Wall clock time and date at job start Tue Mar 31 2020 22:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30815 * 119.22926 * 2 1 4 4 C 1.33793 * 121.72105 * 179.97438 * 3 2 1 5 5 C 1.40539 * 120.82467 * 179.97438 * 4 3 2 6 6 C 1.36124 * 119.81351 * 180.02562 * 5 4 3 7 7 C 1.39350 * 121.09633 * 0.02562 * 6 5 4 8 8 C 1.36143 * 120.83524 * 0.02562 * 7 6 5 9 9 C 1.40545 * 119.61895 * 359.96009 * 8 7 6 10 10 C 1.40492 * 121.22891 * 180.02562 * 9 8 7 11 11 C 1.39048 * 117.96528 * 180.27452 * 10 9 8 12 12 C 1.47752 * 120.26877 * 179.73153 * 11 10 9 13 13 O 1.21564 * 119.99971 * 186.32716 * 12 11 10 14 14 N 1.34779 * 119.99987 * 6.32271 * 12 11 10 15 15 C 1.46505 * 119.99888 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.46952 * 325.00192 * 15 14 12 17 17 C 1.53001 * 109.46886 * 85.00349 * 15 14 12 18 18 C 1.52997 * 109.47152 * 204.99897 * 15 14 12 19 19 C 1.53939 * 113.74269 * 162.15342 * 18 15 14 20 20 N 1.47813 * 86.04151 * 222.08515 * 19 18 15 21 21 C 1.36930 * 134.45861 * 204.64697 * 20 19 18 22 22 H 1.08002 * 120.00032 * 179.86597 * 21 20 19 23 23 C 1.38813 * 120.00219 * 359.86225 * 21 20 19 24 24 N 1.31611 * 119.99602 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47079 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46800 * 120.00327 * 25 23 21 28 28 H 1.48493 * 109.47379 * 240.00329 * 25 23 21 29 29 C 1.47588 * 91.04708 * 24.55059 * 20 19 18 30 30 H 1.09004 * 109.46500 * 96.72108 * 1 2 3 31 31 H 1.08998 * 109.47260 * 216.71525 * 1 2 3 32 32 H 1.08997 * 109.47117 * 336.72121 * 1 2 3 33 33 H 1.08001 * 120.09245 * 0.05097 * 5 4 3 34 34 H 1.07997 * 119.45408 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.58509 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.19205 * 180.02562 * 8 7 6 37 37 H 1.08004 * 121.01802 * 359.97438 * 10 9 8 38 38 H 0.96996 * 120.00142 * 0.02562 * 14 12 11 39 39 H 1.08997 * 109.47379 * 56.58896 * 17 15 14 40 40 H 1.09002 * 109.47291 * 176.59026 * 17 15 14 41 41 H 1.09001 * 109.47058 * 296.58619 * 17 15 14 42 42 H 1.09002 * 112.94786 * 293.74991 * 18 15 14 43 43 H 1.08998 * 113.76944 * 336.35542 * 19 18 15 44 44 H 1.09003 * 113.76864 * 107.75009 * 19 18 15 45 45 H 0.97006 * 119.99726 * 180.02562 * 24 23 21 46 46 H 1.09003 * 113.76754 * 221.15730 * 29 20 19 47 47 H 1.08998 * 113.87068 * 89.76768 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 0.0005 5 6 4.1494 2.4368 0.0000 6 6 5.5102 2.4720 0.0000 7 6 6.2605 1.2977 0.0000 8 6 5.6512 0.0802 -0.0005 9 6 4.2477 0.0059 -0.0002 10 6 3.5839 -1.2323 -0.0002 11 6 2.1934 -1.2266 -0.0058 12 6 1.4435 -2.4997 -0.0120 13 8 0.2339 -2.4920 -0.1329 14 7 2.1006 -3.6695 0.1162 15 6 1.3570 -4.9318 0.1095 16 1 0.3936 -4.7886 0.5987 17 6 1.1333 -5.3842 -1.3349 18 6 2.1566 -5.9987 0.8599 19 6 1.3156 -7.2131 1.2932 20 7 2.0533 -7.1384 2.5719 21 6 2.3607 -8.0397 3.5558 22 1 2.9317 -7.7254 4.4169 23 6 1.9385 -9.3576 3.4465 24 7 1.2431 -9.7408 2.3968 25 14 2.3586 -10.5873 4.7884 26 1 3.1429 -9.9104 5.8522 27 1 1.1056 -11.1334 5.3691 28 1 3.1606 -11.6956 4.2108 29 6 2.3272 -5.7035 2.3612 30 1 -0.3632 -0.1203 -1.0207 31 1 -0.3634 -0.8238 0.6144 32 1 -0.3633 0.9440 0.4061 33 1 3.5839 3.3569 -0.0001 34 1 6.0168 3.4258 0.0000 35 1 7.3391 1.3541 -0.0004 36 1 6.2429 -0.8232 -0.0001 37 1 4.1366 -2.1601 -0.0009 38 1 3.0657 -3.6756 0.2130 39 1 2.0944 -5.4689 -1.8421 40 1 0.6337 -6.3529 -1.3390 41 1 0.5125 -4.6530 -1.8526 42 1 3.0860 -6.2655 0.3568 43 1 0.2510 -6.9992 1.3869 44 1 1.5203 -8.1166 0.7188 45 1 0.9477 -10.6616 2.3206 46 1 3.3381 -5.4041 2.6379 47 1 1.5615 -5.0438 2.7691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969782690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:38 Heat of formation + Delta-G solvation = 52.831720 kcal Electronic energy + Delta-G solvation = -28488.676161 eV Core-core repulsion = 24637.199345 eV Total energy + Delta-G solvation = -3851.476816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13937 -40.86174 -39.67345 -38.05420 -36.29405 -34.82085 -34.07078 -32.83038 -32.17844 -30.74425 -29.31803 -28.74766 -26.64032 -25.95658 -25.46211 -23.66758 -23.29180 -22.83027 -21.67004 -20.92277 -19.37243 -18.82026 -18.46462 -17.85239 -17.10919 -16.84002 -16.65191 -16.32175 -15.87465 -15.67661 -15.48161 -15.27339 -15.25552 -14.78267 -14.66261 -14.33982 -14.07475 -13.96216 -13.90407 -13.37183 -13.28279 -13.16768 -13.05977 -12.93049 -12.70323 -12.66719 -12.40444 -12.32578 -12.30995 -11.96631 -11.79549 -11.59371 -11.54368 -11.22263 -10.97573 -10.87606 -10.45599 -10.11124 -9.69346 -9.24762 -8.91654 -7.90735 -5.23868 -0.81418 -0.39429 0.85347 1.45442 1.46632 1.54259 1.56596 2.02913 2.23037 2.47171 3.05278 3.14920 3.29863 3.39046 3.45049 3.52902 3.61977 3.74078 3.83404 3.98534 4.09770 4.23837 4.28924 4.33719 4.41404 4.47084 4.58699 4.60122 4.67790 4.75769 4.77883 4.82924 4.87079 4.88332 4.93997 4.97845 5.06493 5.10064 5.25753 5.27118 5.33421 5.37814 5.46627 5.50382 5.54552 5.56411 5.66371 5.88330 5.94669 6.51559 6.84272 6.92576 7.19051 7.61003 8.56649 9.26445 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016218 B = 0.002371 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.110094 B =11807.170709 C =12793.892788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.194 3.806 3 N -0.505 5.505 4 C 0.124 3.876 5 C -0.126 4.126 6 C -0.076 4.076 7 C -0.122 4.122 8 C -0.086 4.086 9 C -0.135 4.135 10 C 0.003 3.997 11 C -0.204 4.204 12 C 0.564 3.436 13 O -0.559 6.559 14 N -0.701 5.701 15 C 0.164 3.836 16 H 0.065 0.935 17 C -0.152 4.152 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.644 5.644 21 C -0.234 4.234 22 H 0.083 0.917 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.265 1.265 27 H -0.295 1.295 28 H -0.289 1.289 29 C 0.126 3.874 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.411 0.589 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.108 0.892 43 H 0.011 0.989 44 H 0.047 0.953 45 H 0.249 0.751 46 H 0.062 0.938 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 24.114 -9.227 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.041 3.959 3 N -0.215 5.215 4 C 0.002 3.998 5 C -0.145 4.145 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.104 4.104 9 C -0.137 4.137 10 C -0.024 4.024 11 C -0.209 4.209 12 C 0.351 3.649 13 O -0.439 6.439 14 N -0.352 5.352 15 C 0.059 3.941 16 H 0.083 0.917 17 C -0.210 4.210 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.190 1.190 27 H -0.222 1.222 28 H -0.216 1.216 29 C 0.001 3.999 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.249 0.751 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.126 0.874 43 H 0.029 0.971 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.567 24.656 -9.135 28.338 hybrid contribution 0.213 -1.726 0.867 1.943 sum 10.780 22.930 -8.269 26.652 Atomic orbital electron populations 1.20984 0.87529 1.03537 1.03995 1.21685 0.97910 0.86837 0.89506 1.67877 1.09420 1.28281 1.15914 1.19479 0.88969 0.94697 0.96610 1.21011 0.95426 0.95821 1.02248 1.21413 0.92808 1.00654 0.94661 1.21400 1.02203 0.91614 0.98772 1.21444 0.91308 1.00604 0.97070 1.19030 0.96334 0.93109 1.05201 1.22373 0.92347 0.99089 0.88543 1.20701 0.95009 0.94239 1.10994 1.18105 0.86876 0.83717 0.76159 1.90731 1.14898 1.87326 1.50949 1.45815 1.11506 1.04736 1.73164 1.20797 0.94887 0.81749 0.96691 0.91661 1.22048 1.02713 1.01353 0.94927 1.23456 0.99930 0.94817 0.94583 1.22136 0.92690 0.94924 0.85794 1.46433 1.62499 1.05505 1.22620 1.19454 1.27865 0.89527 0.99374 0.89942 1.25624 1.00913 0.99046 1.00553 1.69999 1.42941 1.16702 1.30573 0.85024 0.76999 0.78827 0.78564 1.18964 1.22248 1.21608 1.22692 0.98763 0.85388 0.93026 0.89963 0.89154 0.90755 0.84357 0.82116 0.82026 0.82050 0.80505 0.75136 0.90676 0.91738 0.92829 0.87383 0.97077 0.93456 0.94243 0.91947 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.60 8.80 71.24 0.63 -1.98 16 2 C 0.19 5.08 6.82 43.28 0.30 5.37 16 3 N -0.51 -13.22 10.20 -175.84 -1.79 -15.01 16 4 C 0.12 2.73 6.61 40.29 0.27 2.99 16 5 C -0.13 -2.09 9.97 22.34 0.22 -1.87 16 6 C -0.08 -0.77 9.94 22.05 0.22 -0.55 16 7 C -0.12 -1.06 9.96 22.05 0.22 -0.84 16 8 C -0.09 -0.96 9.77 22.34 0.22 -0.74 16 9 C -0.13 -2.42 5.74 -21.29 -0.12 -2.54 16 10 C 0.00 0.04 9.38 23.01 0.22 0.26 16 11 C -0.20 -4.80 5.89 -20.00 -0.12 -4.92 16 12 C 0.56 14.92 7.65 86.76 0.66 15.59 16 13 O -0.56 -18.32 12.98 -3.92 -0.05 -18.37 16 14 N -0.70 -16.04 4.90 -445.49 -2.18 -18.23 16 15 C 0.16 4.65 2.29 44.99 0.10 4.76 16 16 H 0.07 2.24 7.49 -2.39 -0.02 2.22 16 17 C -0.15 -3.90 9.45 71.98 0.68 -3.22 16 18 C -0.11 -3.58 3.35 -10.14 -0.03 -3.61 16 19 C 0.17 7.88 6.91 86.44 0.60 8.48 16 20 N -0.64 -32.63 3.70 -716.04 -2.65 -35.28 16 21 C -0.23 -13.09 10.70 84.03 0.90 -12.19 16 22 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 24 N -0.95 -57.45 11.39 21.65 0.25 -57.20 16 25 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 C 0.13 4.80 8.38 86.49 0.72 5.53 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.55 5.84 -2.39 -0.01 2.53 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.18 1.71 6.53 -2.91 -0.02 1.69 16 38 H 0.41 6.79 6.72 -92.71 -0.62 6.16 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.76 8.00 -2.39 -0.02 1.74 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.01 0.56 8.04 -2.39 -0.02 0.54 16 44 H 0.05 2.44 7.16 -2.39 -0.02 2.42 16 45 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.03 1.20 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -75.76 386.25 2.11 -73.66 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.37 Total: 15.66 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.15 Total: 7.08 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -6.38 Total: -125.72 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.76 2.11 -73.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969782690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.487 kcal (2) G-P(sol) polarization free energy of solvation -75.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds