11 6 2.1934 -1.2266 -0.0018 12 6 1.4433 -2.4998 -0.0018 13 8 0.2325 -2.4919 0.1058 14 7 2.1018 -3.6697 -0.1211 15 6 1.3582 -4.9320 -0.1206 16 1 0.4001 -4.7895 -0.6207 17 6 1.1186 -5.3822 1.3218 18 6 2.1658 -6.0000 -0.8608 19 6 2.3631 -5.7160 -2.3563 20 7 2.1372 -7.1478 -2.6049 21 6 2.5142 -8.0543 -3.5596 22 1 3.2223 -7.7705 -4.3241 23 6 1.9863 -9.3380 -3.5447 24 7 1.0308 -9.6468 -2.6938 25 14 2.6320 -10.6273 -4.7323 26 1 1.7665 -10.6669 -5.9384 27 1 4.0204 -10.2825 -5.1304 28 1 2.6221 -11.9574 -4.0722 29 6 1.3230 -7.1762 -1.3806 30 1 -0.3634 -0.1228 1.0203 31 1 -0.3632 0.9451 -0.4038 32 1 -0.3634 -0.8222 -0.6166 33 1 3.5842 3.3568 0.0013 34 1 6.0171 3.4254 0.0009 35 1 7.3391 1.3537 -0.0004 36 1 6.2428 -0.8236 -0.0001 37 1 4.1366 -2.1602 0.0093 38 1 3.0678 -3.6760 -0.2074 39 1 0.4713 -4.6633 1.8241 40 1 0.6419 -6.3626 1.3221 41 1 2.0719 -5.4417 1.8470 42 1 3.0758 -6.2946 -0.3381 43 1 3.3713 -5.3858 -2.6062 44 1 1.5918 -5.0745 -2.7827 45 1 0.6616 -10.5438 -2.6836 46 1 0.2770 -6.9197 -1.5488 47 1 1.4452 -8.0900 -0.7991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969782688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:34 Heat of formation + Delta-G solvation = 55.726865 kcal Electronic energy + Delta-G solvation = -28473.505886 eV Core-core repulsion = 24622.154613 eV Total energy + Delta-G solvation = -3851.351273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14147 -40.91090 -39.80939 -38.06229 -36.32532 -34.82492 -34.12355 -32.82857 -32.19696 -30.74744 -29.38201 -28.74537 -26.51610 -25.94006 -25.51814 -23.67210 -23.30341 -22.84555 -21.67085 -21.02398 -19.39264 -18.81188 -18.46707 -17.85561 -17.06840 -16.86252 -16.64646 -16.32652 -15.90613 -15.68874 -15.47989 -15.28547 -15.26326 -14.79189 -14.68262 -14.33997 -14.12506 -13.96310 -13.91392 -13.41378 -13.25135 -13.15814 -13.05168 -12.97556 -12.70256 -12.66938 -12.40412 -12.34749 -12.32229 -12.04127 -11.85360 -11.59674 -11.56773 -11.08229 -10.94088 -10.86212 -10.45025 -10.12128 -9.69356 -9.24688 -8.94807 -7.94388 -5.26706 -0.81380 -0.39373 0.85354 1.45532 1.47186 1.54275 1.56728 2.02017 2.23101 2.46489 3.05344 3.14952 3.29049 3.41801 3.44485 3.53355 3.61555 3.70308 3.82993 3.99249 4.09838 4.23898 4.28116 4.33768 4.41215 4.44597 4.56798 4.59954 4.67790 4.75812 4.78212 4.82641 4.86456 4.88387 4.93842 4.96954 5.06509 5.09772 5.21293 5.26891 5.32287 5.37858 5.46498 5.49341 5.50854 5.55743 5.63378 5.88394 5.90253 6.51499 6.84364 6.88826 7.19051 7.57899 8.59297 9.24765 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.002377 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.166344 B =11775.027296 C =12834.427800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.194 3.806 3 N -0.505 5.505 4 C 0.124 3.876 5 C -0.127 4.127 6 C -0.076 4.076 7 C -0.122 4.122 8 C -0.086 4.086 9 C -0.135 4.135 10 C 0.003 3.997 11 C -0.204 4.204 12 C 0.564 3.436 13 O -0.559 6.559 14 N -0.701 5.701 15 C 0.167 3.833 16 H 0.065 0.935 17 C -0.152 4.152 18 C -0.112 4.112 19 C 0.125 3.875 20 N -0.642 5.642 21 C -0.232 4.232 22 H 0.086 0.914 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.980 3.020 26 H -0.289 1.289 27 H -0.264 1.264 28 H -0.292 1.292 29 C 0.171 3.829 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.412 0.588 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.249 0.751 46 H 0.011 0.989 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 23.762 10.012 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.041 3.959 3 N -0.215 5.215 4 C 0.002 3.998 5 C -0.145 4.145 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.104 4.104 9 C -0.137 4.137 10 C -0.023 4.023 11 C -0.210 4.210 12 C 0.352 3.648 13 O -0.439 6.439 14 N -0.352 5.352 15 C 0.062 3.938 16 H 0.083 0.917 17 C -0.210 4.210 18 C -0.132 4.132 19 C 0.000 4.000 20 N -0.368 5.368 21 C -0.360 4.360 22 H 0.104 0.896 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.808 3.192 26 H -0.216 1.216 27 H -0.188 1.188 28 H -0.219 1.219 29 C 0.044 3.956 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.195 0.805 38 H 0.249 0.751 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.028 0.972 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.089 24.283 9.898 28.472 hybrid contribution 0.206 -1.706 -0.851 1.917 sum 11.295 22.577 9.048 26.818 Atomic orbital electron populations 1.21000 0.87537 1.03569 1.04025 1.21687 0.97911 0.86840 0.89497 1.67879 1.09421 1.28285 1.15921 1.19480 0.88971 0.94700 0.96607 1.21013 0.95426 0.95822 1.02257 1.21413 0.92806 1.00656 0.94660 1.21396 1.02203 0.91615 0.98782 1.21446 0.91303 1.00607 0.97055 1.19035 0.96336 0.93111 1.05204 1.22373 0.92338 0.99094 0.88527 1.20698 0.95013 0.94232 1.11009 1.18107 0.86895 0.83719 0.76125 1.90727 1.14830 1.87303 1.51028 1.45803 1.11389 1.04698 1.73316 1.20718 0.94713 0.81644 0.96760 0.91678 1.22049 1.02717 1.01393 0.94856 1.23349 0.99943 0.95255 0.94659 1.22497 0.98865 0.85766 0.92902 1.46087 1.58140 1.05383 1.27200 1.19364 1.19389 0.91147 1.06073 0.89579 1.25712 0.98663 1.00118 1.01637 1.70029 1.29543 1.19838 1.40855 0.85036 0.78315 0.78131 0.77697 1.21646 1.18815 1.21894 1.21892 0.92397 0.94802 0.86480 0.89944 0.90782 0.89080 0.84367 0.82122 0.82026 0.82033 0.80476 0.75103 0.92808 0.91702 0.90559 0.86833 0.92182 0.95595 0.94177 0.97161 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.63 8.82 71.24 0.63 -2.00 16 2 C 0.19 5.08 6.82 43.28 0.30 5.38 16 3 N -0.51 -13.24 10.20 -175.84 -1.79 -15.03 16 4 C 0.12 2.73 6.61 40.29 0.27 2.99 16 5 C -0.13 -2.09 9.97 22.34 0.22 -1.87 16 6 C -0.08 -0.77 9.94 22.05 0.22 -0.55 16 7 C -0.12 -1.06 9.96 22.05 0.22 -0.84 16 8 C -0.09 -0.96 9.77 22.35 0.22 -0.74 16 9 C -0.13 -2.42 5.74 -21.28 -0.12 -2.54 16 10 C 0.00 0.05 9.38 23.01 0.22 0.26 16 11 C -0.20 -4.80 5.89 -20.00 -0.12 -4.92 16 12 C 0.56 14.91 7.66 86.76 0.66 15.57 16 13 O -0.56 -18.31 12.96 -3.91 -0.05 -18.36 16 14 N -0.70 -15.96 4.91 -445.48 -2.19 -18.15 16 15 C 0.17 4.71 2.34 44.99 0.11 4.81 16 16 H 0.07 2.23 7.42 -2.38 -0.02 2.21 16 17 C -0.15 -3.83 9.48 71.98 0.68 -3.15 16 18 C -0.11 -3.69 3.52 -10.37 -0.04 -3.72 16 19 C 0.12 4.79 8.13 83.18 0.68 5.47 16 20 N -0.64 -32.70 3.76 -737.91 -2.78 -35.48 16 21 C -0.23 -12.96 10.73 84.03 0.90 -12.06 16 22 H 0.09 4.57 7.84 -2.91 -0.02 4.55 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 24 N -0.95 -58.05 11.81 21.65 0.26 -57.79 16 25 Si 0.98 45.48 29.56 68.60 2.03 47.50 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 29 C 0.17 7.92 6.79 83.27 0.57 8.49 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 2.58 5.81 -2.38 -0.01 2.56 16 33 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 35 H 0.16 0.38 8.06 -2.92 -0.02 0.36 16 36 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.18 1.70 6.53 -2.91 -0.02 1.68 16 38 H 0.41 6.73 6.71 -92.71 -0.62 6.10 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.03 1.05 8.11 -2.38 -0.02 1.03 16 45 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 46 H 0.01 0.53 8.00 -2.38 -0.02 0.51 16 47 H 0.03 1.77 7.58 -2.39 -0.02 1.75 16 Total: -1.00 -76.45 387.10 1.92 -74.54 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.37 Total: 15.62 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.07 Total: 7.15 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -6.50 Total: -126.46 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.45 1.92 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969782688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.263 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds