Wall clock time and date at job start Tue Mar 31 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36555 * 120.09000 * 2 1 4 4 C 1.40716 * 118.24111 * 180.21251 * 3 2 1 5 5 C 1.40425 * 121.28744 * 179.20195 * 4 3 2 6 6 C 1.36126 * 119.64827 * 180.02562 * 5 4 3 7 7 C 1.39440 * 120.92389 * 0.02562 * 6 5 4 8 8 C 1.35988 * 121.08737 * 0.02562 * 7 6 5 9 9 C 1.40837 * 119.73099 * 0.24174 * 8 7 6 10 10 N 1.33248 * 120.98269 * 179.72227 * 9 8 7 11 11 C 1.31906 * 121.29771 * 180.02562 * 10 9 8 12 12 C 1.48271 * 119.23686 * 180.02562 * 11 10 9 13 13 O 1.21504 * 119.99760 * 174.14633 * 12 11 10 14 14 N 1.34776 * 120.00579 * 354.14676 * 12 11 10 15 15 C 1.46492 * 120.00308 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.47322 * 34.99988 * 15 14 12 17 17 C 1.52998 * 109.47351 * 275.00178 * 15 14 12 18 18 C 1.53004 * 109.47393 * 154.99722 * 15 14 12 19 19 C 1.53949 * 113.74228 * 278.74459 * 18 15 14 20 20 N 1.47809 * 86.03488 * 222.07954 * 19 18 15 21 21 C 1.36931 * 134.46075 * 204.63890 * 20 19 18 22 22 H 1.08003 * 120.00547 * 179.86891 * 21 20 19 23 23 C 1.38816 * 119.99640 * 359.87337 * 21 20 19 24 24 N 1.31620 * 120.00043 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99962 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47316 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47138 * 119.99855 * 25 23 21 28 28 H 1.48503 * 109.46973 * 240.00009 * 25 23 21 29 29 C 1.47584 * 91.05037 * 24.55121 * 20 19 18 30 30 H 1.08993 * 109.47057 * 263.66476 * 1 2 3 31 31 H 1.08996 * 109.46683 * 23.66383 * 1 2 3 32 32 H 1.08997 * 109.46525 * 143.66173 * 1 2 3 33 33 H 1.08000 * 120.87093 * 359.45225 * 3 2 1 34 34 H 1.08004 * 120.17495 * 0.03877 * 5 4 3 35 35 H 1.08003 * 119.53484 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.45196 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.13320 * 179.97438 * 8 7 6 38 38 H 0.96999 * 119.99300 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.47377 * 59.99528 * 17 15 14 40 40 H 1.09003 * 109.47458 * 180.02562 * 17 15 14 41 41 H 1.09003 * 109.46752 * 300.00159 * 17 15 14 42 42 H 1.09003 * 112.93857 * 50.33336 * 18 15 14 43 43 H 1.09001 * 113.76576 * 336.34773 * 19 18 15 44 44 H 1.08993 * 113.76822 * 107.74289 * 19 18 15 45 45 H 0.97003 * 120.00221 * 180.02562 * 24 23 21 46 46 H 1.09009 * 113.76686 * 221.15102 * 29 20 19 47 47 H 1.08994 * 113.87362 * 89.76873 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1815 0.0000 4 6 3.5981 1.1361 -0.0046 5 6 4.3656 2.3119 -0.0216 6 6 5.7243 2.2291 -0.0261 7 6 6.3669 0.9916 -0.0146 8 6 5.6569 -0.1681 0.0009 9 6 4.2491 -0.1253 0.0004 10 7 3.5288 -1.2462 0.0098 11 6 2.2101 -1.2133 0.0089 12 6 1.4539 -2.4886 0.0202 13 8 0.2436 -2.4763 0.1268 14 7 2.1089 -3.6616 -0.0877 15 6 1.3618 -4.9216 -0.0759 16 1 0.4045 -4.7811 -0.5779 17 6 1.1199 -5.3576 1.3706 18 6 2.1669 -5.9989 -0.8055 19 6 2.0345 -5.9401 -2.3382 20 7 1.9374 -7.4140 -2.2836 21 6 2.1987 -8.4258 -3.1685 22 1 2.0426 -9.4535 -2.8753 23 6 2.6643 -8.1306 -4.4425 24 7 2.8542 -6.8782 -4.8000 25 14 3.0215 -9.5108 -5.6495 26 1 2.7290 -10.8176 -5.0078 27 1 2.1682 -9.3483 -6.8539 28 1 4.4518 -9.4638 -6.0461 29 6 1.4482 -7.3574 -0.8924 30 1 -0.3633 -0.1134 1.0213 31 1 -0.3632 0.9412 -0.4125 32 1 -0.3632 -0.8278 -0.6090 33 1 1.6674 2.1257 -0.0089 34 1 3.8805 3.2768 -0.0308 35 1 6.3129 3.1346 -0.0387 36 1 7.4462 0.9536 -0.0189 37 1 6.1704 -1.1181 0.0093 38 1 3.0751 -3.6714 -0.1731 39 1 0.5464 -4.5902 1.8904 40 1 0.5644 -6.2954 1.3794 41 1 2.0772 -5.4981 1.8726 42 1 3.1971 -6.0688 -0.4563 43 1 1.1224 -5.4521 -2.6819 44 1 2.9293 -5.5760 -2.8427 45 1 3.1792 -6.6718 -5.6903 46 1 1.8760 -8.1229 -0.2448 47 1 0.3638 -7.2870 -0.8086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970182642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:07 Heat of formation + Delta-G solvation = 74.079520 kcal Electronic energy + Delta-G solvation = -28603.463671 eV Core-core repulsion = 24752.908228 eV Total energy + Delta-G solvation = -3850.555442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30519 -39.67175 -38.18324 -37.09138 -35.06662 -34.14920 -32.18559 -31.84925 -31.01062 -29.84950 -27.48362 -27.22394 -25.64674 -24.66761 -23.86673 -22.79456 -22.32145 -21.67298 -20.39055 -19.37049 -18.19268 -17.92394 -16.92761 -16.70160 -15.98837 -15.56905 -15.38109 -14.85273 -14.82487 -14.64165 -14.23055 -14.06174 -13.82373 -13.55329 -13.38415 -13.23891 -13.16803 -12.91697 -12.47530 -12.26295 -12.11271 -11.92229 -11.82763 -11.78658 -11.61284 -11.25492 -11.24766 -10.88375 -10.68507 -10.60284 -10.32271 -10.11429 -9.88200 -9.70736 -9.48930 -9.32766 -9.00194 -8.76632 -8.67687 -8.49331 -6.83395 -5.72793 -3.05004 -0.03438 0.44078 1.68474 2.28251 3.14489 3.19494 3.41031 3.46081 3.48822 3.88796 3.91035 4.26708 4.45580 4.48161 4.48677 4.64349 4.81213 4.84843 5.01791 5.08042 5.14536 5.31441 5.33212 5.40882 5.48326 5.57115 5.66608 5.69395 5.70565 5.73007 5.84546 5.85859 5.99418 6.05103 6.08180 6.10529 6.15178 6.26539 6.33571 6.40255 6.44735 6.55818 6.63521 6.71266 6.84593 7.28360 7.40995 7.42016 7.60946 7.76743 8.01990 8.32160 9.08364 9.74748 10.64366 11.44215 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.002666 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.525853 B =10498.991774 C =11701.880221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.074 4.074 4 C -0.082 4.082 5 C -0.105 4.105 6 C -0.107 4.107 7 C -0.110 4.110 8 C -0.080 4.080 9 C 0.118 3.882 10 N -0.437 5.437 11 C 0.119 3.881 12 C 0.567 3.433 13 O -0.530 6.530 14 N -0.693 5.693 15 C 0.149 3.851 16 H 0.089 0.911 17 C -0.158 4.158 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.221 4.221 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.131 3.869 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.410 0.590 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.252 0.748 46 H 0.044 0.956 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 20.589 13.807 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.100 4.100 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.130 4.130 8 C -0.099 4.099 9 C -0.006 4.006 10 N -0.148 5.148 11 C -0.034 4.034 12 C 0.351 3.649 13 O -0.406 6.406 14 N -0.343 5.343 15 C 0.044 3.956 16 H 0.108 0.892 17 C -0.216 4.216 18 C -0.167 4.167 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.004 3.996 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.162 0.838 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.246 0.754 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.780 19.601 13.570 24.002 hybrid contribution 0.309 0.186 -0.869 0.941 sum 3.089 19.787 12.701 23.715 Atomic orbital electron populations 1.21087 0.88714 1.03501 1.04008 1.20574 0.98657 0.92055 0.97412 1.21347 0.92389 0.98455 0.97760 1.18963 0.94235 0.94557 1.00658 1.20976 0.94101 0.97052 1.00199 1.20992 0.94651 0.98098 0.98801 1.20924 1.00560 0.92003 0.99476 1.20925 0.91063 0.99628 0.98236 1.18846 0.94205 0.87677 0.99882 1.67837 1.06524 1.30649 1.09760 1.21325 0.89544 0.94072 0.98503 1.17854 0.86675 0.83019 0.77338 1.90719 1.12989 1.86593 1.50341 1.45996 1.11743 1.05170 1.71384 1.21180 0.96272 0.81986 0.96154 0.89247 1.22128 1.01690 1.01565 0.96229 1.23825 0.99232 0.94560 0.99045 1.22291 0.99585 0.85064 0.88502 1.46001 1.75350 1.02413 1.10141 1.19068 1.36932 0.86487 0.92414 0.90233 1.24789 1.02039 0.96454 0.97299 1.69835 1.51413 1.16024 1.19498 0.86060 0.77596 0.80976 0.81223 1.20481 1.21791 1.21743 1.22485 0.95931 0.93168 0.87990 0.90460 0.92348 0.87893 0.83849 0.85148 0.85444 0.85102 0.84263 0.75446 0.92735 0.91303 0.92668 0.89319 0.95637 0.91034 0.93762 0.93762 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.68 36.01 0.31 -0.98 16 2 C -0.08 -1.03 5.89 -104.48 -0.62 -1.64 16 3 C -0.07 -0.74 9.50 -39.25 -0.37 -1.11 16 4 C -0.08 -0.88 5.75 -106.72 -0.61 -1.49 16 5 C -0.10 -0.84 9.77 -39.52 -0.39 -1.22 16 6 C -0.11 -0.76 9.95 -39.89 -0.40 -1.16 16 7 C -0.11 -0.86 9.94 -39.94 -0.40 -1.25 16 8 C -0.08 -0.81 9.99 -39.41 -0.39 -1.20 16 9 C 0.12 1.45 6.61 -84.85 -0.56 0.89 16 10 N -0.44 -6.08 9.48 -7.54 -0.07 -6.15 16 11 C 0.12 1.70 6.75 -82.96 -0.56 1.14 16 12 C 0.57 8.83 7.71 -12.13 -0.09 8.74 16 13 O -0.53 -8.98 12.88 5.36 0.07 -8.91 16 14 N -0.69 -10.53 5.06 -54.62 -0.28 -10.80 16 15 C 0.15 2.36 2.38 -67.93 -0.16 2.20 16 16 H 0.09 1.59 7.41 -51.93 -0.39 1.20 16 17 C -0.16 -2.15 9.31 37.16 0.35 -1.80 16 18 C -0.15 -2.70 3.47 -89.69 -0.31 -3.01 16 19 C 0.17 4.08 7.08 -2.84 -0.02 4.06 16 20 N -0.61 -15.97 3.70 -177.71 -0.66 -16.63 16 21 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 22 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -27.80 11.39 55.49 0.63 -27.17 16 25 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 C 0.13 2.66 7.64 -2.97 -0.02 2.64 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 32 H 0.10 1.38 5.80 -51.93 -0.30 1.08 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.41 5.93 7.92 -40.82 -0.32 5.61 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 44 H 0.07 1.90 7.17 -51.93 -0.37 1.52 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 47 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -33.50 387.09 -10.80 -44.29 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.80 Total: 4.14 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -4.50 Total: -2.06 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.37 Total: -60.75 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.50 -10.80 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970182642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.374 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds