Wall clock time and date at job start Tue Mar 31 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39312 * 119.06291 * 2 1 4 4 C 1.38853 * 119.57901 * 180.30011 * 3 2 1 5 5 C 1.47907 * 121.11268 * 179.70090 * 4 3 2 6 6 O 1.21535 * 120.00162 * 174.16518 * 5 4 3 7 7 N 1.34773 * 119.99585 * 354.17757 * 5 4 3 8 8 C 1.46502 * 120.00074 * 179.97438 * 7 5 4 9 9 H 1.09006 * 109.47160 * 34.99465 * 8 7 5 10 10 C 1.52999 * 109.47224 * 274.99712 * 8 7 5 11 11 C 1.53001 * 109.47676 * 154.99480 * 8 7 5 12 12 C 1.53943 * 113.74048 * 276.67584 * 11 8 7 13 13 N 1.47578 * 86.11753 * 222.04460 * 12 11 8 14 14 C 1.36938 * 134.49709 * 204.64175 * 13 12 11 15 15 H 1.07993 * 120.00213 * 179.97438 * 14 13 12 16 16 C 1.38814 * 119.99449 * 359.97438 * 14 13 12 17 17 N 1.31618 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99841 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47043 * 60.00416 * 18 16 14 20 20 H 1.48499 * 109.47444 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47433 * 300.00684 * 18 16 14 22 22 C 1.47582 * 91.01199 * 24.63914 * 13 12 11 23 23 C 1.41830 * 117.78018 * 359.47016 * 4 3 2 24 24 C 1.40091 * 121.37763 * 180.20643 * 23 4 3 25 25 C 1.36252 * 119.64707 * 180.32047 * 24 23 4 26 26 C 1.39348 * 120.83216 * 0.02562 * 25 24 23 27 27 C 1.36060 * 121.05073 * 359.93296 * 26 25 24 28 28 C 1.40710 * 119.74067 * 0.08956 * 27 26 25 29 29 N 1.30969 * 119.05765 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47105 * 90.00310 * 1 2 3 31 31 H 1.09006 * 109.46870 * 210.00105 * 1 2 3 32 32 H 1.08994 * 109.46747 * 329.99931 * 1 2 3 33 33 H 1.07993 * 120.20702 * 0.02583 * 3 2 1 34 34 H 0.97006 * 120.00558 * 359.97438 * 7 5 4 35 35 H 1.08991 * 109.47800 * 179.97438 * 10 8 7 36 36 H 1.09006 * 109.46850 * 299.99942 * 10 8 7 37 37 H 1.09007 * 109.47066 * 59.99263 * 10 8 7 38 38 H 1.08998 * 112.93956 * 48.40531 * 11 8 7 39 39 H 1.08997 * 113.76908 * 336.34803 * 12 11 8 40 40 H 1.09000 * 113.77347 * 107.74316 * 12 11 8 41 41 H 0.96999 * 119.99849 * 180.02562 * 17 16 14 42 42 H 1.08998 * 113.76917 * 221.05409 * 22 13 12 43 43 H 1.09006 * 113.76704 * 89.66563 * 22 13 12 44 44 H 1.08005 * 120.17802 * 0.34910 * 24 23 4 45 45 H 1.08001 * 119.58477 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.47624 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.13255 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5722 1.2302 -0.0063 5 6 4.3251 2.5034 -0.0131 6 8 5.5361 2.4938 0.0884 7 7 3.6679 3.6741 -0.1317 8 6 4.4134 4.9352 -0.1379 9 1 5.3687 4.7901 -0.6425 10 6 4.6610 5.3884 1.3023 11 6 3.6037 6.0028 -0.8764 12 6 3.7690 5.9582 -2.4063 13 7 3.8365 7.4310 -2.3414 14 6 3.5745 8.4437 -3.2252 15 1 3.7066 9.4720 -2.9228 16 6 3.1390 8.1483 -4.5097 17 7 2.9775 6.8951 -4.8780 18 14 2.7808 9.5296 -5.7151 19 1 4.0122 10.3315 -5.9293 20 1 2.3330 8.9541 -7.0088 21 1 1.7118 10.4017 -5.1654 22 6 4.2999 7.3742 -0.9413 23 6 4.2446 -0.0186 -0.0010 24 6 5.6435 -0.0938 -0.0025 25 6 6.2529 -1.3125 -0.0038 26 6 5.5021 -2.4864 -0.0043 27 6 4.1420 -2.4496 -0.0020 28 6 3.4773 -1.2094 -0.0011 29 7 2.1432 -1.1448 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3632 0.8899 0.5138 33 1 1.6320 2.1460 0.0004 34 1 2.7013 3.6817 -0.2129 35 1 5.2161 6.3264 1.2978 36 1 3.7057 5.5335 1.8069 37 1 5.2380 4.6277 1.8285 38 1 2.5659 6.0526 -0.5467 39 1 4.6969 5.4899 -2.7344 40 1 2.8918 5.5814 -2.9322 41 1 2.6735 6.6888 -5.7758 42 1 3.8466 8.1280 -0.2976 43 1 5.3839 7.3220 -0.8392 44 1 6.2358 0.8093 -0.0021 45 1 7.3314 -1.3693 -0.0045 46 1 6.0078 -3.4407 -0.0057 47 1 3.5748 -3.3687 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970841852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:55 Heat of formation + Delta-G solvation = 54.595091 kcal Electronic energy + Delta-G solvation = -28662.449280 eV Core-core repulsion = 24811.048930 eV Total energy + Delta-G solvation = -3851.400351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23467 -40.82347 -39.63199 -38.37577 -36.32289 -34.67336 -34.13686 -32.97357 -32.08669 -30.70102 -29.34976 -28.70430 -26.73635 -25.92951 -25.42843 -24.24874 -23.47731 -22.63290 -21.69623 -20.62589 -19.01450 -18.80403 -18.45607 -18.40692 -17.26684 -16.91909 -16.44217 -16.30226 -16.00216 -15.75007 -15.64077 -15.50087 -15.10973 -14.72853 -14.56981 -14.35084 -14.04697 -14.02778 -13.89912 -13.45251 -13.26560 -13.09420 -13.07676 -12.89357 -12.71055 -12.61042 -12.51188 -12.34149 -12.30752 -12.03309 -11.75162 -11.57484 -11.51560 -11.38457 -11.20772 -10.86230 -10.36110 -10.16207 -9.71711 -9.27147 -8.92168 -7.90648 -5.24233 -0.97231 -0.25721 0.66004 1.44975 1.48210 1.54325 1.67736 1.91566 2.08401 2.47248 3.05216 3.14792 3.28724 3.32438 3.40607 3.57356 3.66268 3.74592 3.83362 3.93232 4.14583 4.17991 4.28507 4.37591 4.41950 4.45332 4.48579 4.58887 4.68969 4.74313 4.80347 4.82822 4.85717 4.87025 5.00625 5.02219 5.05953 5.11579 5.21232 5.25879 5.33405 5.36924 5.40380 5.50772 5.54135 5.58687 5.65496 5.88466 5.93851 6.40230 6.80768 6.91687 7.06388 7.61083 8.56497 9.25745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.002562 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.545963 B =10924.504787 C =11428.054934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.146 3.854 3 C -0.124 4.124 4 C -0.087 4.087 5 C 0.560 3.440 6 O -0.558 6.558 7 N -0.697 5.697 8 C 0.159 3.841 9 H 0.064 0.936 10 C -0.150 4.150 11 C -0.108 4.108 12 C 0.166 3.834 13 N -0.644 5.644 14 C -0.235 4.235 15 H 0.085 0.915 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.978 3.022 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.130 3.870 23 C -0.093 4.093 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.090 4.090 27 C -0.109 4.109 28 C 0.107 3.893 29 N -0.477 5.477 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.173 0.827 34 H 0.413 0.587 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.001 0.999 40 H 0.042 0.958 41 H 0.247 0.753 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.166 0.834 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -17.187 15.415 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.007 4.007 3 C -0.144 4.144 4 C -0.098 4.098 5 C 0.348 3.652 6 O -0.439 6.439 7 N -0.347 5.347 8 C 0.054 3.946 9 H 0.082 0.918 10 C -0.208 4.208 11 C -0.128 4.128 12 C 0.040 3.960 13 N -0.370 5.370 14 C -0.364 4.364 15 H 0.103 0.897 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.806 3.194 19 H -0.206 1.206 20 H -0.222 1.222 21 H -0.198 1.198 22 C 0.005 3.995 23 C -0.096 4.096 24 C -0.145 4.145 25 C -0.134 4.134 26 C -0.110 4.110 27 C -0.127 4.127 28 C -0.015 4.015 29 N -0.188 5.188 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.191 0.809 34 H 0.250 0.750 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.167 0.833 45 H 0.168 0.832 46 H 0.183 0.817 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.759 -17.831 15.198 23.495 hybrid contribution 0.250 1.468 -1.327 1.995 sum -1.509 -16.362 13.871 21.504 Atomic orbital electron populations 1.20925 0.85370 1.05257 1.04573 1.22039 0.99033 0.87169 0.92477 1.22627 0.92692 1.01314 0.97777 1.20398 0.94710 0.92748 1.01911 1.18222 0.86863 0.83887 0.76271 1.90570 1.14859 1.86978 1.51450 1.45895 1.11557 1.04959 1.72337 1.20938 0.94719 0.81563 0.97337 0.91791 1.22059 1.02947 1.01702 0.94087 1.23457 1.00357 0.94215 0.94777 1.22163 0.97039 0.84284 0.92507 1.46374 1.76987 1.02654 1.11031 1.19411 1.36856 0.87519 0.92599 0.89727 1.25636 1.02686 0.98741 0.99092 1.70004 1.53473 1.17969 1.18822 0.85161 0.78163 0.78231 0.77835 1.20622 1.22200 1.19819 1.22692 0.96818 0.94655 0.85295 1.18884 0.95647 0.92718 1.02348 1.22028 0.93491 1.01010 0.97932 1.21428 1.01880 0.91794 0.98322 1.21356 0.93310 0.99892 0.96412 1.21071 0.95035 0.95874 1.00759 1.19185 0.89180 0.93600 0.99486 1.67695 1.08727 1.29806 1.12534 0.88978 0.89851 0.87772 0.80935 0.74960 0.90481 0.90470 0.93113 0.87287 0.98097 0.93950 0.94385 0.91505 0.93870 0.83251 0.83152 0.81653 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.14 71.24 0.72 -0.56 16 2 C 0.15 2.98 6.78 42.95 0.29 3.27 16 3 C -0.12 -2.52 9.20 22.68 0.21 -2.31 16 4 C -0.09 -2.31 5.94 -19.68 -0.12 -2.43 16 5 C 0.56 16.39 7.72 86.81 0.67 17.06 16 6 O -0.56 -19.51 13.19 -3.83 -0.05 -19.56 16 7 N -0.70 -17.68 5.03 -445.35 -2.24 -19.92 16 8 C 0.16 4.52 2.42 44.99 0.11 4.63 16 9 H 0.06 2.21 7.37 -2.38 -0.02 2.19 16 10 C -0.15 -3.42 9.29 71.98 0.67 -2.75 16 11 C -0.11 -3.57 3.50 -10.14 -0.04 -3.61 16 12 C 0.17 7.74 7.07 86.48 0.61 8.35 16 13 N -0.64 -32.54 3.70 -716.83 -2.65 -35.19 16 14 C -0.24 -13.15 10.70 84.03 0.90 -12.25 16 15 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 16 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 17 N -0.95 -57.76 11.38 21.65 0.25 -57.51 16 18 Si 0.98 45.66 29.55 68.60 2.03 47.68 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.13 4.87 7.56 86.48 0.65 5.53 16 23 C -0.09 -2.64 5.76 -21.09 -0.12 -2.76 16 24 C -0.13 -3.46 9.25 22.26 0.21 -3.25 16 25 C -0.12 -2.38 9.96 22.07 0.22 -2.16 16 26 C -0.09 -1.54 9.94 22.03 0.22 -1.32 16 27 C -0.11 -2.24 9.98 22.37 0.22 -2.02 16 28 C 0.11 2.79 6.61 40.33 0.27 3.05 16 29 N -0.48 -11.85 10.19 -176.84 -1.80 -13.65 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.17 2.28 6.55 -2.91 -0.02 2.26 16 34 H 0.41 8.17 6.78 -92.70 -0.63 7.54 16 35 H 0.08 1.67 7.43 -2.39 -0.02 1.65 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.00 0.06 7.96 -2.39 -0.02 0.04 16 40 H 0.04 2.21 7.15 -2.39 -0.02 2.19 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.57 8.06 -2.38 -0.02 1.55 16 44 H 0.15 4.64 4.98 -2.91 -0.01 4.62 16 45 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 47 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -76.41 385.20 2.06 -74.35 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.37 Total: 20.79 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.16 Total: 3.01 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -6.45 Total: -126.27 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.41 2.06 -74.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970841852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.948 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds