Wall clock time and date at job start Tue Mar 31 2020 22:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39312 * 119.11615 * 2 1 4 4 C 1.36580 * 119.90649 * 180.02562 * 3 2 1 5 5 C 1.40892 * 118.15611 * 359.92168 * 4 3 2 6 6 C 1.40178 * 121.22403 * 180.08798 * 5 4 3 7 7 C 1.38553 * 119.40409 * 179.97438 * 6 5 4 8 8 C 1.47767 * 119.80298 * 179.97438 * 7 6 5 9 9 O 1.21562 * 120.00555 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99552 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99698 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47204 * 324.99663 * 11 10 8 13 13 C 1.52994 * 109.47478 * 85.00105 * 11 10 8 14 14 C 1.53007 * 109.47063 * 205.00339 * 11 10 8 15 15 C 1.53943 * 113.73967 * 161.99682 * 14 11 10 16 16 N 1.47812 * 86.03288 * 222.07840 * 15 14 11 17 17 C 1.36941 * 134.45949 * 204.64456 * 16 15 14 18 18 H 1.07998 * 120.00363 * 179.86974 * 17 16 15 19 19 C 1.38817 * 119.99599 * 359.86590 * 17 16 15 20 20 N 1.31619 * 119.99967 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47475 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46859 * 120.00247 * 21 19 17 24 24 H 1.48498 * 109.47638 * 240.00248 * 21 19 17 25 25 C 1.47584 * 91.05227 * 24.55205 * 16 15 14 26 26 C 1.40631 * 120.39146 * 0.26926 * 7 6 5 27 27 C 1.35702 * 120.91633 * 359.45637 * 26 7 6 28 28 C 1.40750 * 120.11554 * 0.52301 * 27 26 7 29 29 N 1.31122 * 119.11415 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47628 * 270.02126 * 1 2 3 31 31 H 1.09004 * 109.47037 * 30.02532 * 1 2 3 32 32 H 1.09004 * 109.46704 * 150.01831 * 1 2 3 33 33 H 1.08001 * 120.04774 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.92154 * 179.97438 * 4 3 2 35 35 H 1.08004 * 120.30337 * 359.94274 * 6 5 4 36 36 H 0.96998 * 120.00689 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47358 * 55.80638 * 13 11 10 38 38 H 1.09001 * 109.46924 * 295.80963 * 13 11 10 39 39 H 1.08997 * 109.47324 * 175.80826 * 13 11 10 40 40 H 1.09000 * 112.94115 * 293.58427 * 14 11 10 41 41 H 1.08997 * 113.77139 * 336.34419 * 15 14 11 42 42 H 1.09007 * 113.76732 * 107.74921 * 15 14 11 43 43 H 0.97001 * 119.99789 * 179.97438 * 20 19 17 44 44 H 1.08998 * 113.77081 * 221.14893 * 25 16 15 45 45 H 1.08993 * 113.87010 * 89.76485 * 25 16 15 46 46 H 1.07997 * 119.54150 * 179.72904 * 26 7 6 47 47 H 1.08003 * 119.94025 * 180.28072 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0030 0.0006 6 6 5.6331 -0.0527 0.0020 7 6 6.2649 -1.2858 0.0037 8 6 7.7409 -1.3548 0.0046 9 8 8.3973 -0.3317 0.0034 10 7 8.3595 -2.5523 0.0067 11 6 9.8229 -2.6207 0.0082 12 1 10.2258 -1.7976 -0.5821 13 6 10.3369 -2.5171 1.4454 14 6 10.2718 -3.9513 -0.5994 15 6 11.7435 -3.9612 -1.0509 16 7 11.2639 -4.6803 -2.2500 17 6 11.8401 -5.5383 -3.1483 18 1 11.2554 -5.9407 -3.9623 19 6 13.1759 -5.8908 -3.0127 20 7 13.8884 -5.4007 -2.0205 21 14 13.9618 -7.0617 -4.2377 22 1 12.9547 -7.4678 -5.2507 23 1 15.0968 -6.3829 -4.9133 24 1 14.4590 -8.2650 -3.5235 25 6 9.9146 -4.1044 -2.0890 26 6 5.5097 -2.4721 -0.0017 27 6 4.1531 -2.4351 0.0024 28 6 3.4804 -1.1988 0.0011 29 7 2.1450 -1.1456 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6313 2.1444 0.0004 34 1 4.0927 2.1700 -0.0010 35 1 6.2147 0.8574 0.0013 36 1 7.8358 -3.3688 0.0073 37 1 9.8761 -3.2959 2.0532 38 1 10.0812 -1.5391 1.8531 39 1 11.4196 -2.6426 1.4540 40 1 9.9937 -4.8117 0.0093 41 1 12.1445 -2.9703 -1.2639 42 1 12.3952 -4.5569 -0.4115 43 1 14.8217 -5.6473 -1.9256 44 1 9.1088 -4.8139 -2.2769 45 1 9.7753 -3.1557 -2.6071 46 1 6.0163 -3.4259 -0.0048 47 1 3.5888 -3.3559 0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970625594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:52 Heat of formation + Delta-G solvation = 67.338200 kcal Electronic energy + Delta-G solvation = -27897.418087 eV Core-core repulsion = 24046.570319 eV Total energy + Delta-G solvation = -3850.847768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27129 -39.89697 -38.19994 -37.13111 -34.90110 -33.88167 -32.65265 -32.05490 -30.53140 -30.38898 -28.24873 -27.47231 -24.92900 -24.30555 -24.18727 -23.46268 -22.39854 -21.40069 -20.58527 -19.37704 -18.36428 -17.94578 -16.90125 -16.67461 -16.13290 -15.84087 -15.20422 -14.86133 -14.83049 -14.69797 -14.37961 -14.17082 -13.97279 -13.74885 -13.57529 -13.41389 -13.33919 -13.11417 -12.63317 -12.42367 -12.28380 -12.08769 -11.77105 -11.62242 -11.54678 -11.40844 -11.21884 -10.94794 -10.89244 -10.67755 -10.33386 -10.13537 -9.86980 -9.81704 -9.69354 -9.42647 -9.09211 -8.88765 -8.79372 -8.55170 -6.87088 -5.76678 -3.08605 -0.08929 0.33344 1.58509 2.16602 3.16829 3.19323 3.39001 3.44307 3.46866 3.75442 3.79531 4.18147 4.27553 4.41171 4.45308 4.53003 4.66340 4.77890 4.84066 5.00010 5.10323 5.12204 5.14968 5.18023 5.39667 5.42050 5.50927 5.52476 5.54934 5.64971 5.66001 5.68294 5.81329 5.92205 5.97172 5.99913 6.07582 6.15728 6.27841 6.36067 6.41170 6.45326 6.57647 6.62889 6.79572 7.22709 7.36362 7.55030 7.55897 7.59207 7.98537 8.25111 9.05150 9.71282 10.60392 11.40698 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023003 B = 0.001981 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.959401 B =14128.903305 C =14813.566794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.165 3.835 3 C -0.179 4.179 4 C -0.043 4.043 5 C -0.119 4.119 6 C -0.025 4.025 7 C -0.131 4.131 8 C 0.556 3.444 9 O -0.539 6.539 10 N -0.711 5.711 11 C 0.150 3.850 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.148 4.148 15 C 0.176 3.824 16 N -0.612 5.612 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.125 3.875 26 C -0.071 4.071 27 C -0.100 4.100 28 C 0.149 3.851 29 N -0.480 5.480 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.398 0.602 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.136 0.864 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.464 12.125 8.479 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.013 3.987 3 C -0.199 4.199 4 C -0.068 4.068 5 C -0.121 4.121 6 C -0.045 4.045 7 C -0.135 4.135 8 C 0.343 3.657 9 O -0.418 6.418 10 N -0.362 5.362 11 C 0.046 3.954 12 H 0.107 0.893 13 C -0.217 4.217 14 C -0.168 4.168 15 C 0.050 3.950 16 N -0.338 5.338 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.001 4.001 26 C -0.092 4.092 27 C -0.119 4.119 28 C 0.027 3.973 29 N -0.190 5.190 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.233 0.767 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.153 0.847 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.072 11.777 8.321 28.923 hybrid contribution 0.781 -0.159 -0.754 1.097 sum -24.291 11.618 7.567 27.970 Atomic orbital electron populations 1.20813 0.88488 1.03839 1.03420 1.21576 0.97266 0.88222 0.91683 1.21726 0.94999 0.99346 1.03797 1.21576 0.94511 0.97349 0.93392 1.18802 0.94383 0.94336 1.04618 1.21448 0.92211 0.98175 0.92681 1.20040 0.93636 0.94046 1.05729 1.18147 0.86854 0.84054 0.76663 1.90773 1.66632 1.34209 1.50165 1.46076 1.08380 1.07700 1.74013 1.21164 0.77804 0.99535 0.96919 0.89300 1.22114 1.02100 1.01425 0.96028 1.23868 1.01613 0.94878 0.96415 1.22232 0.90139 0.94908 0.87730 1.45995 1.06717 1.50129 1.30997 1.19073 0.93506 1.17381 1.05007 0.90255 1.24785 0.96246 1.00703 0.98805 1.69817 1.07971 1.47369 1.31702 0.86054 0.79215 0.80245 0.80294 1.20490 1.21756 1.21698 1.22537 0.89887 0.95810 0.91888 1.21001 0.93804 0.97805 0.96567 1.20665 0.93737 0.96606 1.00848 1.18963 0.89086 0.92926 0.96308 1.67904 1.08345 1.28765 1.13960 0.89975 0.90378 0.90143 0.84320 0.83906 0.83687 0.76687 0.92737 0.92761 0.90937 0.89278 0.95380 0.90658 0.93680 0.94144 0.94998 0.84655 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.14 36.01 0.37 -0.18 16 2 C 0.17 1.38 6.78 -82.50 -0.56 0.82 16 3 C -0.18 -1.24 9.64 -39.78 -0.38 -1.62 16 4 C -0.04 -0.34 9.89 -39.18 -0.39 -0.72 16 5 C -0.12 -1.23 5.74 -106.82 -0.61 -1.85 16 6 C -0.03 -0.28 9.35 -38.74 -0.36 -0.64 16 7 C -0.13 -1.52 5.87 -104.98 -0.62 -2.14 16 8 C 0.56 7.78 7.73 -12.36 -0.10 7.69 16 9 O -0.54 -9.35 15.97 5.31 0.08 -9.26 16 10 N -0.71 -9.20 4.90 -54.77 -0.27 -9.46 16 11 C 0.15 2.29 2.29 -67.93 -0.16 2.14 16 12 H 0.09 1.57 7.49 -51.93 -0.39 1.18 16 13 C -0.16 -2.20 9.46 37.15 0.35 -1.85 16 14 C -0.15 -2.61 3.35 -89.69 -0.30 -2.91 16 15 C 0.18 4.05 6.90 -2.84 -0.02 4.03 16 16 N -0.61 -15.69 3.70 -177.73 -0.66 -16.35 16 17 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.35 11.39 55.49 0.63 -26.72 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.12 2.51 8.38 -2.97 -0.02 2.49 16 26 C -0.07 -0.69 9.44 -39.59 -0.37 -1.06 16 27 C -0.10 -0.99 9.95 -39.54 -0.39 -1.38 16 28 C 0.15 1.65 6.61 -84.78 -0.56 1.09 16 29 N -0.48 -5.20 10.23 -7.17 -0.07 -5.27 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.15 1.51 7.62 -52.48 -0.40 1.11 16 36 H 0.40 4.15 6.59 -40.82 -0.27 3.88 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.03 7.99 -51.93 -0.42 0.62 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 42 H 0.08 1.91 7.16 -51.93 -0.37 1.53 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.66 8.10 -51.93 -0.42 0.23 16 46 H 0.14 0.99 6.35 -52.49 -0.33 0.66 16 47 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -34.80 391.33 -10.58 -45.38 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.79 Total: 1.45 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.39 Total: -2.89 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.37 Total: -57.81 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.80 -10.58 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970625594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.722 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds