Wall clock time and date at job start Tue Mar 31 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36538 * 120.09340 * 2 1 4 4 C 1.40718 * 118.24151 * 180.17450 * 3 2 1 5 5 C 1.40433 * 121.27335 * 179.84209 * 4 3 2 6 6 C 1.36134 * 119.64497 * 179.76352 * 5 4 3 7 7 C 1.39436 * 120.91855 * 359.95864 * 6 5 4 8 8 C 1.35990 * 121.09047 * 0.02562 * 7 6 5 9 9 C 1.40831 * 119.73692 * 0.02562 * 8 7 6 10 10 N 1.33246 * 120.99737 * 180.02562 * 9 8 7 11 11 C 1.31901 * 121.30189 * 179.97438 * 10 9 8 12 12 C 1.48274 * 119.24213 * 180.02562 * 11 10 9 13 13 O 1.21494 * 120.00369 * 174.21695 * 12 11 10 14 14 N 1.34779 * 119.99744 * 354.21455 * 12 11 10 15 15 C 1.46495 * 119.99920 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.47109 * 324.99526 * 15 14 12 17 17 C 1.52996 * 109.47731 * 84.99648 * 15 14 12 18 18 C 1.53001 * 109.47142 * 205.00039 * 15 14 12 19 19 C 1.53941 * 113.74287 * 161.68667 * 18 15 14 20 20 N 1.47586 * 86.11973 * 222.04557 * 19 18 15 21 21 C 1.36931 * 134.49542 * 204.64019 * 20 19 18 22 22 H 1.08002 * 119.99911 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00140 * 0.02562 * 21 20 19 24 24 N 1.31620 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00153 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46713 * 59.99796 * 25 23 21 27 27 H 1.48499 * 109.47393 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47326 * 300.00194 * 25 23 21 29 29 C 1.47585 * 91.00857 * 24.63994 * 20 19 18 30 30 H 1.09000 * 109.47125 * 263.27942 * 1 2 3 31 31 H 1.09005 * 109.47008 * 23.27518 * 1 2 3 32 32 H 1.09002 * 109.47454 * 143.27552 * 1 2 3 33 33 H 1.08000 * 120.87586 * 359.73945 * 3 2 1 34 34 H 1.07997 * 120.17938 * 359.73786 * 5 4 3 35 35 H 1.07996 * 119.53732 * 179.97438 * 6 5 4 36 36 H 1.08005 * 119.45818 * 180.02562 * 7 6 5 37 37 H 1.08003 * 120.13194 * 179.97438 * 8 7 6 38 38 H 0.96999 * 120.00277 * 359.97438 * 14 12 11 39 39 H 1.09008 * 109.47053 * 64.98250 * 17 15 14 40 40 H 1.08997 * 109.47672 * 184.98263 * 17 15 14 41 41 H 1.09000 * 109.47385 * 304.99240 * 17 15 14 42 42 H 1.09000 * 112.94251 * 293.41732 * 18 15 14 43 43 H 1.08995 * 113.77368 * 336.34447 * 19 18 15 44 44 H 1.08998 * 113.77197 * 107.74813 * 19 18 15 45 45 H 0.96995 * 120.00015 * 180.02562 * 24 23 21 46 46 H 1.08998 * 113.76712 * 221.05516 * 29 20 19 47 47 H 1.08999 * 113.76842 * 89.66700 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5980 1.1359 -0.0038 5 6 4.3654 2.3120 -0.0073 6 6 5.7243 2.2293 -0.0060 7 6 6.3668 0.9919 -0.0004 8 6 5.6568 -0.1680 0.0035 9 6 4.2492 -0.1254 0.0012 10 7 3.5287 -1.2463 0.0054 11 6 2.2101 -1.2134 0.0039 12 6 1.4537 -2.4887 0.0093 13 8 0.2434 -2.4767 0.1140 14 7 2.1090 -3.6612 -0.1020 15 6 1.3617 -4.9212 -0.0972 16 1 0.5061 -4.8337 0.5726 17 6 0.8713 -5.2289 -1.5134 18 6 2.2724 -6.0525 0.3842 19 6 1.5100 -7.3052 0.8526 20 7 2.4753 -7.3528 1.9680 21 6 2.9487 -8.3438 2.7858 22 1 3.6756 -8.1119 3.5502 23 6 2.4952 -9.6467 2.6317 24 7 1.6097 -9.9294 1.6999 25 14 3.1415 -10.9988 3.7469 26 1 2.8198 -10.6715 5.1592 27 1 2.5044 -12.2892 3.3808 28 1 4.6138 -11.1102 3.5877 29 6 2.7254 -5.9033 1.8479 30 1 -0.3633 -0.1203 1.0206 31 1 -0.3633 0.9441 -0.4061 32 1 -0.3634 -0.8237 -0.6145 33 1 1.6675 2.1256 -0.0042 34 1 3.8803 3.2768 -0.0114 35 1 6.3127 3.1349 -0.0092 36 1 7.4462 0.9538 0.0009 37 1 6.1705 -1.1181 0.0074 38 1 3.0753 -3.6708 -0.1859 39 1 1.7278 -5.4038 -2.1645 40 1 0.2415 -6.1183 -1.4947 41 1 0.2953 -4.3836 -1.8901 42 1 3.0871 -6.2657 -0.3078 43 1 0.4857 -7.1044 1.1664 44 1 1.5886 -8.1492 0.1673 45 1 1.2925 -10.8397 1.5924 46 1 3.7743 -5.6279 1.9573 47 1 2.0581 -5.2907 2.4541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970182643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:10 Heat of formation + Delta-G solvation = 53.942529 kcal Electronic energy + Delta-G solvation = -28529.855894 eV Core-core repulsion = 24678.427246 eV Total energy + Delta-G solvation = -3851.428648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17755 -40.88455 -39.72478 -37.95709 -36.39156 -35.10988 -34.13056 -32.64352 -32.18386 -30.88424 -29.34513 -28.01906 -26.80109 -26.24278 -25.60234 -23.63378 -23.05929 -23.00244 -21.64699 -20.96919 -19.22234 -18.91519 -18.75272 -17.68197 -17.22215 -16.85546 -16.54995 -16.40204 -15.86783 -15.59409 -15.44057 -15.24203 -15.14317 -14.84532 -14.63437 -14.28573 -14.09615 -13.95248 -13.89683 -13.45255 -13.30850 -13.17576 -13.06602 -12.90656 -12.67359 -12.61475 -12.56755 -12.46958 -12.40156 -12.05566 -11.80754 -11.58469 -11.37371 -11.24108 -11.05579 -10.87050 -10.45132 -10.12889 -9.68104 -9.19728 -8.93867 -7.91443 -5.25396 -0.83756 -0.33774 0.93247 1.40399 1.44119 1.48067 1.54257 2.00587 2.21507 2.46540 2.96501 3.08326 3.28222 3.37349 3.53712 3.63950 3.72654 3.75572 3.90398 3.93963 4.11945 4.23187 4.25154 4.37634 4.41798 4.42918 4.54819 4.63975 4.73854 4.77922 4.79817 4.84001 4.87205 4.91863 4.96436 5.04944 5.08315 5.11743 5.22826 5.28798 5.32559 5.39431 5.47351 5.50206 5.52224 5.61639 5.63090 5.88217 5.93053 6.38940 6.70407 6.91182 7.13450 7.59061 8.55264 9.25378 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002447 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.298950 B =11439.203162 C =12658.216696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.105 4.105 3 C -0.059 4.059 4 C -0.095 4.095 5 C -0.104 4.104 6 C -0.102 4.102 7 C -0.097 4.097 8 C -0.108 4.108 9 C 0.091 3.909 10 N -0.456 5.456 11 C 0.094 3.906 12 C 0.564 3.436 13 O -0.550 6.550 14 N -0.692 5.692 15 C 0.161 3.839 16 H 0.069 0.931 17 C -0.150 4.150 18 C -0.110 4.110 19 C 0.174 3.826 20 N -0.643 5.643 21 C -0.240 4.240 22 H 0.081 0.919 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.981 3.019 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.274 1.274 29 C 0.127 3.873 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.180 0.820 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.138 0.862 38 H 0.414 0.586 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.102 0.898 43 H 0.015 0.985 44 H 0.049 0.951 45 H 0.250 0.750 46 H 0.055 0.945 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 30.208 -8.108 31.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.097 4.097 5 C -0.123 4.123 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.126 4.126 9 C -0.033 4.033 10 N -0.167 5.167 11 C -0.059 4.059 12 C 0.349 3.651 13 O -0.429 6.429 14 N -0.342 5.342 15 C 0.056 3.944 16 H 0.087 0.913 17 C -0.208 4.208 18 C -0.130 4.130 19 C 0.048 3.952 20 N -0.369 5.369 21 C -0.368 4.368 22 H 0.099 0.901 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.200 1.200 29 C 0.002 3.998 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.176 0.824 37 H 0.156 0.844 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.336 29.060 -7.902 30.774 hybrid contribution -0.044 -0.716 0.799 1.074 sum 6.292 28.344 -7.103 29.890 Atomic orbital electron populations 1.20973 0.88387 1.03877 1.03311 1.20689 0.99000 0.92209 0.98904 1.21739 0.92351 0.99009 0.95388 1.19283 0.94829 0.94969 1.00628 1.21375 0.94525 0.97283 0.99095 1.21466 0.94755 0.99038 0.96742 1.21339 1.01972 0.91529 0.96810 1.21077 0.90482 1.00789 1.00268 1.19269 0.95122 0.88106 1.00773 1.67734 1.06470 1.32034 1.10468 1.21145 0.89950 0.93785 1.01022 1.18191 0.86619 0.83627 0.76620 1.90715 1.14001 1.86977 1.51172 1.45896 1.11781 1.04728 1.71754 1.20879 0.93947 0.81545 0.98071 0.91288 1.22039 1.01807 1.01873 0.95107 1.23462 0.98833 0.94529 0.96177 1.22080 0.91015 0.93661 0.88397 1.46353 1.48033 1.03383 1.39141 1.19390 1.18990 0.87531 1.10908 0.90077 1.25658 0.99883 0.99480 1.00980 1.69989 1.34900 1.19076 1.36176 0.85125 0.77929 0.77954 0.78147 1.20572 1.21796 1.19954 1.22646 0.98611 0.84883 0.93667 0.91292 0.89434 0.90379 0.80243 0.81982 0.81938 0.82395 0.84436 0.74953 0.91213 0.91311 0.92485 0.87989 0.96759 0.93293 0.94119 0.92642 0.95137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.68 71.23 0.62 -1.63 16 2 C -0.11 -2.36 5.89 -19.78 -0.12 -2.48 16 3 C -0.06 -0.98 9.50 22.48 0.21 -0.77 16 4 C -0.10 -1.69 5.75 -21.22 -0.12 -1.81 16 5 C -0.10 -1.11 9.77 22.31 0.22 -0.89 16 6 C -0.10 -0.88 9.96 22.07 0.22 -0.66 16 7 C -0.10 -1.08 9.94 22.04 0.22 -0.86 16 8 C -0.11 -1.90 9.99 22.38 0.22 -1.67 16 9 C 0.09 2.05 6.61 40.48 0.27 2.32 16 10 N -0.46 -12.12 9.48 -177.78 -1.69 -13.80 16 11 C 0.09 2.57 6.75 42.29 0.29 2.85 16 12 C 0.56 17.45 7.71 86.91 0.67 18.12 16 13 O -0.55 -19.06 12.88 -3.70 -0.05 -19.11 16 14 N -0.69 -20.49 4.93 -445.02 -2.19 -22.68 16 15 C 0.16 5.23 2.29 44.99 0.10 5.33 16 16 H 0.07 2.57 7.48 -2.39 -0.02 2.55 16 17 C -0.15 -4.30 9.43 71.98 0.68 -3.63 16 18 C -0.11 -4.14 3.36 -10.14 -0.03 -4.17 16 19 C 0.17 8.52 7.02 86.48 0.61 9.13 16 20 N -0.64 -34.49 3.70 -716.72 -2.65 -37.14 16 21 C -0.24 -14.00 10.70 84.03 0.90 -13.10 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 24 N -0.95 -58.73 11.38 21.65 0.25 -58.49 16 25 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 29 C 0.13 5.40 8.37 86.48 0.72 6.13 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.21 8.04 -2.38 -0.02 1.19 16 32 H 0.08 2.00 5.81 -2.39 -0.01 1.98 16 33 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 36 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.41 11.36 7.92 -92.71 -0.73 10.63 16 39 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 43 H 0.01 0.74 8.03 -2.39 -0.02 0.72 16 44 H 0.05 2.63 7.15 -2.39 -0.02 2.62 16 45 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -75.15 388.27 2.09 -73.06 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.25 Total: 20.59 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.14 Total: 8.75 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -6.28 Total: -132.12 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.15 2.09 -73.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970182643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.998 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds