Wall clock time and date at job start Tue Mar 31 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36538 * 120.09340 * 2 1 4 4 C 1.40718 * 118.24151 * 180.17450 * 3 2 1 5 5 C 1.40433 * 121.27335 * 179.84209 * 4 3 2 6 6 C 1.36134 * 119.64497 * 179.76352 * 5 4 3 7 7 C 1.39436 * 120.91855 * 359.95864 * 6 5 4 8 8 C 1.35990 * 121.09047 * 0.02562 * 7 6 5 9 9 C 1.40831 * 119.73692 * 0.02562 * 8 7 6 10 10 N 1.33246 * 120.99737 * 180.02562 * 9 8 7 11 11 C 1.31901 * 121.30189 * 179.97438 * 10 9 8 12 12 C 1.48274 * 119.24213 * 180.02562 * 11 10 9 13 13 O 1.21494 * 120.00369 * 174.21695 * 12 11 10 14 14 N 1.34779 * 119.99744 * 354.21455 * 12 11 10 15 15 C 1.46495 * 119.99920 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.47109 * 324.99526 * 15 14 12 17 17 C 1.52996 * 109.47731 * 84.99648 * 15 14 12 18 18 C 1.53001 * 109.47142 * 205.00039 * 15 14 12 19 19 C 1.53941 * 113.74287 * 161.68667 * 18 15 14 20 20 N 1.47586 * 86.11973 * 222.04557 * 19 18 15 21 21 C 1.36931 * 134.49542 * 204.64019 * 20 19 18 22 22 H 1.08002 * 119.99911 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00140 * 0.02562 * 21 20 19 24 24 N 1.31620 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00153 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46713 * 59.99796 * 25 23 21 27 27 H 1.48499 * 109.47393 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47326 * 300.00194 * 25 23 21 29 29 C 1.47585 * 91.00857 * 24.63994 * 20 19 18 30 30 H 1.09000 * 109.47125 * 263.27942 * 1 2 3 31 31 H 1.09005 * 109.47008 * 23.27518 * 1 2 3 32 32 H 1.09002 * 109.47454 * 143.27552 * 1 2 3 33 33 H 1.08000 * 120.87586 * 359.73945 * 3 2 1 34 34 H 1.07997 * 120.17938 * 359.73786 * 5 4 3 35 35 H 1.07996 * 119.53732 * 179.97438 * 6 5 4 36 36 H 1.08005 * 119.45818 * 180.02562 * 7 6 5 37 37 H 1.08003 * 120.13194 * 179.97438 * 8 7 6 38 38 H 0.96999 * 120.00277 * 359.97438 * 14 12 11 39 39 H 1.09008 * 109.47053 * 64.98250 * 17 15 14 40 40 H 1.08997 * 109.47672 * 184.98263 * 17 15 14 41 41 H 1.09000 * 109.47385 * 304.99240 * 17 15 14 42 42 H 1.09000 * 112.94251 * 293.41732 * 18 15 14 43 43 H 1.08995 * 113.77368 * 336.34447 * 19 18 15 44 44 H 1.08998 * 113.77197 * 107.74813 * 19 18 15 45 45 H 0.96995 * 120.00015 * 180.02562 * 24 23 21 46 46 H 1.08998 * 113.76712 * 221.05516 * 29 20 19 47 47 H 1.08999 * 113.76842 * 89.66700 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5980 1.1359 -0.0038 5 6 4.3654 2.3120 -0.0073 6 6 5.7243 2.2293 -0.0060 7 6 6.3668 0.9919 -0.0004 8 6 5.6568 -0.1680 0.0035 9 6 4.2492 -0.1254 0.0012 10 7 3.5287 -1.2463 0.0054 11 6 2.2101 -1.2134 0.0039 12 6 1.4537 -2.4887 0.0093 13 8 0.2434 -2.4767 0.1140 14 7 2.1090 -3.6612 -0.1020 15 6 1.3617 -4.9212 -0.0972 16 1 0.5061 -4.8337 0.5726 17 6 0.8713 -5.2289 -1.5134 18 6 2.2724 -6.0525 0.3842 19 6 1.5100 -7.3052 0.8526 20 7 2.4753 -7.3528 1.9680 21 6 2.9487 -8.3438 2.7858 22 1 3.6756 -8.1119 3.5502 23 6 2.4952 -9.6467 2.6317 24 7 1.6097 -9.9294 1.6999 25 14 3.1415 -10.9988 3.7469 26 1 2.8198 -10.6715 5.1592 27 1 2.5044 -12.2892 3.3808 28 1 4.6138 -11.1102 3.5877 29 6 2.7254 -5.9033 1.8479 30 1 -0.3633 -0.1203 1.0206 31 1 -0.3633 0.9441 -0.4061 32 1 -0.3634 -0.8237 -0.6145 33 1 1.6675 2.1256 -0.0042 34 1 3.8803 3.2768 -0.0114 35 1 6.3127 3.1349 -0.0092 36 1 7.4462 0.9538 0.0009 37 1 6.1705 -1.1181 0.0074 38 1 3.0753 -3.6708 -0.1859 39 1 1.7278 -5.4038 -2.1645 40 1 0.2415 -6.1183 -1.4947 41 1 0.2953 -4.3836 -1.8901 42 1 3.0871 -6.2657 -0.3078 43 1 0.4857 -7.1044 1.1664 44 1 1.5886 -8.1492 0.1673 45 1 1.2925 -10.8397 1.5924 46 1 3.7743 -5.6279 1.9573 47 1 2.0581 -5.2907 2.4541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970182643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:11 Heat of formation + Delta-G solvation = 73.978714 kcal Electronic energy + Delta-G solvation = -28528.987059 eV Core-core repulsion = 24678.427246 eV Total energy + Delta-G solvation = -3850.559814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36453 -39.71857 -38.18881 -37.13786 -35.09530 -34.19716 -32.15636 -31.90504 -31.08111 -29.91269 -27.44326 -27.27546 -25.67153 -24.64253 -23.91179 -22.84921 -22.37878 -21.65521 -20.41178 -19.38372 -18.25224 -18.00264 -16.98504 -16.73210 -15.89284 -15.63138 -15.46577 -14.88425 -14.73300 -14.68876 -14.32625 -14.02470 -13.93441 -13.59842 -13.42819 -13.29101 -13.25703 -13.00909 -12.51905 -12.18723 -12.03418 -11.98273 -11.88838 -11.79866 -11.52930 -11.35008 -11.18572 -10.84778 -10.66910 -10.65189 -10.34228 -10.16567 -9.93412 -9.77526 -9.44862 -9.34152 -9.05711 -8.76835 -8.72726 -8.55158 -6.83234 -5.72976 -3.04777 -0.09345 0.38186 1.62565 2.22770 3.10487 3.13970 3.42201 3.46057 3.47419 3.81248 3.87001 4.21087 4.39925 4.42894 4.48894 4.59127 4.75667 4.79728 4.96514 5.02864 5.16298 5.22422 5.35212 5.42583 5.44475 5.58018 5.61161 5.65351 5.65856 5.70769 5.80654 5.86472 6.00301 6.03420 6.05395 6.09632 6.11801 6.26483 6.32523 6.41499 6.49679 6.50894 6.64182 6.68237 6.84771 7.26519 7.36271 7.41158 7.60028 7.72433 8.02587 8.27954 9.08977 9.74812 10.64796 11.44311 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002447 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.298950 B =11439.203162 C =12658.216696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.074 4.074 4 C -0.082 4.082 5 C -0.104 4.104 6 C -0.107 4.107 7 C -0.109 4.109 8 C -0.081 4.081 9 C 0.117 3.883 10 N -0.437 5.437 11 C 0.119 3.881 12 C 0.565 3.435 13 O -0.528 6.528 14 N -0.695 5.695 15 C 0.148 3.852 16 H 0.090 0.910 17 C -0.157 4.157 18 C -0.147 4.147 19 C 0.177 3.823 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.125 3.875 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.409 0.591 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.254 0.746 46 H 0.041 0.959 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 26.885 -7.912 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.099 4.099 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.129 4.129 8 C -0.099 4.099 9 C -0.006 4.006 10 N -0.148 5.148 11 C -0.035 4.035 12 C 0.349 3.651 13 O -0.405 6.405 14 N -0.344 5.344 15 C 0.044 3.956 16 H 0.108 0.892 17 C -0.215 4.215 18 C -0.167 4.167 19 C 0.051 3.949 20 N -0.338 5.338 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.001 4.001 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.162 0.838 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.244 0.756 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.301 25.703 -7.705 27.176 hybrid contribution 0.446 0.130 0.726 0.862 sum 4.747 25.833 -6.979 27.177 Atomic orbital electron populations 1.21088 0.88698 1.03291 1.04231 1.20577 0.98663 0.92060 0.97428 1.21350 0.92393 0.98472 0.97734 1.18967 0.94231 0.94560 1.00665 1.20985 0.94105 0.97061 1.00168 1.20998 0.94653 0.98114 0.98766 1.20929 1.00578 0.92000 0.99421 1.20924 0.91058 0.99627 0.98304 1.18843 0.94201 0.87677 0.99918 1.67838 1.06527 1.30646 1.09810 1.21350 0.89537 0.94104 0.98504 1.17865 0.86719 0.83034 0.77436 1.90727 1.12999 1.86504 1.50245 1.46045 1.11661 1.05270 1.71443 1.21208 0.95271 0.81653 0.97477 0.89238 1.22109 1.01293 1.01925 0.96203 1.23862 0.99442 0.96127 0.97230 1.22186 0.91399 0.92257 0.89095 1.45932 1.47450 1.01586 1.38842 1.18977 1.18931 0.86441 1.10635 0.90389 1.24776 0.99269 0.97169 0.99301 1.69796 1.33566 1.19005 1.34582 0.86205 0.78199 0.81338 0.80048 1.21243 1.21554 1.21115 1.22538 0.97825 0.87485 0.92228 0.90306 0.92383 0.88001 0.83841 0.85135 0.85423 0.85088 0.84265 0.75587 0.92655 0.91000 0.92820 0.89250 0.95453 0.90678 0.93602 0.94062 0.95048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.68 36.00 0.31 -0.90 16 2 C -0.08 -0.97 5.89 -104.49 -0.62 -1.58 16 3 C -0.07 -0.69 9.50 -39.26 -0.37 -1.06 16 4 C -0.08 -0.82 5.75 -106.72 -0.61 -1.43 16 5 C -0.10 -0.77 9.77 -39.51 -0.39 -1.15 16 6 C -0.11 -0.69 9.96 -39.89 -0.40 -1.09 16 7 C -0.11 -0.78 9.94 -39.94 -0.40 -1.18 16 8 C -0.08 -0.76 9.99 -39.41 -0.39 -1.15 16 9 C 0.12 1.36 6.61 -84.85 -0.56 0.80 16 10 N -0.44 -5.72 9.48 -7.54 -0.07 -5.79 16 11 C 0.12 1.60 6.75 -82.96 -0.56 1.04 16 12 C 0.57 8.43 7.71 -12.13 -0.09 8.33 16 13 O -0.53 -8.73 12.88 5.37 0.07 -8.66 16 14 N -0.69 -10.06 4.93 -54.62 -0.27 -10.33 16 15 C 0.15 2.36 2.29 -67.93 -0.16 2.20 16 16 H 0.09 1.59 7.48 -51.93 -0.39 1.20 16 17 C -0.16 -2.24 9.43 37.16 0.35 -1.89 16 18 C -0.15 -2.71 3.36 -89.70 -0.30 -3.01 16 19 C 0.18 4.15 7.02 -2.97 -0.02 4.13 16 20 N -0.61 -16.04 3.70 -177.89 -0.66 -16.69 16 21 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.64 11.38 55.49 0.63 -27.01 16 25 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.13 2.63 8.37 -2.97 -0.02 2.61 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 32 H 0.10 1.25 5.81 -51.93 -0.30 0.95 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.41 5.53 7.92 -40.82 -0.32 5.21 16 39 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 44 H 0.07 1.93 7.15 -51.93 -0.37 1.56 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -33.25 388.27 -10.79 -44.04 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.84 Total: 3.37 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.49 Total: -2.23 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.37 Total: -59.82 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.25 -10.79 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970182643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.017 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds