Wall clock time and date at job start Tue Mar 31 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39223 * 119.15516 * 2 1 4 4 C 1.36637 * 119.90735 * 180.02562 * 3 2 1 5 5 C 1.40803 * 118.15064 * 0.02562 * 4 3 2 6 6 C 1.40479 * 121.25911 * 179.97438 * 5 4 3 7 7 C 1.36322 * 120.08344 * 179.97438 * 6 5 4 8 8 C 1.38905 * 121.05554 * 359.97438 * 7 6 5 9 9 C 1.38715 * 120.72825 * 359.97438 * 8 7 6 10 10 C 1.47434 * 120.33043 * 179.97438 * 9 8 7 11 11 O 1.21606 * 119.99764 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00382 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00022 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47045 * 34.99609 * 13 12 10 15 15 C 1.53000 * 109.47136 * 274.99616 * 13 12 10 16 16 C 1.53004 * 109.47141 * 154.99914 * 13 12 10 17 17 C 1.53499 * 114.20194 * 295.68016 * 16 13 12 18 18 N 1.47073 * 87.98271 * 220.34656 * 17 16 13 19 19 C 1.36940 * 136.05404 * 207.09125 * 18 17 16 20 20 H 1.07992 * 120.00476 * 7.50014 * 19 18 17 21 21 C 1.38809 * 119.99403 * 187.50851 * 19 18 17 22 22 N 1.31620 * 120.00068 * 174.39899 * 21 19 18 23 23 Si 1.86807 * 120.00352 * 354.39502 * 21 19 18 24 24 H 1.48500 * 109.46966 * 174.95922 * 23 21 19 25 25 H 1.48493 * 109.47091 * 294.96098 * 23 21 19 26 26 H 1.48504 * 109.46855 * 54.96130 * 23 21 19 27 27 C 1.47068 * 87.88382 * 27.34125 * 18 17 16 28 28 C 1.41548 * 118.94347 * 0.26275 * 5 4 3 29 29 N 1.31237 * 119.15066 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47561 * 90.00138 * 1 2 3 31 31 H 1.09004 * 109.47170 * 210.00024 * 1 2 3 32 32 H 1.08998 * 109.46787 * 330.00088 * 1 2 3 33 33 H 1.08005 * 120.04728 * 0.04395 * 3 2 1 34 34 H 1.07994 * 120.92726 * 180.02562 * 4 3 2 35 35 H 1.07998 * 119.96147 * 359.96776 * 6 5 4 36 36 H 1.07989 * 119.47203 * 179.97438 * 7 6 5 37 37 H 1.08006 * 119.63848 * 179.97438 * 8 7 6 38 38 H 0.97002 * 120.00125 * 359.97438 * 12 10 9 39 39 H 1.09009 * 109.47143 * 64.63752 * 15 13 12 40 40 H 1.08999 * 109.46923 * 184.63216 * 15 13 12 41 41 H 1.08998 * 109.47162 * 304.63827 * 15 13 12 42 42 H 1.08999 * 113.41397 * 68.87868 * 16 13 12 43 43 H 1.08997 * 113.46896 * 105.57052 * 17 16 13 44 44 H 1.09003 * 113.52350 * 335.12944 * 17 16 13 45 45 H 0.97005 * 119.99470 * 355.00405 * 22 21 19 46 46 H 1.09002 * 113.46505 * 87.44231 * 27 18 17 47 47 H 1.08999 * 113.46808 * 217.87742 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2158 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2321 0.0011 -0.0016 6 6 5.6357 -0.0566 -0.0028 7 6 6.2699 -1.2633 -0.0033 8 6 5.5500 -2.4512 -0.0022 9 6 4.1629 -2.4394 0.0000 10 6 3.4075 -3.7055 0.0006 11 8 2.1916 -3.6881 0.0030 12 7 4.0646 -4.8823 -0.0004 13 6 3.3139 -6.1404 0.0007 14 1 2.4039 -6.0210 -0.5872 15 6 2.9470 -6.5140 1.4383 16 6 4.1743 -7.2482 -0.6103 17 6 4.5188 -7.0333 -2.0906 18 7 4.2980 -8.4726 -2.2973 19 6 4.7527 -9.4244 -3.1705 20 1 5.5446 -9.1860 -3.8650 21 6 4.1956 -10.6958 -3.1630 22 7 4.5537 -11.5766 -4.0731 23 14 2.9375 -11.1567 -1.8613 24 1 2.4096 -12.5159 -2.1424 25 1 3.5818 -11.1428 -0.5235 26 1 1.8211 -10.1777 -1.8833 27 6 3.3692 -8.4383 -1.1576 28 6 3.4788 -1.1972 -0.0078 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6323 2.1436 0.0007 34 1 4.0944 2.1674 -0.0001 35 1 6.2130 0.8561 -0.0033 36 1 7.3493 -1.2962 -0.0046 37 1 6.0760 -3.3946 -0.0030 38 1 5.0345 -4.8962 -0.0020 39 1 2.2672 -5.7657 1.8460 40 1 2.4611 -7.4896 1.4474 41 1 3.8512 -6.5527 2.0457 42 1 5.0254 -7.5279 0.0106 43 1 5.5510 -6.7244 -2.2557 44 1 3.8013 -6.4041 -2.6174 45 1 5.1512 -11.3161 -4.7915 46 1 2.3480 -8.1795 -1.4375 47 1 3.4219 -9.3263 -0.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969930634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:41 Heat of formation + Delta-G solvation = 58.917847 kcal Electronic energy + Delta-G solvation = -28674.010844 eV Core-core repulsion = 24822.797942 eV Total energy + Delta-G solvation = -3851.212902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.02220 -40.98585 -39.83243 -38.12282 -36.25932 -34.57737 -34.41321 -32.96062 -32.35849 -30.67133 -29.56763 -28.82373 -26.98204 -25.73004 -24.91351 -24.40112 -23.37600 -22.41657 -21.46340 -21.03799 -19.58045 -19.07296 -18.85844 -17.69160 -17.24978 -17.08349 -16.67239 -16.16499 -15.86770 -15.70310 -15.65946 -15.38380 -15.15034 -14.97049 -14.77387 -14.46221 -14.06509 -13.88926 -13.76707 -13.68881 -13.34387 -13.14109 -13.09472 -13.06199 -12.96931 -12.59554 -12.38073 -12.29412 -12.28178 -12.03389 -11.69316 -11.47538 -11.31521 -11.14596 -11.04983 -10.82761 -10.11174 -10.05323 -9.67584 -9.25736 -9.23842 -8.63818 -5.50269 -0.81551 -0.17014 0.77222 1.37801 1.48485 1.66673 1.78694 2.10203 2.24849 2.52980 2.95032 3.15009 3.17084 3.24279 3.44352 3.64179 3.69854 3.82919 3.85004 3.97792 3.99278 4.18232 4.19683 4.27687 4.37454 4.43428 4.47075 4.55318 4.62904 4.64372 4.71220 4.72535 4.75417 4.76283 4.84867 4.95507 4.98047 5.05354 5.09325 5.16151 5.17349 5.22988 5.27091 5.37862 5.42797 5.54052 5.60903 5.85769 5.92587 6.62021 6.67370 7.10923 7.29879 7.35376 8.25014 8.87679 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002514 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.943116 B =11135.067707 C =11792.595230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.139 3.861 3 C -0.178 4.178 4 C -0.047 4.047 5 C -0.137 4.137 6 C -0.055 4.055 7 C -0.134 4.134 8 C -0.045 4.045 9 C -0.153 4.153 10 C 0.550 3.450 11 O -0.549 6.549 12 N -0.709 5.709 13 C 0.164 3.836 14 H 0.063 0.937 15 C -0.153 4.153 16 C -0.102 4.102 17 C 0.127 3.873 18 N -0.661 5.661 19 C -0.292 4.292 20 H 0.051 0.949 21 C -0.086 4.086 22 N -0.970 5.970 23 Si 1.106 2.894 24 H -0.304 1.304 25 H -0.262 1.262 26 H -0.266 1.266 27 C 0.098 3.902 28 C 0.136 3.864 29 N -0.498 5.498 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.410 0.590 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.056 0.944 44 H 0.032 0.968 45 H 0.246 0.754 46 H 0.046 0.954 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 32.998 15.420 36.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.013 4.013 3 C -0.197 4.197 4 C -0.073 4.073 5 C -0.140 4.140 6 C -0.073 4.073 7 C -0.151 4.151 8 C -0.065 4.065 9 C -0.157 4.157 10 C 0.338 3.662 11 O -0.427 6.427 12 N -0.363 5.363 13 C 0.058 3.942 14 H 0.081 0.919 15 C -0.211 4.211 16 C -0.122 4.122 17 C 0.002 3.998 18 N -0.389 5.389 19 C -0.420 4.420 20 H 0.069 0.931 21 C -0.278 4.278 22 N -0.615 5.615 23 Si 0.932 3.068 24 H -0.232 1.232 25 H -0.188 1.188 26 H -0.192 1.192 27 C -0.027 4.027 28 C 0.013 3.987 29 N -0.207 5.207 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.190 0.810 34 H 0.200 0.800 35 H 0.191 0.809 36 H 0.189 0.811 37 H 0.174 0.826 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.129 30.730 15.823 34.565 hybrid contribution 1.613 1.289 -1.550 2.582 sum 1.484 32.019 14.273 35.087 Atomic orbital electron populations 1.20848 0.87639 1.04048 1.03686 1.22248 0.98621 0.88706 0.91712 1.22109 0.95724 0.99432 1.02440 1.21975 0.94555 0.97719 0.93010 1.19182 0.96148 0.93781 1.04850 1.21664 0.91542 1.00502 0.93606 1.21277 1.02390 0.91025 1.00446 1.21842 0.91160 1.01297 0.92236 1.19914 0.94537 0.91427 1.09784 1.18360 0.87323 0.84063 0.76480 1.90808 1.14819 1.87533 1.49542 1.45825 1.10719 1.04445 1.75281 1.20714 0.94179 0.81888 0.97404 0.91911 1.22073 1.02379 1.01747 0.94919 1.23272 0.99288 0.94183 0.95435 1.22468 0.99196 0.84830 0.93307 1.46120 1.51065 1.05658 1.36065 1.20041 1.15798 0.92593 1.13522 0.93082 1.27091 1.03716 0.92741 1.04219 1.71024 1.38770 1.36646 1.15067 0.83311 0.74791 0.74918 0.73805 1.23238 1.18796 1.19197 1.22935 0.94011 0.97356 0.88412 1.18971 0.89582 0.92879 0.97309 1.68116 1.09095 1.29854 1.13649 0.89764 0.92342 0.87415 0.81003 0.79965 0.80888 0.81104 0.82557 0.75237 0.93482 0.90833 0.90435 0.85936 0.92520 0.95004 0.94504 0.93620 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.15 71.24 0.72 -1.08 16 2 C 0.14 3.11 6.78 42.89 0.29 3.40 16 3 C -0.18 -2.50 9.64 22.13 0.21 -2.28 16 4 C -0.05 -0.58 9.90 22.52 0.22 -0.36 16 5 C -0.14 -2.46 5.74 -21.29 -0.12 -2.58 16 6 C -0.05 -0.59 9.75 22.37 0.22 -0.37 16 7 C -0.13 -1.42 9.93 21.98 0.22 -1.20 16 8 C -0.05 -0.72 9.52 22.54 0.21 -0.51 16 9 C -0.15 -3.91 5.91 -19.86 -0.12 -4.03 16 10 C 0.55 17.02 7.73 86.67 0.67 17.69 16 11 O -0.55 -21.89 14.85 -4.05 -0.06 -21.95 16 12 N -0.71 -17.90 4.89 -445.78 -2.18 -20.08 16 13 C 0.16 4.69 2.35 44.99 0.11 4.79 16 14 H 0.06 2.18 7.41 -2.39 -0.02 2.17 16 15 C -0.15 -3.81 9.48 71.98 0.68 -3.12 16 16 C -0.10 -3.21 3.52 -10.37 -0.04 -3.25 16 17 C 0.13 4.91 8.12 83.18 0.68 5.59 16 18 N -0.66 -32.76 3.69 -737.87 -2.72 -35.49 16 19 C -0.29 -17.49 11.08 84.03 0.93 -16.56 16 20 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 21 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 22 N -0.97 -64.19 13.70 21.65 0.30 -63.90 16 23 Si 1.11 54.78 25.16 68.60 1.73 56.50 16 24 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 25 H -0.26 -11.59 6.51 99.48 0.65 -10.94 16 26 H -0.27 -12.20 6.21 99.48 0.62 -11.58 16 27 C 0.10 4.01 5.27 83.27 0.44 4.45 16 28 C 0.14 3.67 6.61 40.61 0.27 3.94 16 29 N -0.50 -15.32 8.33 -176.10 -1.47 -16.79 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.17 0.57 8.06 -2.92 -0.02 0.54 16 37 H 0.16 1.64 6.37 -2.91 -0.02 1.62 16 38 H 0.41 7.58 6.63 -92.71 -0.61 6.97 16 39 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 45 H 0.25 16.32 8.73 -92.70 -0.81 15.51 16 46 H 0.05 1.90 7.50 -2.39 -0.02 1.89 16 47 H 0.06 2.33 4.72 -2.39 -0.01 2.32 16 Total: -1.00 -90.10 382.23 1.84 -88.25 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.19 Total: 13.76 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.06 Total: -0.32 kcal Atomic # 7 Polarization: -130.17 SS G_CDS: -6.07 Total: -136.25 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 54.78 SS G_CDS: 1.73 Total: 56.50 kcal Total: -90.10 1.84 -88.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969930634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.171 kcal (2) G-P(sol) polarization free energy of solvation -90.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds