Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39312 * 119.06291 * 2 1 4 4 C 1.38853 * 119.57901 * 180.30011 * 3 2 1 5 5 C 1.47907 * 121.11268 * 179.70090 * 4 3 2 6 6 O 1.21535 * 120.00162 * 174.16518 * 5 4 3 7 7 N 1.34773 * 119.99585 * 354.17757 * 5 4 3 8 8 C 1.46502 * 120.00074 * 179.97438 * 7 5 4 9 9 H 1.09006 * 109.47160 * 34.99465 * 8 7 5 10 10 C 1.52999 * 109.47224 * 274.99712 * 8 7 5 11 11 C 1.53001 * 109.47676 * 154.99480 * 8 7 5 12 12 C 1.53943 * 113.74048 * 276.67584 * 11 8 7 13 13 N 1.47578 * 86.11753 * 222.04460 * 12 11 8 14 14 C 1.36938 * 134.49709 * 204.64175 * 13 12 11 15 15 H 1.07993 * 120.00213 * 179.97438 * 14 13 12 16 16 C 1.38814 * 119.99449 * 359.97438 * 14 13 12 17 17 N 1.31618 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99841 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47043 * 60.00416 * 18 16 14 20 20 H 1.48499 * 109.47444 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47433 * 300.00684 * 18 16 14 22 22 C 1.47582 * 91.01199 * 24.63914 * 13 12 11 23 23 C 1.41830 * 117.78018 * 359.47016 * 4 3 2 24 24 C 1.40091 * 121.37763 * 180.20643 * 23 4 3 25 25 C 1.36252 * 119.64707 * 180.32047 * 24 23 4 26 26 C 1.39348 * 120.83216 * 0.02562 * 25 24 23 27 27 C 1.36060 * 121.05073 * 359.93296 * 26 25 24 28 28 C 1.40710 * 119.74067 * 0.08956 * 27 26 25 29 29 N 1.30969 * 119.05765 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47105 * 90.00310 * 1 2 3 31 31 H 1.09006 * 109.46870 * 210.00105 * 1 2 3 32 32 H 1.08994 * 109.46747 * 329.99931 * 1 2 3 33 33 H 1.07993 * 120.20702 * 0.02583 * 3 2 1 34 34 H 0.97006 * 120.00558 * 359.97438 * 7 5 4 35 35 H 1.08991 * 109.47800 * 179.97438 * 10 8 7 36 36 H 1.09006 * 109.46850 * 299.99942 * 10 8 7 37 37 H 1.09007 * 109.47066 * 59.99263 * 10 8 7 38 38 H 1.08998 * 112.93956 * 48.40531 * 11 8 7 39 39 H 1.08997 * 113.76908 * 336.34803 * 12 11 8 40 40 H 1.09000 * 113.77347 * 107.74316 * 12 11 8 41 41 H 0.96999 * 119.99849 * 180.02562 * 17 16 14 42 42 H 1.08998 * 113.76917 * 221.05409 * 22 13 12 43 43 H 1.09006 * 113.76704 * 89.66563 * 22 13 12 44 44 H 1.08005 * 120.17802 * 0.34910 * 24 23 4 45 45 H 1.08001 * 119.58477 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.47624 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.13255 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5722 1.2302 -0.0063 5 6 4.3251 2.5034 -0.0131 6 8 5.5361 2.4938 0.0884 7 7 3.6679 3.6741 -0.1317 8 6 4.4134 4.9352 -0.1379 9 1 5.3687 4.7901 -0.6425 10 6 4.6610 5.3884 1.3023 11 6 3.6037 6.0028 -0.8764 12 6 3.7690 5.9582 -2.4063 13 7 3.8365 7.4310 -2.3414 14 6 3.5745 8.4437 -3.2252 15 1 3.7066 9.4720 -2.9228 16 6 3.1390 8.1483 -4.5097 17 7 2.9775 6.8951 -4.8780 18 14 2.7808 9.5296 -5.7151 19 1 4.0122 10.3315 -5.9293 20 1 2.3330 8.9541 -7.0088 21 1 1.7118 10.4017 -5.1654 22 6 4.2999 7.3742 -0.9413 23 6 4.2446 -0.0186 -0.0010 24 6 5.6435 -0.0938 -0.0025 25 6 6.2529 -1.3125 -0.0038 26 6 5.5021 -2.4864 -0.0043 27 6 4.1420 -2.4496 -0.0020 28 6 3.4773 -1.2094 -0.0011 29 7 2.1432 -1.1448 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3632 0.8899 0.5138 33 1 1.6320 2.1460 0.0004 34 1 2.7013 3.6817 -0.2129 35 1 5.2161 6.3264 1.2978 36 1 3.7057 5.5335 1.8069 37 1 5.2380 4.6277 1.8285 38 1 2.5659 6.0526 -0.5467 39 1 4.6969 5.4899 -2.7344 40 1 2.8918 5.5814 -2.9322 41 1 2.6735 6.6888 -5.7758 42 1 3.8466 8.1280 -0.2976 43 1 5.3839 7.3220 -0.8392 44 1 6.2358 0.8093 -0.0021 45 1 7.3314 -1.3693 -0.0045 46 1 6.0078 -3.4407 -0.0057 47 1 3.5748 -3.3687 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970841852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = 75.365984 kcal Electronic energy + Delta-G solvation = -28661.548587 eV Core-core repulsion = 24811.048930 eV Total energy + Delta-G solvation = -3850.499657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31282 -39.64119 -38.11867 -37.55096 -34.99726 -33.68713 -32.25665 -32.21060 -30.89791 -29.70161 -27.97205 -27.55868 -25.29816 -24.61697 -23.99299 -23.16334 -22.62568 -21.22571 -20.56712 -19.15009 -18.18365 -17.55155 -17.41337 -16.76265 -16.09137 -15.50539 -15.28985 -14.98120 -14.90556 -14.82765 -14.52310 -13.96757 -13.88480 -13.59433 -13.37945 -13.29045 -13.22391 -13.08202 -12.51735 -12.47771 -12.19414 -11.79041 -11.73033 -11.55432 -11.53955 -11.34767 -11.33698 -10.93311 -10.76335 -10.63763 -10.42525 -10.35918 -9.95100 -9.81995 -9.49004 -9.33885 -8.97653 -8.88577 -8.81712 -8.38702 -6.90344 -5.78696 -3.11273 -0.06944 0.59307 1.57575 2.59028 2.98685 3.07600 3.37985 3.42187 3.43504 3.90631 3.94468 4.26348 4.41130 4.43908 4.54045 4.65809 4.88984 4.96741 5.04617 5.10960 5.18609 5.20803 5.23298 5.28547 5.35855 5.48550 5.51714 5.55497 5.59128 5.68950 5.72972 5.87140 5.89137 5.92052 5.99393 6.15103 6.16745 6.28109 6.33359 6.34009 6.41054 6.52859 6.59910 6.69871 6.74500 7.19858 7.31882 7.46061 7.53004 7.67852 7.96096 8.13515 9.02618 9.68872 10.57590 11.38152 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002562 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.545963 B =10924.504787 C =11428.054934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.154 3.846 3 C -0.135 4.135 4 C -0.063 4.063 5 C 0.560 3.440 6 O -0.529 6.529 7 N -0.704 5.704 8 C 0.150 3.850 9 H 0.091 0.909 10 C -0.159 4.159 11 C -0.148 4.148 12 C 0.170 3.830 13 N -0.612 5.612 14 C -0.224 4.224 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.131 3.869 23 C -0.072 4.072 24 C -0.096 4.096 25 C -0.124 4.124 26 C -0.096 4.096 27 C -0.103 4.103 28 C 0.130 3.870 29 N -0.463 5.463 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.170 0.830 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -16.987 13.911 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.002 3.998 3 C -0.156 4.156 4 C -0.074 4.074 5 C 0.347 3.653 6 O -0.407 6.407 7 N -0.354 5.354 8 C 0.045 3.955 9 H 0.109 0.891 10 C -0.217 4.217 11 C -0.168 4.168 12 C 0.045 3.955 13 N -0.338 5.338 14 C -0.352 4.352 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.004 3.996 23 C -0.075 4.075 24 C -0.114 4.114 25 C -0.142 4.142 26 C -0.116 4.116 27 C -0.121 4.121 28 C 0.008 3.992 29 N -0.173 5.173 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.187 0.813 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.660 -17.640 13.650 22.314 hybrid contribution -0.130 1.457 -0.883 1.709 sum -0.790 -16.183 12.767 20.628 Atomic orbital electron populations 1.20812 0.88039 1.03864 1.03724 1.21411 0.97330 0.87618 0.93471 1.22280 0.93564 0.99930 0.99860 1.20427 0.93684 0.93556 0.99698 1.18002 0.87122 0.83287 0.76913 1.90577 1.13505 1.86517 1.50098 1.46046 1.10997 1.05752 1.72622 1.21203 0.96350 0.81630 0.96294 0.89098 1.22139 1.01728 1.01689 0.96146 1.23847 0.99158 0.94673 0.99078 1.22269 0.99505 0.85220 0.88533 1.45934 1.76502 1.02298 1.09064 1.18973 1.37979 0.86385 0.91867 0.90303 1.24786 1.01960 0.96487 0.97191 1.69802 1.51980 1.16057 1.18980 0.86206 0.78123 0.80944 0.80512 1.21179 1.21551 1.21075 1.22492 0.96114 0.92959 0.88033 1.18669 0.95188 0.92037 1.01565 1.22095 0.93440 1.00541 0.95298 1.21094 1.00540 0.92267 1.00296 1.20982 0.93737 0.98861 0.98044 1.20740 0.94213 0.95994 1.01189 1.18836 0.88761 0.92978 0.98609 1.67626 1.08834 1.28848 1.12015 0.89751 0.90172 0.90191 0.83862 0.76453 0.91156 0.92629 0.92693 0.89314 0.95645 0.91013 0.93599 0.93691 0.94717 0.81316 0.85411 0.85349 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.14 36.01 0.37 -0.42 16 2 C 0.15 1.67 6.78 -82.56 -0.56 1.11 16 3 C -0.14 -1.45 9.20 -38.95 -0.36 -1.81 16 4 C -0.06 -0.82 5.94 -104.34 -0.62 -1.44 16 5 C 0.56 8.02 7.72 -12.30 -0.09 7.93 16 6 O -0.53 -8.80 13.19 5.33 0.07 -8.73 16 7 N -0.70 -9.14 5.03 -54.73 -0.28 -9.41 16 8 C 0.15 2.17 2.42 -67.93 -0.16 2.01 16 9 H 0.09 1.53 7.37 -51.93 -0.38 1.15 16 10 C -0.16 -1.98 9.29 37.16 0.35 -1.63 16 11 C -0.15 -2.51 3.50 -89.70 -0.31 -2.83 16 12 C 0.17 3.87 7.07 -2.98 -0.02 3.85 16 13 N -0.61 -15.41 3.70 -177.93 -0.66 -16.07 16 14 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -27.14 11.38 55.49 0.63 -26.51 16 18 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.13 2.53 7.56 -2.98 -0.02 2.51 16 23 C -0.07 -0.99 5.76 -106.52 -0.61 -1.60 16 24 C -0.10 -1.25 9.25 -39.60 -0.37 -1.62 16 25 C -0.12 -1.30 9.96 -39.88 -0.40 -1.70 16 26 C -0.10 -0.90 9.94 -39.95 -0.40 -1.30 16 27 C -0.10 -1.11 9.98 -39.43 -0.39 -1.50 16 28 C 0.13 1.70 6.61 -84.87 -0.56 1.14 16 29 N -0.46 -5.88 10.19 -7.25 -0.07 -5.96 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.14 1.11 6.55 -52.49 -0.34 0.77 16 34 H 0.40 4.28 6.78 -40.82 -0.28 4.00 16 35 H 0.07 0.85 7.43 -51.93 -0.39 0.46 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 40 H 0.07 1.80 7.15 -51.93 -0.37 1.43 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 44 H 0.17 2.42 4.98 -52.48 -0.26 2.16 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -33.67 385.20 -10.58 -44.24 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.62 Total: 3.66 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -4.43 Total: -4.04 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.38 Total: -57.95 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.67 -10.58 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970841852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.609 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds