Wall clock time and date at job start Tue Mar 31 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36555 * 120.09000 * 2 1 4 4 C 1.40716 * 118.24111 * 180.21251 * 3 2 1 5 5 C 1.40425 * 121.28744 * 179.20195 * 4 3 2 6 6 C 1.36126 * 119.64827 * 180.02562 * 5 4 3 7 7 C 1.39440 * 120.92389 * 0.02562 * 6 5 4 8 8 C 1.35988 * 121.08737 * 0.02562 * 7 6 5 9 9 C 1.40837 * 119.73099 * 0.24174 * 8 7 6 10 10 N 1.33248 * 120.98269 * 179.72227 * 9 8 7 11 11 C 1.31906 * 121.29771 * 180.02562 * 10 9 8 12 12 C 1.48271 * 119.23686 * 180.02562 * 11 10 9 13 13 O 1.21504 * 119.99760 * 174.14633 * 12 11 10 14 14 N 1.34776 * 120.00579 * 354.14676 * 12 11 10 15 15 C 1.46492 * 120.00308 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.47322 * 34.99988 * 15 14 12 17 17 C 1.52998 * 109.47351 * 275.00178 * 15 14 12 18 18 C 1.53004 * 109.47393 * 154.99722 * 15 14 12 19 19 C 1.53949 * 113.74228 * 278.74459 * 18 15 14 20 20 N 1.47809 * 86.03488 * 222.07954 * 19 18 15 21 21 C 1.36931 * 134.46075 * 204.63890 * 20 19 18 22 22 H 1.08003 * 120.00547 * 179.86891 * 21 20 19 23 23 C 1.38816 * 119.99640 * 359.87337 * 21 20 19 24 24 N 1.31620 * 120.00043 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99962 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47316 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47138 * 119.99855 * 25 23 21 28 28 H 1.48503 * 109.46973 * 240.00009 * 25 23 21 29 29 C 1.47584 * 91.05037 * 24.55121 * 20 19 18 30 30 H 1.08993 * 109.47057 * 263.66476 * 1 2 3 31 31 H 1.08996 * 109.46683 * 23.66383 * 1 2 3 32 32 H 1.08997 * 109.46525 * 143.66173 * 1 2 3 33 33 H 1.08000 * 120.87093 * 359.45225 * 3 2 1 34 34 H 1.08004 * 120.17495 * 0.03877 * 5 4 3 35 35 H 1.08003 * 119.53484 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.45196 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.13320 * 179.97438 * 8 7 6 38 38 H 0.96999 * 119.99300 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.47377 * 59.99528 * 17 15 14 40 40 H 1.09003 * 109.47458 * 180.02562 * 17 15 14 41 41 H 1.09003 * 109.46752 * 300.00159 * 17 15 14 42 42 H 1.09003 * 112.93857 * 50.33336 * 18 15 14 43 43 H 1.09001 * 113.76576 * 336.34773 * 19 18 15 44 44 H 1.08993 * 113.76822 * 107.74289 * 19 18 15 45 45 H 0.97003 * 120.00221 * 180.02562 * 24 23 21 46 46 H 1.09009 * 113.76686 * 221.15102 * 29 20 19 47 47 H 1.08994 * 113.87362 * 89.76873 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1815 0.0000 4 6 3.5981 1.1361 -0.0046 5 6 4.3656 2.3119 -0.0216 6 6 5.7243 2.2291 -0.0261 7 6 6.3669 0.9916 -0.0146 8 6 5.6569 -0.1681 0.0009 9 6 4.2491 -0.1253 0.0004 10 7 3.5288 -1.2462 0.0098 11 6 2.2101 -1.2133 0.0089 12 6 1.4539 -2.4886 0.0202 13 8 0.2436 -2.4763 0.1268 14 7 2.1089 -3.6616 -0.0877 15 6 1.3618 -4.9216 -0.0759 16 1 0.4045 -4.7811 -0.5779 17 6 1.1199 -5.3576 1.3706 18 6 2.1669 -5.9989 -0.8055 19 6 2.0345 -5.9401 -2.3382 20 7 1.9374 -7.4140 -2.2836 21 6 2.1987 -8.4258 -3.1685 22 1 2.0426 -9.4535 -2.8753 23 6 2.6643 -8.1306 -4.4425 24 7 2.8542 -6.8782 -4.8000 25 14 3.0215 -9.5108 -5.6495 26 1 2.7290 -10.8176 -5.0078 27 1 2.1682 -9.3483 -6.8539 28 1 4.4518 -9.4638 -6.0461 29 6 1.4482 -7.3574 -0.8924 30 1 -0.3633 -0.1134 1.0213 31 1 -0.3632 0.9412 -0.4125 32 1 -0.3632 -0.8278 -0.6090 33 1 1.6674 2.1257 -0.0089 34 1 3.8805 3.2768 -0.0308 35 1 6.3129 3.1346 -0.0387 36 1 7.4462 0.9536 -0.0189 37 1 6.1704 -1.1181 0.0093 38 1 3.0751 -3.6714 -0.1731 39 1 0.5464 -4.5902 1.8904 40 1 0.5644 -6.2954 1.3794 41 1 2.0772 -5.4981 1.8726 42 1 3.1971 -6.0688 -0.4563 43 1 1.1224 -5.4521 -2.6819 44 1 2.9293 -5.5760 -2.8427 45 1 3.1792 -6.6718 -5.6903 46 1 1.8760 -8.1229 -0.2448 47 1 0.3638 -7.2870 -0.8086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970182642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:07 Heat of formation + Delta-G solvation = 53.440009 kcal Electronic energy + Delta-G solvation = -28604.358667 eV Core-core repulsion = 24752.908228 eV Total energy + Delta-G solvation = -3851.450439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17938 -40.87098 -39.72742 -37.96374 -36.38669 -35.11601 -34.15034 -32.64744 -32.14250 -30.87457 -29.36773 -28.03027 -26.83502 -26.21282 -25.55875 -23.65103 -23.11341 -23.01516 -21.64811 -20.92670 -19.19901 -18.90848 -18.74031 -17.68730 -17.29860 -16.94230 -16.51039 -16.43320 -15.78586 -15.61748 -15.44371 -15.22257 -15.12803 -14.75534 -14.64448 -14.30191 -14.06670 -13.94340 -13.91800 -13.43766 -13.30872 -13.24160 -13.10409 -12.91439 -12.69596 -12.60756 -12.60134 -12.50084 -12.43408 -11.96837 -11.76327 -11.48281 -11.37276 -11.28075 -11.07622 -10.89497 -10.47640 -10.10069 -9.68183 -9.20637 -8.93503 -7.91232 -5.25346 -0.84432 -0.34540 0.92393 1.39675 1.43797 1.45439 1.55774 2.01839 2.21641 2.46259 2.96739 3.07109 3.29314 3.36534 3.53911 3.64811 3.72346 3.74902 3.88211 3.93175 4.11116 4.22361 4.28004 4.36986 4.41248 4.46658 4.56914 4.63026 4.72811 4.76870 4.80061 4.83442 4.87169 4.94284 4.99906 5.05537 5.07632 5.10686 5.23980 5.30541 5.32915 5.38405 5.45045 5.48590 5.52877 5.60506 5.65148 5.87598 5.91813 6.37721 6.69120 6.90036 7.12047 7.59754 8.55635 9.25791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.002666 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.525853 B =10498.991774 C =11701.880221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.059 4.059 4 C -0.096 4.096 5 C -0.104 4.104 6 C -0.102 4.102 7 C -0.096 4.096 8 C -0.109 4.109 9 C 0.090 3.910 10 N -0.458 5.458 11 C 0.092 3.908 12 C 0.563 3.437 13 O -0.550 6.550 14 N -0.695 5.695 15 C 0.158 3.842 16 H 0.068 0.932 17 C -0.148 4.148 18 C -0.112 4.112 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.233 4.233 22 H 0.087 0.913 23 C -0.072 4.072 24 N -0.956 5.956 25 Si 0.981 3.019 26 H -0.262 1.262 27 H -0.294 1.294 28 H -0.291 1.291 29 C 0.133 3.867 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.412 0.588 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.005 0.995 44 H 0.037 0.963 45 H 0.247 0.753 46 H 0.066 0.934 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 22.465 15.189 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.085 4.085 4 C -0.098 4.098 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.128 4.128 9 C -0.034 4.034 10 N -0.169 5.169 11 C -0.061 4.061 12 C 0.349 3.651 13 O -0.428 6.428 14 N -0.344 5.344 15 C 0.053 3.947 16 H 0.087 0.913 17 C -0.206 4.206 18 C -0.131 4.131 19 C 0.043 3.957 20 N -0.371 5.371 21 C -0.361 4.361 22 H 0.105 0.895 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.809 3.191 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.218 1.218 29 C 0.008 3.992 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.199 0.801 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.248 0.752 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.023 0.977 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.881 21.460 14.996 26.466 hybrid contribution 0.077 -0.255 -1.277 1.305 sum 3.958 21.205 13.719 25.564 Atomic orbital electron populations 1.20967 0.88299 1.03708 1.03496 1.20710 0.99079 0.92198 0.98903 1.21747 0.92330 0.99010 0.95374 1.19290 0.94875 0.94952 1.00649 1.21379 0.94526 0.97265 0.99044 1.21472 0.94757 0.99018 0.96744 1.21342 1.01977 0.91515 0.96766 1.21078 0.90504 1.00803 1.00376 1.19293 0.95154 0.88163 1.00776 1.67736 1.06549 1.32104 1.10513 1.21184 0.89972 0.93936 1.00984 1.18184 0.86623 0.83622 0.76665 1.90700 1.13803 1.87042 1.51258 1.45959 1.11782 1.05053 1.71653 1.20962 0.94704 0.81658 0.97373 0.91338 1.22042 1.02638 1.01915 0.94012 1.23447 1.00018 0.94628 0.95044 1.22148 0.97011 0.84344 0.92230 1.46428 1.75935 1.02648 1.12068 1.19511 1.35959 0.87563 0.93095 0.89539 1.25691 1.02645 0.98844 0.99295 1.70046 1.52828 1.18126 1.19491 0.84974 0.76927 0.78741 0.78479 1.18661 1.22159 1.21768 1.22672 0.96760 0.94444 0.85295 0.90614 0.89559 0.90849 0.80122 0.81860 0.81809 0.82341 0.84572 0.75174 0.92842 0.90140 0.91229 0.88292 0.97745 0.94461 0.94429 0.91577 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.68 71.24 0.62 -1.80 16 2 C -0.11 -2.61 5.89 -19.77 -0.12 -2.72 16 3 C -0.06 -1.09 9.50 22.48 0.21 -0.88 16 4 C -0.10 -1.89 5.75 -21.22 -0.12 -2.01 16 5 C -0.10 -1.28 9.77 22.31 0.22 -1.06 16 6 C -0.10 -1.04 9.95 22.07 0.22 -0.82 16 7 C -0.10 -1.25 9.94 22.04 0.22 -1.03 16 8 C -0.11 -2.17 9.99 22.38 0.22 -1.95 16 9 C 0.09 2.24 6.61 40.48 0.27 2.51 16 10 N -0.46 -13.40 9.48 -177.77 -1.69 -15.09 16 11 C 0.09 2.75 6.75 42.29 0.29 3.03 16 12 C 0.56 18.66 7.71 86.91 0.67 19.33 16 13 O -0.55 -19.78 12.88 -3.73 -0.05 -19.83 16 14 N -0.69 -22.18 5.06 -445.01 -2.25 -24.43 16 15 C 0.16 5.13 2.38 44.99 0.11 5.23 16 16 H 0.07 2.54 7.41 -2.39 -0.02 2.52 16 17 C -0.15 -3.88 9.31 71.98 0.67 -3.21 16 18 C -0.11 -4.17 3.47 -10.13 -0.04 -4.20 16 19 C 0.17 8.44 7.08 86.44 0.61 9.06 16 20 N -0.64 -34.23 3.70 -716.16 -2.65 -36.88 16 21 C -0.23 -13.46 10.70 84.04 0.90 -12.56 16 22 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.96 -60.01 11.39 21.65 0.25 -59.76 16 25 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 26 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 29 C 0.13 5.34 7.64 86.48 0.66 6.00 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 32 H 0.07 2.09 5.80 -2.39 -0.01 2.08 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 36 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.41 12.66 7.92 -92.71 -0.73 11.92 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.00 0.25 7.99 -2.39 -0.02 0.24 16 44 H 0.04 2.10 7.17 -2.39 -0.02 2.08 16 45 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 47 H 0.05 1.82 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -77.07 387.09 1.97 -75.10 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.25 Total: 22.72 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.08 Total: 9.11 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -6.34 Total: -136.16 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.07 1.97 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970182642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.539 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds