Wall clock time and date at job start Tue Mar 31 2020 22:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39223 * 119.15516 * 2 1 4 4 C 1.36637 * 119.90735 * 180.02562 * 3 2 1 5 5 C 1.40803 * 118.15064 * 0.02562 * 4 3 2 6 6 C 1.40479 * 121.25911 * 179.97438 * 5 4 3 7 7 C 1.36322 * 120.08344 * 179.97438 * 6 5 4 8 8 C 1.38905 * 121.05554 * 359.97438 * 7 6 5 9 9 C 1.38715 * 120.72825 * 359.97438 * 8 7 6 10 10 C 1.47434 * 120.33043 * 179.97438 * 9 8 7 11 11 O 1.21606 * 119.99764 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00382 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00022 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47045 * 34.99609 * 13 12 10 15 15 C 1.53000 * 109.47136 * 274.99616 * 13 12 10 16 16 C 1.53004 * 109.47141 * 154.99914 * 13 12 10 17 17 C 1.53499 * 114.20194 * 295.68016 * 16 13 12 18 18 N 1.47073 * 87.98271 * 220.34656 * 17 16 13 19 19 C 1.36940 * 136.05404 * 207.09125 * 18 17 16 20 20 H 1.07992 * 120.00476 * 7.50014 * 19 18 17 21 21 C 1.38809 * 119.99403 * 187.50851 * 19 18 17 22 22 N 1.31620 * 120.00068 * 174.39899 * 21 19 18 23 23 Si 1.86807 * 120.00352 * 354.39502 * 21 19 18 24 24 H 1.48500 * 109.46966 * 174.95922 * 23 21 19 25 25 H 1.48493 * 109.47091 * 294.96098 * 23 21 19 26 26 H 1.48504 * 109.46855 * 54.96130 * 23 21 19 27 27 C 1.47068 * 87.88382 * 27.34125 * 18 17 16 28 28 C 1.41548 * 118.94347 * 0.26275 * 5 4 3 29 29 N 1.31237 * 119.15066 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47561 * 90.00138 * 1 2 3 31 31 H 1.09004 * 109.47170 * 210.00024 * 1 2 3 32 32 H 1.08998 * 109.46787 * 330.00088 * 1 2 3 33 33 H 1.08005 * 120.04728 * 0.04395 * 3 2 1 34 34 H 1.07994 * 120.92726 * 180.02562 * 4 3 2 35 35 H 1.07998 * 119.96147 * 359.96776 * 6 5 4 36 36 H 1.07989 * 119.47203 * 179.97438 * 7 6 5 37 37 H 1.08006 * 119.63848 * 179.97438 * 8 7 6 38 38 H 0.97002 * 120.00125 * 359.97438 * 12 10 9 39 39 H 1.09009 * 109.47143 * 64.63752 * 15 13 12 40 40 H 1.08999 * 109.46923 * 184.63216 * 15 13 12 41 41 H 1.08998 * 109.47162 * 304.63827 * 15 13 12 42 42 H 1.08999 * 113.41397 * 68.87868 * 16 13 12 43 43 H 1.08997 * 113.46896 * 105.57052 * 17 16 13 44 44 H 1.09003 * 113.52350 * 335.12944 * 17 16 13 45 45 H 0.97005 * 119.99470 * 355.00405 * 22 21 19 46 46 H 1.09002 * 113.46505 * 87.44231 * 27 18 17 47 47 H 1.08999 * 113.46808 * 217.87742 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2158 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2321 0.0011 -0.0016 6 6 5.6357 -0.0566 -0.0028 7 6 6.2699 -1.2633 -0.0033 8 6 5.5500 -2.4512 -0.0022 9 6 4.1629 -2.4394 0.0000 10 6 3.4075 -3.7055 0.0006 11 8 2.1916 -3.6881 0.0030 12 7 4.0646 -4.8823 -0.0004 13 6 3.3139 -6.1404 0.0007 14 1 2.4039 -6.0210 -0.5872 15 6 2.9470 -6.5140 1.4383 16 6 4.1743 -7.2482 -0.6103 17 6 4.5188 -7.0333 -2.0906 18 7 4.2980 -8.4726 -2.2973 19 6 4.7527 -9.4244 -3.1705 20 1 5.5446 -9.1860 -3.8650 21 6 4.1956 -10.6958 -3.1630 22 7 4.5537 -11.5766 -4.0731 23 14 2.9375 -11.1567 -1.8613 24 1 2.4096 -12.5159 -2.1424 25 1 3.5818 -11.1428 -0.5235 26 1 1.8211 -10.1777 -1.8833 27 6 3.3692 -8.4383 -1.1576 28 6 3.4788 -1.1972 -0.0078 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6323 2.1436 0.0007 34 1 4.0944 2.1674 -0.0001 35 1 6.2130 0.8561 -0.0033 36 1 7.3493 -1.2962 -0.0046 37 1 6.0760 -3.3946 -0.0030 38 1 5.0345 -4.8962 -0.0020 39 1 2.2672 -5.7657 1.8460 40 1 2.4611 -7.4896 1.4474 41 1 3.8512 -6.5527 2.0457 42 1 5.0254 -7.5279 0.0106 43 1 5.5510 -6.7244 -2.2557 44 1 3.8013 -6.4041 -2.6174 45 1 5.1512 -11.3161 -4.7915 46 1 2.3480 -8.1795 -1.4375 47 1 3.4219 -9.3263 -0.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969930634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:42 Heat of formation + Delta-G solvation = 85.519931 kcal Electronic energy + Delta-G solvation = -28672.857291 eV Core-core repulsion = 24822.797942 eV Total energy + Delta-G solvation = -3850.059349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28432 -39.72475 -38.44162 -37.40263 -34.92081 -33.75584 -32.45679 -32.21182 -31.29487 -29.72478 -28.15902 -27.77371 -25.31295 -24.46833 -24.15733 -23.17393 -22.72629 -20.95290 -20.36439 -19.48974 -18.40954 -17.95303 -17.46096 -16.75716 -16.25212 -15.92259 -15.23138 -15.18566 -15.07333 -14.60357 -14.39689 -14.15861 -13.95802 -13.71188 -13.36300 -13.22512 -13.17060 -13.16495 -12.89028 -12.48296 -12.34194 -12.23249 -11.93632 -11.72634 -11.70324 -11.63392 -11.20654 -11.03108 -10.77417 -10.66412 -10.31200 -10.12226 -10.02323 -9.32703 -9.14215 -9.10649 -9.02079 -8.88484 -8.85856 -8.52892 -7.13634 -6.27296 -3.20991 -0.14263 0.49125 1.47604 2.45076 3.15613 3.19141 3.43214 3.48014 3.67879 3.89307 3.90717 4.21114 4.31670 4.44750 4.51264 4.62407 4.65810 4.74199 4.75069 4.93657 4.98240 5.05381 5.14077 5.21693 5.35807 5.38575 5.46220 5.52490 5.54394 5.58757 5.61495 5.71714 5.78725 5.80851 5.84975 5.94509 5.98978 6.11050 6.17242 6.24251 6.28118 6.29974 6.36047 6.45173 6.46376 6.68490 6.95159 7.14553 7.62363 7.81856 8.25557 8.40420 8.99747 9.52420 10.39448 11.22640 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002514 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.943116 B =11135.067707 C =11792.595230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 C -0.172 4.172 4 C -0.057 4.057 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.128 4.128 8 C -0.062 4.062 9 C -0.106 4.106 10 C 0.552 3.448 11 O -0.500 6.500 12 N -0.720 5.720 13 C 0.155 3.845 14 H 0.090 0.910 15 C -0.159 4.159 16 C -0.141 4.141 17 C 0.130 3.870 18 N -0.629 5.629 19 C -0.303 4.303 20 H 0.082 0.918 21 C -0.026 4.026 22 N -0.935 5.935 23 Si 1.070 2.930 24 H -0.295 1.295 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.109 3.891 28 C 0.168 3.832 29 N -0.438 5.438 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.395 0.605 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.260 0.740 46 H 0.047 0.953 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 29.512 13.077 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.006 3.994 3 C -0.192 4.192 4 C -0.083 4.083 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.146 4.146 8 C -0.082 4.082 9 C -0.110 4.110 10 C 0.338 3.662 11 O -0.374 6.374 12 N -0.373 5.373 13 C 0.050 3.950 14 H 0.108 0.892 15 C -0.218 4.218 16 C -0.161 4.161 17 C 0.003 3.997 18 N -0.357 5.357 19 C -0.429 4.429 20 H 0.100 0.900 21 C -0.225 4.225 22 N -0.577 5.577 23 Si 0.902 3.098 24 H -0.222 1.222 25 H -0.220 1.220 26 H -0.213 1.213 27 C -0.017 4.017 28 C 0.045 3.955 29 N -0.146 5.146 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.230 0.770 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.913 27.183 13.452 30.390 hybrid contribution 2.068 2.175 -0.754 3.095 sum 0.155 29.358 12.698 31.987 Atomic orbital electron populations 1.20793 0.88523 1.03714 1.03438 1.21726 0.97590 0.88052 0.92078 1.21786 0.95070 0.99426 1.02954 1.21446 0.94500 0.96997 0.95315 1.18827 0.94795 0.94024 1.04339 1.21149 0.92561 0.98703 0.96623 1.20840 1.00691 0.91909 1.01130 1.21501 0.92587 0.99263 0.94870 1.19980 0.93141 0.92680 1.05220 1.17891 0.87647 0.82985 0.77726 1.90846 1.12637 1.86815 1.47066 1.46017 1.10093 1.05463 1.75701 1.20976 0.95482 0.81730 0.96791 0.89187 1.22134 1.01556 1.01944 0.96150 1.23580 0.99625 0.95827 0.97084 1.22300 0.98484 0.87661 0.91235 1.45976 1.50049 1.04004 1.35676 1.20151 1.17226 0.91411 1.14146 0.90024 1.25742 1.01777 0.92260 1.02688 1.70922 1.37166 1.35619 1.13986 0.83727 0.76095 0.75315 0.74664 1.22242 1.22026 1.21263 1.22733 0.94127 0.95371 0.89478 1.18584 0.89398 0.91346 0.96213 1.68184 1.07692 1.27664 1.11042 0.90032 0.89858 0.90682 0.84492 0.84220 0.84927 0.84748 0.84616 0.77017 0.92387 0.91338 0.92633 0.88350 0.93974 0.94535 0.93001 0.93557 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.15 36.01 0.37 -0.52 16 2 C 0.16 1.74 6.78 -82.48 -0.56 1.18 16 3 C -0.17 -1.39 9.64 -39.79 -0.38 -1.77 16 4 C -0.06 -0.44 9.90 -39.19 -0.39 -0.83 16 5 C -0.12 -1.18 5.74 -106.82 -0.61 -1.79 16 6 C -0.07 -0.53 9.75 -39.43 -0.38 -0.92 16 7 C -0.13 -0.93 9.93 -40.02 -0.40 -1.33 16 8 C -0.06 -0.56 9.52 -39.16 -0.37 -0.94 16 9 C -0.11 -1.36 5.91 -104.61 -0.62 -1.98 16 10 C 0.55 8.31 7.73 -12.52 -0.10 8.21 16 11 O -0.50 -9.33 14.85 5.27 0.08 -9.25 16 12 N -0.72 -9.40 4.89 -54.88 -0.27 -9.67 16 13 C 0.15 2.30 2.35 -67.93 -0.16 2.14 16 14 H 0.09 1.54 7.41 -51.93 -0.38 1.16 16 15 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 16 C -0.14 -2.37 3.52 -89.97 -0.32 -2.69 16 17 C 0.13 2.57 8.12 -8.50 -0.07 2.50 16 18 N -0.63 -15.76 3.69 -184.58 -0.68 -16.44 16 19 C -0.30 -8.92 11.08 -15.06 -0.17 -9.08 16 20 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 21 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 22 N -0.93 -30.00 13.70 55.49 0.76 -29.24 16 23 Si 1.07 27.26 25.16 -169.99 -4.28 22.98 16 24 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 25 H -0.29 -6.96 6.51 56.52 0.37 -6.60 16 26 H -0.29 -6.84 6.21 56.52 0.35 -6.49 16 27 C 0.11 2.32 5.27 -8.37 -0.04 2.28 16 28 C 0.17 2.25 6.61 -84.58 -0.56 1.69 16 29 N -0.44 -6.37 8.33 -7.01 -0.06 -6.43 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.14 0.92 6.37 -52.48 -0.33 0.59 16 38 H 0.40 4.09 6.63 -40.82 -0.27 3.82 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 45 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 46 H 0.05 0.99 7.50 -51.93 -0.39 0.60 16 47 H 0.05 1.18 4.72 -51.93 -0.25 0.93 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -37.89 382.23 -9.97 -47.86 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.77 Total: 0.94 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -4.51 Total: -6.52 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.25 Total: -61.78 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.28 Total: 22.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.89 -9.97 -47.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969930634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.377 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds