Wall clock time and date at job start Tue Mar 31 2020 22:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36531 * 120.87940 * 2 1 4 4 C 1.40239 * 119.82476 * 179.97438 * 3 2 1 5 5 C 1.48276 * 119.24313 * 179.97438 * 4 3 2 6 6 O 1.21496 * 119.99811 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99599 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99461 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47212 * 34.99880 * 8 7 5 10 10 C 1.53005 * 109.46831 * 274.99712 * 8 7 5 11 11 C 1.53002 * 109.47035 * 155.00115 * 8 7 5 12 12 C 1.53943 * 113.74049 * 278.74097 * 11 8 7 13 13 N 1.47812 * 86.03624 * 222.08213 * 12 11 8 14 14 C 1.36932 * 134.45834 * 204.63677 * 13 12 11 15 15 H 1.07995 * 120.00395 * 179.86632 * 14 13 12 16 16 C 1.38817 * 120.00007 * 359.87680 * 14 13 12 17 17 N 1.31616 * 120.00028 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47533 * 59.99831 * 18 16 14 20 20 H 1.48503 * 109.46715 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47406 * 299.99136 * 18 16 14 22 22 C 1.47583 * 91.04785 * 24.54989 * 13 12 11 23 23 N 1.31904 * 121.51266 * 0.24909 * 4 3 2 24 24 C 1.33241 * 121.29965 * 359.48318 * 23 4 3 25 25 C 1.40834 * 120.98294 * 180.25874 * 24 23 4 26 26 C 1.35986 * 119.73468 * 180.24962 * 25 24 23 27 27 C 1.39443 * 121.08682 * 0.02562 * 26 25 24 28 28 C 1.36126 * 120.92180 * 359.97129 * 27 26 25 29 29 C 1.40424 * 119.65130 * 0.04724 * 28 27 26 30 30 H 1.09005 * 109.47349 * 90.00509 * 1 2 3 31 31 H 1.09005 * 109.47400 * 210.00450 * 1 2 3 32 32 H 1.08998 * 109.47154 * 330.00467 * 1 2 3 33 33 H 1.08003 * 120.08978 * 359.95440 * 3 2 1 34 34 H 0.96995 * 120.00725 * 359.97438 * 7 5 4 35 35 H 1.08992 * 109.47061 * 300.00078 * 10 8 7 36 36 H 1.09001 * 109.46812 * 60.00445 * 10 8 7 37 37 H 1.09002 * 109.46935 * 180.02562 * 10 8 7 38 38 H 1.09002 * 112.94415 * 50.33028 * 11 8 7 39 39 H 1.09003 * 113.76909 * 336.34642 * 12 11 8 40 40 H 1.09000 * 113.77268 * 107.74525 * 12 11 8 41 41 H 0.96995 * 120.00501 * 180.02562 * 17 16 14 42 42 H 1.09002 * 113.76477 * 221.14838 * 22 13 12 43 43 H 1.09002 * 113.87465 * 89.77029 * 22 13 12 44 44 H 1.08004 * 120.13219 * 0.22698 * 25 24 23 45 45 H 1.07998 * 119.45883 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.53664 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.17403 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1718 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 0.0000 6 8 3.7559 3.4815 -0.0015 7 7 5.7057 2.4191 0.0010 8 6 6.4448 3.6841 -0.0002 9 1 5.9008 4.4233 0.5879 10 6 6.5946 4.1858 -1.4378 11 6 7.8304 3.4657 0.6108 12 6 7.8365 3.4689 2.1502 13 7 9.0720 4.2731 2.0415 14 6 10.1508 4.4887 2.8567 15 1 10.9494 5.1404 2.5345 16 6 10.2180 3.8695 4.0973 17 7 9.2446 3.0756 4.4902 18 14 11.6901 4.1632 5.2091 19 1 11.7912 5.6107 5.5247 20 1 11.5212 3.3933 6.4677 21 1 12.9279 3.7193 4.5192 22 6 8.6770 4.7482 0.7012 23 7 4.2785 0.0090 -0.0038 24 6 3.6480 -1.1648 0.0013 25 6 4.3687 -2.3749 0.0021 26 6 3.6993 -3.5585 0.0022 27 6 2.3054 -3.5974 0.0011 28 6 1.5736 -2.4496 0.0004 29 6 2.2291 -1.2078 -0.0001 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6836 2.1161 -0.0007 34 1 6.1863 1.5766 0.0025 35 1 7.1386 3.4466 -2.0257 36 1 5.6074 4.3414 -1.8730 37 1 7.1449 5.1267 -1.4387 38 1 8.3600 2.6202 0.1716 39 1 6.9986 4.0085 2.5917 40 1 7.9895 2.4839 2.5911 41 1 9.2914 2.6432 5.3571 42 1 9.5000 4.7826 -0.0128 43 1 8.0867 5.6644 0.7141 44 1 5.4486 -2.3627 0.0021 45 1 4.2563 -4.4838 0.0023 46 1 1.7994 -4.5515 0.0008 47 1 0.4945 -2.4938 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969985018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:23 Heat of formation + Delta-G solvation = 47.752021 kcal Electronic energy + Delta-G solvation = -28385.170384 eV Core-core repulsion = 24533.473296 eV Total energy + Delta-G solvation = -3851.697088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16429 -40.91626 -39.69461 -37.89348 -36.32874 -35.75330 -34.17909 -32.32843 -31.41393 -31.13466 -29.37164 -28.77115 -26.82308 -26.04931 -25.45223 -24.55848 -23.13236 -22.32103 -21.45092 -20.76814 -19.14082 -18.91859 -18.74943 -18.11585 -17.26304 -16.93287 -16.51176 -16.38163 -15.86115 -15.69734 -15.45828 -15.33822 -15.12542 -14.81510 -14.66558 -14.35043 -14.16257 -13.95776 -13.87108 -13.45893 -13.28292 -13.11119 -13.00331 -12.90844 -12.73764 -12.66526 -12.61177 -12.56849 -12.34139 -12.04743 -11.76463 -11.56547 -11.39223 -11.21618 -11.20087 -10.87243 -10.59836 -10.15472 -9.81676 -9.21167 -8.93742 -7.90774 -5.25172 -0.86197 -0.36051 0.90523 1.34916 1.43590 1.47936 1.53932 1.98514 2.21920 2.46730 2.94375 3.06303 3.29197 3.35981 3.49450 3.57659 3.72168 3.76879 3.85341 3.91313 4.15722 4.21358 4.26844 4.31470 4.44932 4.48259 4.50375 4.56091 4.66094 4.72411 4.75987 4.80549 4.83991 4.97639 5.00321 5.02715 5.06335 5.10999 5.14042 5.23790 5.30904 5.40303 5.42446 5.45656 5.52284 5.52732 5.63028 5.86656 5.91754 6.35079 6.68689 6.89794 7.07647 7.59906 8.55834 9.25903 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.002551 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.136760 B =10974.513308 C =12155.225519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.022 4.022 3 C -0.151 4.151 4 C 0.101 3.899 5 C 0.566 3.434 6 O -0.564 6.564 7 N -0.692 5.692 8 C 0.156 3.844 9 H 0.066 0.934 10 C -0.148 4.148 11 C -0.111 4.111 12 C 0.168 3.832 13 N -0.644 5.644 14 C -0.236 4.236 15 H 0.087 0.913 16 C -0.072 4.072 17 N -0.956 5.956 18 Si 0.982 3.018 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.272 1.272 22 C 0.133 3.867 23 N -0.465 5.465 24 C 0.099 3.901 25 C -0.111 4.111 26 C -0.092 4.092 27 C -0.103 4.103 28 C -0.103 4.103 29 C -0.102 4.102 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.003 0.997 40 H 0.038 0.962 41 H 0.247 0.753 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.137 0.863 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 -15.156 -14.719 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.172 4.172 4 C -0.051 4.051 5 C 0.351 3.649 6 O -0.443 6.443 7 N -0.341 5.341 8 C 0.051 3.949 9 H 0.085 0.915 10 C -0.206 4.206 11 C -0.131 4.131 12 C 0.042 3.958 13 N -0.370 5.370 14 C -0.364 4.364 15 H 0.105 0.895 16 C -0.264 4.264 17 N -0.605 5.605 18 Si 0.809 3.191 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.198 1.198 22 C 0.008 3.992 23 N -0.178 5.178 24 C -0.024 4.024 25 C -0.130 4.130 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.104 4.104 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.251 0.749 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.155 0.845 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.669 -14.464 -14.456 27.690 hybrid contribution 0.391 0.212 1.219 1.298 sum -18.278 -14.252 -13.237 26.691 Atomic orbital electron populations 1.21004 0.86454 1.05127 1.04676 1.20560 0.98852 0.90655 0.92897 1.21674 0.92939 1.00721 1.01829 1.21197 0.92476 0.91551 0.99863 1.18213 0.82696 0.87706 0.76293 1.90725 1.69272 1.32299 1.52014 1.45930 1.05541 1.10726 1.71948 1.20996 0.90757 0.85145 0.97990 0.91533 1.22048 1.02046 1.02430 0.94119 1.23448 0.94174 0.99836 0.95635 1.22151 0.86611 0.94793 0.92214 1.46413 1.18831 1.54337 1.17463 1.19441 0.96619 1.23331 0.97057 0.89543 1.25702 1.01310 1.00174 0.99234 1.70030 1.34425 1.35118 1.20901 0.85104 0.78802 0.77491 0.77655 1.20382 1.22160 1.19816 1.22671 0.95573 0.94505 0.86421 1.67738 1.40684 0.97924 1.11446 1.19296 0.91208 0.92001 0.99911 1.21086 1.01001 0.90306 1.00571 1.21365 0.95340 0.98164 0.96327 1.21482 0.93807 0.99924 0.96836 1.21406 1.01832 0.89998 0.98875 1.19153 0.93407 0.95889 1.01906 0.88302 0.88517 0.89862 0.83305 0.74931 0.91013 0.92925 0.90046 0.88113 0.97874 0.94366 0.94399 0.91477 0.93505 0.84522 0.82232 0.81658 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.59 71.24 0.68 -0.49 16 2 C -0.02 -0.42 5.92 -19.66 -0.12 -0.53 16 3 C -0.15 -3.84 9.23 22.36 0.21 -3.64 16 4 C 0.10 3.10 6.75 42.29 0.29 3.39 16 5 C 0.57 19.46 7.78 86.91 0.68 20.13 16 6 O -0.56 -21.88 15.94 -3.70 -0.06 -21.94 16 7 N -0.69 -22.58 5.06 -444.98 -2.25 -24.83 16 8 C 0.16 5.18 2.38 44.99 0.11 5.29 16 9 H 0.07 2.55 7.41 -2.39 -0.02 2.53 16 10 C -0.15 -3.97 9.31 71.98 0.67 -3.30 16 11 C -0.11 -4.20 3.47 -10.14 -0.04 -4.23 16 12 C 0.17 8.51 7.08 86.44 0.61 9.12 16 13 N -0.64 -34.44 3.70 -716.16 -2.65 -37.09 16 14 C -0.24 -13.72 10.70 84.04 0.90 -12.82 16 15 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 16 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 17 N -0.96 -60.23 11.39 21.65 0.25 -59.98 16 18 Si 0.98 47.11 29.55 68.60 2.03 49.13 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.13 5.39 7.64 86.48 0.66 6.05 16 23 N -0.47 -13.83 9.47 -177.77 -1.68 -15.52 16 24 C 0.10 2.51 6.61 40.49 0.27 2.77 16 25 C -0.11 -2.23 9.99 22.38 0.22 -2.00 16 26 C -0.09 -1.19 9.94 22.04 0.22 -0.97 16 27 C -0.10 -1.03 9.95 22.07 0.22 -0.81 16 28 C -0.10 -1.27 9.31 22.31 0.21 -1.07 16 29 C -0.10 -2.05 5.75 -21.22 -0.12 -2.17 16 30 H 0.10 0.70 8.14 -2.38 -0.02 0.69 16 31 H 0.10 0.57 6.51 -2.38 -0.02 0.55 16 32 H 0.08 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.15 3.63 7.60 -2.91 -0.02 3.61 16 34 H 0.41 12.83 7.91 -92.71 -0.73 12.09 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.98 7.52 -2.39 -0.02 1.96 16 38 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.00 0.19 7.99 -2.39 -0.02 0.17 16 40 H 0.04 2.17 7.17 -2.39 -0.02 2.15 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 43 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 47 H 0.16 0.92 6.44 -2.91 -0.02 0.90 16 Total: -1.00 -79.10 389.08 2.02 -77.08 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.26 Total: 22.17 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.13 Total: 10.96 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -6.34 Total: -137.41 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -79.10 2.02 -77.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969985018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.836 kcal (2) G-P(sol) polarization free energy of solvation -79.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds