Wall clock time and date at job start Tue Mar 31 2020 22:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30823 * 119.22872 * 2 1 4 4 C 1.33791 * 121.71876 * 180.24575 * 3 2 1 5 5 C 1.40534 * 120.82377 * 179.74319 * 4 3 2 6 6 C 1.36133 * 119.81135 * 180.02562 * 5 4 3 7 7 C 1.39345 * 121.09766 * 359.97438 * 6 5 4 8 8 C 1.36134 * 120.83608 * 0.02562 * 7 6 5 9 9 C 1.40553 * 119.61823 * 359.96222 * 8 7 6 10 10 C 1.40491 * 121.22340 * 180.02562 * 9 8 7 11 11 C 1.39054 * 117.95949 * 180.02562 * 10 9 8 12 12 C 1.47763 * 120.26636 * 179.97438 * 11 10 9 13 13 O 1.21564 * 119.99953 * 139.32778 * 12 11 10 14 14 N 1.34774 * 119.99516 * 319.32638 * 12 11 10 15 15 C 1.47419 * 125.65454 * 5.36966 * 14 12 11 16 16 C 1.55119 * 104.94640 * 204.03932 * 15 14 12 17 17 C 1.55164 * 101.48044 * 323.21960 * 16 15 14 18 18 H 1.09000 * 110.71787 * 276.82767 * 17 16 15 19 19 N 1.46501 * 110.72068 * 153.73885 * 17 16 15 20 20 C 1.46506 * 119.99606 * 302.43955 * 19 17 16 21 21 C 1.36937 * 120.00368 * 122.71195 * 19 17 16 22 22 H 1.07996 * 120.00264 * 325.04861 * 21 19 17 23 23 C 1.38811 * 120.00081 * 145.04574 * 21 19 17 24 24 N 1.31615 * 120.00396 * 157.93527 * 23 21 19 25 25 Si 1.86809 * 119.99823 * 337.93834 * 23 21 19 26 26 H 1.48501 * 109.46978 * 95.40279 * 25 23 21 27 27 H 1.48501 * 109.47095 * 215.40122 * 25 23 21 28 28 H 1.48501 * 109.47157 * 335.40136 * 25 23 21 29 29 C 1.47024 * 125.64286 * 185.40632 * 14 12 11 30 30 H 1.09001 * 109.46593 * 265.50478 * 1 2 3 31 31 H 1.08994 * 109.47107 * 25.50728 * 1 2 3 32 32 H 1.08997 * 109.46944 * 145.50886 * 1 2 3 33 33 H 1.07996 * 120.09772 * 0.04605 * 5 4 3 34 34 H 1.08004 * 119.45058 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.58327 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.19282 * 180.02562 * 8 7 6 37 37 H 1.07996 * 121.02216 * 359.97438 * 10 9 8 38 38 H 1.09005 * 110.36628 * 322.99888 * 15 14 12 39 39 H 1.08996 * 110.36980 * 85.21026 * 15 14 12 40 40 H 1.08995 * 111.16775 * 205.12971 * 16 15 14 41 41 H 1.08999 * 110.94031 * 81.20913 * 16 15 14 42 42 H 1.08997 * 109.47295 * 84.70100 * 20 19 17 43 43 H 1.09000 * 109.46505 * 204.70001 * 20 19 17 44 44 H 1.08998 * 109.47028 * 324.69701 * 20 19 17 45 45 H 0.96998 * 120.00610 * 179.97438 * 24 23 21 46 46 H 1.08999 * 109.88662 * 59.49231 * 29 14 12 47 47 H 1.09000 * 109.88486 * 298.32015 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1998 -0.0049 5 6 4.1494 2.4368 -0.0102 6 6 5.5103 2.4719 -0.0156 7 6 6.2605 1.2976 -0.0155 8 6 5.6513 0.0803 -0.0105 9 6 4.2477 0.0060 -0.0045 10 6 3.5840 -1.2322 0.0014 11 6 2.1935 -1.2266 0.0065 12 6 1.4435 -2.4997 0.0123 13 8 0.4496 -2.6166 0.7024 14 7 1.8615 -3.5313 -0.7477 15 6 3.1036 -3.5664 -1.5408 16 6 2.8365 -4.6103 -2.6567 17 6 1.9902 -5.6654 -1.8963 18 1 2.6337 -6.3535 -1.3481 19 7 1.1210 -6.3971 -2.8212 20 6 0.1589 -5.6696 -3.6527 21 6 1.2040 -7.7614 -2.9045 22 1 2.1590 -8.2523 -2.7898 23 6 0.0604 -8.5134 -3.1362 24 7 0.1605 -9.7250 -3.6404 25 14 -1.6206 -7.8057 -2.7324 26 1 -2.2096 -7.2011 -3.9542 27 1 -2.5083 -8.8891 -2.2389 28 1 -1.4802 -6.7643 -1.6830 29 6 1.1536 -4.8079 -0.9235 30 1 -0.3632 -0.0805 1.0245 31 1 -0.3633 0.9274 -0.4425 32 1 -0.3633 -0.8470 -0.5819 33 1 3.5840 3.3569 -0.0096 34 1 6.0169 3.4257 -0.0193 35 1 7.3391 1.3540 -0.0195 36 1 6.2429 -0.8232 -0.0100 37 1 4.1367 -2.1600 0.0010 38 1 3.3035 -2.5872 -1.9762 39 1 3.9416 -3.8828 -0.9197 40 1 3.7676 -5.0447 -3.0204 41 1 2.2673 -4.1689 -3.4748 42 1 0.6546 -5.3152 -4.5564 43 1 -0.6613 -6.3339 -3.9248 44 1 -0.2325 -4.8185 -3.0953 45 1 -0.6386 -10.2506 -3.8020 46 1 0.1644 -4.6284 -1.3445 47 1 1.0637 -5.3172 0.0360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971628548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:12 Heat of formation + Delta-G solvation = 60.967253 kcal Electronic energy + Delta-G solvation = -29229.702128 eV Core-core repulsion = 25378.578095 eV Total energy + Delta-G solvation = -3851.124033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35733 -39.82883 -37.98345 -37.10969 -35.16519 -33.88524 -32.17285 -31.91668 -30.78412 -30.09714 -28.40803 -27.90563 -26.30796 -25.28679 -23.52710 -22.89963 -22.64756 -22.18079 -20.19481 -19.38009 -18.48049 -17.42826 -17.16308 -16.88659 -16.31613 -16.05096 -15.47576 -15.35429 -14.88978 -14.76667 -14.39591 -14.09637 -13.95745 -13.67250 -13.46757 -13.22634 -13.22003 -12.86701 -12.65350 -12.37588 -12.35237 -12.12628 -12.04858 -11.93935 -11.86057 -11.78540 -11.59967 -11.03967 -10.93623 -10.80711 -10.57865 -10.25101 -10.17013 -10.01264 -9.65679 -9.60364 -9.00331 -8.62648 -8.58264 -8.51647 -7.01288 -6.08597 -3.50544 -0.05282 0.36588 1.56874 2.33178 2.81541 3.03457 3.26342 3.44000 3.48148 3.75741 3.86657 4.16155 4.25623 4.37714 4.43985 4.46493 4.65240 4.71038 4.75968 4.87740 4.94015 5.05311 5.13134 5.23273 5.28177 5.34328 5.44866 5.50004 5.55904 5.58447 5.60327 5.64305 5.74012 5.77443 5.95425 5.97405 6.03100 6.04837 6.17285 6.20824 6.21629 6.33416 6.34778 6.48189 6.58164 6.59582 6.70525 7.51184 7.64306 7.90591 8.11343 8.25270 8.83982 9.59348 9.96424 11.06366 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002756 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.771580 B =10156.683474 C =11022.135017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.209 3.791 3 N -0.481 5.481 4 C 0.146 3.854 5 C -0.100 4.100 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.020 4.020 11 C -0.173 4.173 12 C 0.573 3.427 13 O -0.529 6.529 14 N -0.605 5.605 15 C 0.094 3.906 16 C -0.150 4.150 17 C 0.172 3.828 18 H 0.090 0.910 19 N -0.595 5.595 20 C 0.106 3.894 21 C -0.275 4.275 22 H 0.084 0.916 23 C 0.036 3.964 24 N -0.897 5.897 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.301 1.301 28 H -0.268 1.268 29 C 0.083 3.917 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.265 0.735 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 23.039 6.163 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.056 3.944 3 N -0.189 5.189 4 C 0.024 3.976 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.142 4.142 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.047 4.047 11 C -0.178 4.178 12 C 0.360 3.640 13 O -0.407 6.407 14 N -0.338 5.338 15 C -0.029 4.029 16 C -0.190 4.190 17 C 0.062 3.938 18 H 0.108 0.892 19 N -0.317 5.317 20 C -0.038 4.038 21 C -0.403 4.403 22 H 0.101 0.899 23 C -0.165 4.165 24 N -0.537 5.537 25 Si 0.713 3.287 26 H -0.214 1.214 27 H -0.229 1.229 28 H -0.193 1.193 29 C -0.041 4.041 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.816 23.667 6.499 26.821 hybrid contribution -0.465 -0.501 0.193 0.710 sum 10.352 23.166 6.692 26.241 Atomic orbital electron populations 1.20852 0.87592 1.03469 1.04314 1.21474 0.97423 0.86247 0.89273 1.67874 1.08297 1.27911 1.14864 1.18996 0.89111 0.93057 0.96410 1.20814 0.94223 0.96369 1.00454 1.20972 0.93676 0.98854 0.97790 1.20927 1.00459 0.92258 1.00578 1.21056 0.92407 0.98773 0.98138 1.18777 0.94984 0.93543 1.04529 1.22162 0.93129 0.97963 0.91404 1.20822 0.94344 0.95132 1.07531 1.17637 0.84316 0.82187 0.79862 1.90806 1.26457 1.82465 1.40954 1.48458 1.23732 1.15653 1.45975 1.22592 0.86700 1.00333 0.93286 1.23343 1.01819 0.96563 0.97230 1.21521 0.91475 0.91618 0.89166 0.89218 1.44073 1.42747 1.03770 1.41062 1.21359 0.93247 0.95461 0.93780 1.18804 0.94468 0.79651 1.47404 0.89863 1.25437 0.98046 0.95071 0.97982 1.69846 1.29408 1.11445 1.43026 0.86904 0.85041 0.78098 0.78679 1.21445 1.22914 1.19316 1.22946 0.97734 0.82459 1.00996 0.89137 0.90454 0.90021 0.84605 0.85182 0.85316 0.84924 0.83323 0.91034 0.91205 0.89802 0.90581 0.96211 0.93167 0.95109 0.92519 0.90956 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.85 36.01 0.32 -0.98 16 2 C 0.21 2.82 6.81 -82.15 -0.56 2.26 16 3 N -0.48 -6.36 10.20 -6.93 -0.07 -6.43 16 4 C 0.15 1.71 6.61 -84.79 -0.56 1.15 16 5 C -0.10 -0.92 9.97 -39.47 -0.39 -1.31 16 6 C -0.09 -0.64 9.94 -39.93 -0.40 -1.04 16 7 C -0.12 -0.82 9.96 -39.93 -0.40 -1.22 16 8 C -0.09 -0.66 9.77 -39.47 -0.39 -1.05 16 9 C -0.12 -1.22 5.74 -106.81 -0.61 -1.84 16 10 C -0.02 -0.22 7.80 -38.43 -0.30 -0.52 16 11 C -0.17 -2.31 5.43 -104.83 -0.57 -2.87 16 12 C 0.57 8.94 6.77 -12.37 -0.08 8.86 16 13 O -0.53 -9.85 15.49 5.31 0.08 -9.77 16 14 N -0.60 -9.02 3.33 -171.53 -0.57 -9.60 16 15 C 0.09 1.10 5.24 -2.42 -0.01 1.09 16 16 C -0.15 -2.10 6.66 -24.47 -0.16 -2.26 16 17 C 0.17 3.06 3.44 -66.09 -0.23 2.84 16 18 H 0.09 1.60 7.95 -51.93 -0.41 1.19 16 19 N -0.59 -13.27 2.55 -171.38 -0.44 -13.71 16 20 C 0.11 2.23 8.21 59.85 0.49 2.72 16 21 C -0.28 -7.31 9.90 -15.06 -0.15 -7.46 16 22 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 23 C 0.04 1.00 5.30 -17.43 -0.09 0.91 16 24 N -0.90 -26.64 13.97 55.49 0.78 -25.87 16 25 Si 0.88 21.96 24.88 -169.99 -4.23 17.73 16 26 H -0.29 -6.94 6.66 56.52 0.38 -6.56 16 27 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 29 C 0.08 1.45 6.46 -3.07 -0.02 1.43 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.09 6.77 -51.93 -0.35 0.74 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.15 1.28 5.94 -52.49 -0.31 0.97 16 38 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 39 H 0.07 0.67 7.35 -51.93 -0.38 0.28 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.13 7.06 -51.93 -0.37 0.76 16 42 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 43 H 0.05 1.16 3.14 -51.93 -0.16 1.00 16 44 H 0.03 0.59 6.22 -51.93 -0.32 0.27 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 1.42 6.06 -51.93 -0.31 1.11 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -32.54 370.41 -9.33 -41.87 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.35 Total: -0.52 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -4.11 Total: 0.70 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.30 Total: -55.60 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.23 Total: 17.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.54 -9.33 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971628548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.835 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds