Wall clock time and date at job start Tue Mar 31 2020 22:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39311 * 119.12290 * 2 1 4 4 C 1.36581 * 119.90876 * 180.02562 * 3 2 1 5 5 C 1.40884 * 118.15761 * 359.91947 * 4 3 2 6 6 C 1.40177 * 121.22695 * 180.08607 * 5 4 3 7 7 C 1.38545 * 119.40617 * 179.97438 * 6 5 4 8 8 C 1.47771 * 119.80619 * 180.02562 * 7 6 5 9 9 O 1.21570 * 119.99579 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00227 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00022 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47045 * 34.99609 * 11 10 8 13 13 C 1.53000 * 109.47136 * 274.99616 * 11 10 8 14 14 C 1.53004 * 109.47141 * 154.99914 * 11 10 8 15 15 C 1.53499 * 114.20194 * 295.68016 * 14 11 10 16 16 N 1.47073 * 87.98271 * 220.34656 * 15 14 11 17 17 C 1.36942 * 136.05527 * 207.08568 * 16 15 14 18 18 H 1.07994 * 120.00082 * 7.51165 * 17 16 15 19 19 C 1.38805 * 119.99575 * 187.50622 * 17 16 15 20 20 N 1.31620 * 120.00031 * 174.40324 * 19 17 16 21 21 Si 1.86807 * 120.00388 * 354.40343 * 19 17 16 22 22 H 1.48500 * 109.46966 * 174.95506 * 21 19 17 23 23 H 1.48493 * 109.47091 * 294.95681 * 21 19 17 24 24 H 1.48504 * 109.46855 * 54.95714 * 21 19 17 25 25 C 1.47068 * 87.88530 * 27.34485 * 16 15 14 26 26 C 1.40631 * 120.39265 * 0.26765 * 7 6 5 27 27 C 1.35699 * 120.91813 * 359.46420 * 26 7 6 28 28 C 1.40758 * 120.11222 * 0.51271 * 27 26 7 29 29 N 1.31126 * 119.11073 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47155 * 270.02323 * 1 2 3 31 31 H 1.09002 * 109.46619 * 30.01846 * 1 2 3 32 32 H 1.09000 * 109.47380 * 150.02019 * 1 2 3 33 33 H 1.08000 * 120.04223 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.91683 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.29816 * 359.97438 * 6 5 4 36 36 H 0.97002 * 120.00125 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.46666 * 64.63553 * 13 11 10 38 38 H 1.08999 * 109.46923 * 184.63216 * 13 11 10 39 39 H 1.08998 * 109.47162 * 304.63827 * 13 11 10 40 40 H 1.08999 * 113.41397 * 68.87868 * 14 11 10 41 41 H 1.08997 * 113.46896 * 105.57052 * 15 14 11 42 42 H 1.09003 * 113.52350 * 335.12944 * 15 14 11 43 43 H 0.97005 * 119.99470 * 355.00821 * 20 19 17 44 44 H 1.08994 * 113.47031 * 87.43931 * 25 16 15 45 45 H 1.09002 * 113.46631 * 217.88470 * 25 16 15 46 46 H 1.07996 * 119.54032 * 179.72809 * 26 7 6 47 47 H 1.07998 * 119.94407 * 180.27718 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.2170 0.0000 4 6 3.5507 1.2357 -0.0005 5 6 4.2325 0.0029 0.0007 6 6 5.6332 -0.0530 0.0020 7 6 6.2648 -1.2861 0.0037 8 6 7.7409 -1.3553 0.0057 9 8 8.3973 -0.3320 0.0054 10 7 8.3594 -2.5527 0.0069 11 6 9.8228 -2.6212 0.0083 12 1 10.2246 -1.7970 0.5977 13 6 10.3395 -2.5203 -1.4283 14 6 10.2705 -3.9507 0.6190 15 6 9.8985 -4.1206 2.0985 16 7 11.2201 -4.7312 2.3070 17 6 11.7613 -5.6365 3.1804 18 1 11.1241 -6.1659 3.8732 19 6 13.1289 -5.8738 3.1752 20 7 13.6641 -6.6594 4.0855 21 14 14.2100 -5.0780 1.8761 22 1 15.6343 -5.3884 2.1595 23 1 13.8452 -5.6064 0.5371 24 1 14.0100 -3.6067 1.8990 25 6 11.7064 -3.9367 1.1689 26 6 5.5095 -2.4724 -0.0016 27 6 4.1530 -2.4353 0.0025 28 6 3.4804 -1.1989 0.0012 29 7 2.1449 -1.1456 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3632 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6314 2.1443 0.0004 34 1 4.0928 2.1697 -0.0010 35 1 6.2148 0.8571 0.0017 36 1 7.8356 -3.3692 0.0068 37 1 10.0915 -1.5400 -1.8355 38 1 11.4213 -2.6536 -1.4355 39 1 9.8737 -3.2951 -2.0372 40 1 10.0350 -4.8143 -0.0031 41 1 9.0709 -4.8110 2.2615 42 1 9.7690 -3.1755 2.6258 43 1 13.1157 -7.0145 4.8026 44 1 12.0537 -2.9427 1.4503 45 1 12.4188 -4.4704 0.5398 46 1 6.0161 -3.4261 -0.0046 47 1 3.5886 -3.3561 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970625593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:49 Heat of formation + Delta-G solvation = 75.758177 kcal Electronic energy + Delta-G solvation = -28013.887362 eV Core-core repulsion = 24163.404712 eV Total energy + Delta-G solvation = -3850.482650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32981 -40.06994 -38.68548 -37.24257 -35.13821 -33.93727 -32.74484 -32.29040 -30.75283 -30.45472 -28.32263 -27.82093 -25.35251 -24.46193 -24.25073 -23.33214 -22.44061 -21.22916 -20.69654 -19.62954 -18.49801 -18.12572 -17.50720 -16.85272 -16.27651 -16.06578 -15.29442 -15.27081 -14.92139 -14.80359 -14.57536 -14.22637 -13.96449 -13.82710 -13.70481 -13.44755 -13.38178 -13.26680 -13.00313 -12.66783 -12.44633 -12.35030 -12.00108 -11.83612 -11.79465 -11.62411 -11.27714 -11.08566 -10.99503 -10.73858 -10.36024 -10.18450 -10.05074 -9.90818 -9.24497 -9.17215 -9.12771 -8.99847 -8.90850 -8.61596 -7.17289 -6.30065 -3.24147 -0.14528 0.28056 1.53071 2.09964 3.02548 3.10257 3.40056 3.44569 3.64922 3.70982 3.73320 4.13374 4.22499 4.36011 4.43177 4.59483 4.60449 4.67427 4.70906 4.79942 4.93916 4.96286 5.06562 5.06956 5.12216 5.36611 5.38284 5.44476 5.47832 5.49028 5.52776 5.61320 5.62664 5.73374 5.84664 5.87322 5.90695 6.03829 6.10467 6.15125 6.21679 6.24158 6.30606 6.35783 6.36627 6.53397 6.89318 7.10692 7.44925 7.50570 8.12622 8.22949 8.96831 9.49321 10.35701 11.19795 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.002083 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.908012 B =13440.954322 C =14046.002557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.166 3.834 3 C -0.178 4.178 4 C -0.043 4.043 5 C -0.120 4.120 6 C -0.024 4.024 7 C -0.133 4.133 8 C 0.558 3.442 9 O -0.538 6.538 10 N -0.712 5.712 11 C 0.152 3.848 12 H 0.091 0.909 13 C -0.160 4.160 14 C -0.142 4.142 15 C 0.129 3.871 16 N -0.628 5.628 17 C -0.304 4.304 18 H 0.082 0.918 19 C -0.026 4.026 20 N -0.934 5.934 21 Si 1.070 2.930 22 H -0.295 1.295 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.109 3.891 26 C -0.072 4.072 27 C -0.099 4.099 28 C 0.150 3.850 29 N -0.480 5.480 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.399 0.601 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.135 0.865 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.656 15.598 -13.099 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.014 3.986 3 C -0.198 4.198 4 C -0.068 4.068 5 C -0.122 4.122 6 C -0.044 4.044 7 C -0.136 4.136 8 C 0.345 3.655 9 O -0.417 6.417 10 N -0.363 5.363 11 C 0.047 3.953 12 H 0.109 0.891 13 C -0.219 4.219 14 C -0.162 4.162 15 C 0.003 3.997 16 N -0.356 5.356 17 C -0.430 4.430 18 H 0.100 0.900 19 C -0.224 4.224 20 N -0.576 5.576 21 Si 0.902 3.098 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.213 1.213 25 C -0.017 4.017 26 C -0.092 4.092 27 C -0.118 4.118 28 C 0.028 3.972 29 N -0.190 5.190 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.235 0.765 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.153 0.847 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.865 15.330 -13.465 31.399 hybrid contribution -1.368 0.323 0.741 1.589 sum -25.234 15.654 -12.725 32.306 Atomic orbital electron populations 1.20817 0.88447 1.03829 1.03497 1.21589 0.97296 0.88210 0.91555 1.21734 0.94998 0.99372 1.03709 1.21575 0.94523 0.97340 0.93388 1.18798 0.94365 0.94355 1.04657 1.21443 0.92241 0.98135 0.92564 1.19993 0.93464 0.94090 1.06041 1.18147 0.86937 0.83918 0.76501 1.90777 1.66652 1.34173 1.50066 1.46003 1.08076 1.07903 1.74304 1.21055 0.78339 0.98882 0.97004 0.89057 1.22139 1.01845 1.01890 0.95980 1.23606 0.99617 0.95860 0.97156 1.22305 0.90374 0.95938 0.91111 1.45968 1.07721 1.46145 1.35781 1.20152 0.92905 1.15735 1.14250 0.89990 1.25743 0.94084 0.99959 1.02654 1.70920 1.37682 1.34966 1.14009 0.83728 0.75734 0.75684 0.74663 1.22187 1.22026 1.21302 1.22735 0.93757 0.95697 0.89521 1.20987 0.93829 0.97748 0.96675 1.20670 0.93733 0.96637 1.00735 1.18970 0.89113 0.92914 0.96227 1.67912 1.08319 1.28768 1.13964 0.89910 0.90361 0.90134 0.84278 0.83888 0.83677 0.76522 0.92381 0.91165 0.92472 0.88233 0.93880 0.94549 0.92963 0.93559 0.92717 0.84691 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.14 36.01 0.37 -0.15 16 2 C 0.17 1.34 6.78 -82.49 -0.56 0.78 16 3 C -0.18 -1.18 9.64 -39.78 -0.38 -1.56 16 4 C -0.04 -0.32 9.89 -39.18 -0.39 -0.71 16 5 C -0.12 -1.19 5.74 -106.82 -0.61 -1.80 16 6 C -0.02 -0.25 9.35 -38.74 -0.36 -0.61 16 7 C -0.13 -1.45 5.87 -104.98 -0.62 -2.07 16 8 C 0.56 7.30 7.73 -12.36 -0.10 7.21 16 9 O -0.54 -8.79 15.97 5.30 0.08 -8.70 16 10 N -0.71 -8.45 4.89 -54.77 -0.27 -8.72 16 11 C 0.15 2.10 2.35 -67.93 -0.16 1.94 16 12 H 0.09 1.45 7.41 -51.93 -0.38 1.06 16 13 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 14 C -0.14 -2.29 3.52 -89.96 -0.32 -2.61 16 15 C 0.13 2.48 8.12 -8.49 -0.07 2.41 16 16 N -0.63 -15.42 3.69 -184.56 -0.68 -16.10 16 17 C -0.30 -8.84 11.08 -15.06 -0.17 -9.00 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 20 N -0.93 -29.70 13.70 55.49 0.76 -28.93 16 21 Si 1.07 26.86 25.16 -169.99 -4.28 22.58 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 23 H -0.29 -6.86 6.51 56.52 0.37 -6.49 16 24 H -0.29 -6.72 6.21 56.52 0.35 -6.37 16 25 C 0.11 2.25 5.27 -8.36 -0.04 2.21 16 26 C -0.07 -0.65 9.44 -39.59 -0.37 -1.03 16 27 C -0.10 -0.94 9.95 -39.54 -0.39 -1.33 16 28 C 0.15 1.60 6.61 -84.78 -0.56 1.04 16 29 N -0.48 -5.05 10.23 -7.16 -0.07 -5.12 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.15 1.43 7.62 -52.48 -0.40 1.03 16 36 H 0.40 3.77 6.59 -40.82 -0.27 3.50 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 44 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 45 H 0.06 1.16 4.72 -51.93 -0.25 0.92 16 46 H 0.14 0.91 6.35 -52.49 -0.33 0.58 16 47 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -36.12 384.23 -9.89 -46.01 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.75 Total: 0.98 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -4.48 Total: -7.78 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.26 Total: -58.88 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.28 Total: 22.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.12 -9.89 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970625593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.768 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds