Wall clock time and date at job start Tue Mar 31 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30823 * 119.22872 * 2 1 4 4 C 1.33791 * 121.71876 * 180.24575 * 3 2 1 5 5 C 1.40534 * 120.82377 * 179.74319 * 4 3 2 6 6 C 1.36133 * 119.81135 * 180.02562 * 5 4 3 7 7 C 1.39345 * 121.09766 * 359.97438 * 6 5 4 8 8 C 1.36134 * 120.83608 * 0.02562 * 7 6 5 9 9 C 1.40553 * 119.61823 * 359.96222 * 8 7 6 10 10 C 1.40491 * 121.22340 * 180.02562 * 9 8 7 11 11 C 1.39054 * 117.95949 * 180.02562 * 10 9 8 12 12 C 1.47763 * 120.26636 * 179.97438 * 11 10 9 13 13 O 1.21564 * 119.99953 * 139.32778 * 12 11 10 14 14 N 1.34774 * 119.99516 * 319.32638 * 12 11 10 15 15 C 1.47419 * 125.65454 * 5.36966 * 14 12 11 16 16 C 1.55119 * 104.94640 * 204.03932 * 15 14 12 17 17 C 1.55164 * 101.48044 * 323.21960 * 16 15 14 18 18 H 1.09000 * 110.71787 * 276.82767 * 17 16 15 19 19 N 1.46501 * 110.72068 * 153.73885 * 17 16 15 20 20 C 1.46506 * 119.99606 * 302.43955 * 19 17 16 21 21 C 1.36937 * 120.00368 * 122.71195 * 19 17 16 22 22 H 1.07996 * 120.00264 * 325.04861 * 21 19 17 23 23 C 1.38811 * 120.00081 * 145.04574 * 21 19 17 24 24 N 1.31615 * 120.00396 * 157.93527 * 23 21 19 25 25 Si 1.86809 * 119.99823 * 337.93834 * 23 21 19 26 26 H 1.48501 * 109.46978 * 95.40279 * 25 23 21 27 27 H 1.48501 * 109.47095 * 215.40122 * 25 23 21 28 28 H 1.48501 * 109.47157 * 335.40136 * 25 23 21 29 29 C 1.47024 * 125.64286 * 185.40632 * 14 12 11 30 30 H 1.09001 * 109.46593 * 265.50478 * 1 2 3 31 31 H 1.08994 * 109.47107 * 25.50728 * 1 2 3 32 32 H 1.08997 * 109.46944 * 145.50886 * 1 2 3 33 33 H 1.07996 * 120.09772 * 0.04605 * 5 4 3 34 34 H 1.08004 * 119.45058 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.58327 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.19282 * 180.02562 * 8 7 6 37 37 H 1.07996 * 121.02216 * 359.97438 * 10 9 8 38 38 H 1.09005 * 110.36628 * 322.99888 * 15 14 12 39 39 H 1.08996 * 110.36980 * 85.21026 * 15 14 12 40 40 H 1.08995 * 111.16775 * 205.12971 * 16 15 14 41 41 H 1.08999 * 110.94031 * 81.20913 * 16 15 14 42 42 H 1.08997 * 109.47295 * 84.70100 * 20 19 17 43 43 H 1.09000 * 109.46505 * 204.70001 * 20 19 17 44 44 H 1.08998 * 109.47028 * 324.69701 * 20 19 17 45 45 H 0.96998 * 120.00610 * 179.97438 * 24 23 21 46 46 H 1.08999 * 109.88662 * 59.49231 * 29 14 12 47 47 H 1.09000 * 109.88486 * 298.32015 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1998 -0.0049 5 6 4.1494 2.4368 -0.0102 6 6 5.5103 2.4719 -0.0156 7 6 6.2605 1.2976 -0.0155 8 6 5.6513 0.0803 -0.0105 9 6 4.2477 0.0060 -0.0045 10 6 3.5840 -1.2322 0.0014 11 6 2.1935 -1.2266 0.0065 12 6 1.4435 -2.4997 0.0123 13 8 0.4496 -2.6166 0.7024 14 7 1.8615 -3.5313 -0.7477 15 6 3.1036 -3.5664 -1.5408 16 6 2.8365 -4.6103 -2.6567 17 6 1.9902 -5.6654 -1.8963 18 1 2.6337 -6.3535 -1.3481 19 7 1.1210 -6.3971 -2.8212 20 6 0.1589 -5.6696 -3.6527 21 6 1.2040 -7.7614 -2.9045 22 1 2.1590 -8.2523 -2.7898 23 6 0.0604 -8.5134 -3.1362 24 7 0.1605 -9.7250 -3.6404 25 14 -1.6206 -7.8057 -2.7324 26 1 -2.2096 -7.2011 -3.9542 27 1 -2.5083 -8.8891 -2.2389 28 1 -1.4802 -6.7643 -1.6830 29 6 1.1536 -4.8079 -0.9235 30 1 -0.3632 -0.0805 1.0245 31 1 -0.3633 0.9274 -0.4425 32 1 -0.3633 -0.8470 -0.5819 33 1 3.5840 3.3569 -0.0096 34 1 6.0169 3.4257 -0.0193 35 1 7.3391 1.3540 -0.0195 36 1 6.2429 -0.8232 -0.0100 37 1 4.1367 -2.1600 0.0010 38 1 3.3035 -2.5872 -1.9762 39 1 3.9416 -3.8828 -0.9197 40 1 3.7676 -5.0447 -3.0204 41 1 2.2673 -4.1689 -3.4748 42 1 0.6546 -5.3152 -4.5564 43 1 -0.6613 -6.3339 -3.9248 44 1 -0.2325 -4.8185 -3.0953 45 1 -0.6386 -10.2506 -3.8020 46 1 0.1644 -4.6284 -1.3445 47 1 1.0637 -5.3172 0.0360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971628548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:11 Heat of formation + Delta-G solvation = 40.789091 kcal Electronic energy + Delta-G solvation = -29230.577119 eV Core-core repulsion = 25378.578095 eV Total energy + Delta-G solvation = -3851.999024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22659 -40.92797 -39.19321 -38.02048 -36.75369 -34.78929 -33.75889 -32.97947 -31.94993 -31.09452 -29.61144 -28.82286 -28.12523 -26.36979 -24.96030 -23.80130 -23.59893 -23.10391 -21.30109 -20.79213 -19.33599 -19.04930 -18.29639 -17.94100 -17.72905 -17.10090 -16.85536 -16.39073 -16.02391 -15.57053 -15.44873 -15.27055 -15.12268 -14.88205 -14.60005 -14.42184 -14.34839 -14.13791 -14.08050 -13.87751 -13.66558 -13.39912 -13.30257 -13.12667 -12.70455 -12.56904 -12.44777 -12.40375 -12.37545 -12.32617 -12.06594 -11.72638 -11.60805 -11.44645 -11.26423 -10.68201 -10.58435 -9.87040 -9.66121 -9.25965 -8.87821 -8.23450 -5.60172 -0.79594 -0.42162 0.85598 1.26006 1.39718 1.41370 1.48218 1.72151 2.03793 2.37013 3.00599 3.01182 3.06105 3.23323 3.27615 3.49041 3.56785 3.72983 3.80078 3.85105 4.05126 4.20537 4.22485 4.23785 4.32138 4.36041 4.38839 4.44737 4.51271 4.58640 4.61078 4.66657 4.67918 4.75737 4.84582 4.88560 4.92106 4.95001 5.03538 5.13455 5.14698 5.22723 5.33484 5.37336 5.43340 5.49227 5.87287 5.88370 6.14711 6.36378 6.78492 6.88671 6.94049 7.56468 7.97849 8.95701 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002756 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.771580 B =10156.683474 C =11022.135017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.190 3.810 3 N -0.498 5.498 4 C 0.121 3.879 5 C -0.124 4.124 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.086 4.086 9 C -0.129 4.129 10 C -0.003 4.003 11 C -0.197 4.197 12 C 0.575 3.425 13 O -0.570 6.570 14 N -0.604 5.604 15 C 0.098 3.902 16 C -0.137 4.137 17 C 0.166 3.834 18 H 0.089 0.911 19 N -0.608 5.608 20 C 0.106 3.894 21 C -0.255 4.255 22 H 0.059 0.941 23 C -0.018 4.018 24 N -0.943 5.943 25 Si 0.938 3.062 26 H -0.276 1.276 27 H -0.311 1.311 28 H -0.267 1.267 29 C 0.092 3.908 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.029 0.971 44 H 0.046 0.954 45 H 0.263 0.737 46 H 0.049 0.951 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.403 25.912 6.282 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.037 3.963 3 N -0.207 5.207 4 C 0.000 4.000 5 C -0.143 4.143 6 C -0.096 4.096 7 C -0.136 4.136 8 C -0.105 4.105 9 C -0.131 4.131 10 C -0.029 4.029 11 C -0.202 4.202 12 C 0.364 3.636 13 O -0.451 6.451 14 N -0.337 5.337 15 C -0.023 4.023 16 C -0.177 4.177 17 C 0.058 3.942 18 H 0.107 0.893 19 N -0.331 5.331 20 C -0.038 4.038 21 C -0.385 4.385 22 H 0.077 0.923 23 C -0.215 4.215 24 N -0.588 5.588 25 Si 0.768 3.232 26 H -0.204 1.204 27 H -0.240 1.240 28 H -0.192 1.192 29 C -0.033 4.033 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.385 26.601 6.616 30.956 hybrid contribution -1.296 -1.213 0.184 1.785 sum 13.089 25.387 6.800 29.361 Atomic orbital electron populations 1.20747 0.87905 1.03258 1.03686 1.21500 0.97590 0.86720 0.90489 1.67845 1.09592 1.27765 1.15542 1.19466 0.88813 0.94754 0.96964 1.21008 0.95458 0.95712 1.02080 1.21424 0.92755 1.00710 0.94670 1.21409 1.02256 0.91512 0.98415 1.21426 0.91113 1.00671 0.97245 1.19006 0.96407 0.92782 1.04913 1.22424 0.92019 0.99262 0.89196 1.20559 0.95332 0.93468 1.10825 1.17991 0.83844 0.82765 0.79001 1.90774 1.28389 1.83168 1.42737 1.48438 1.24532 1.14477 1.46210 1.22814 0.86062 1.00824 0.92643 1.23230 1.01578 0.95565 0.97307 1.21650 0.91066 0.92265 0.89225 0.89323 1.44147 1.43670 1.02609 1.42649 1.21359 0.92570 0.95258 0.94597 1.18765 0.93252 0.81641 1.44828 0.92315 1.25964 1.01031 0.95495 0.98984 1.69949 1.30010 1.13075 1.45721 0.85994 0.81574 0.76970 0.78660 1.20358 1.23967 1.19180 1.22559 0.96868 0.83842 0.99993 0.89833 0.89353 0.91597 0.84288 0.82017 0.81859 0.82011 0.80808 0.88884 0.87849 0.87899 0.91222 0.94467 0.95250 0.93509 0.92748 0.93287 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 8.85 71.24 0.63 -1.93 16 2 C 0.19 5.17 6.81 43.28 0.29 5.47 16 3 N -0.50 -13.09 10.20 -175.85 -1.79 -14.88 16 4 C 0.12 2.65 6.61 40.29 0.27 2.92 16 5 C -0.12 -1.99 9.97 22.34 0.22 -1.76 16 6 C -0.08 -0.72 9.94 22.05 0.22 -0.50 16 7 C -0.12 -0.93 9.96 22.05 0.22 -0.71 16 8 C -0.09 -0.92 9.77 22.34 0.22 -0.71 16 9 C -0.13 -2.33 5.74 -21.28 -0.12 -2.45 16 10 C 0.00 -0.06 7.80 23.01 0.18 0.12 16 11 C -0.20 -5.07 5.43 -20.00 -0.11 -5.18 16 12 C 0.57 17.81 6.77 86.76 0.59 18.40 16 13 O -0.57 -21.92 15.49 -3.92 -0.06 -21.98 16 14 N -0.60 -17.21 3.33 -814.88 -2.71 -19.92 16 15 C 0.10 1.95 5.24 86.93 0.46 2.41 16 16 C -0.14 -3.45 6.66 32.06 0.21 -3.24 16 17 C 0.17 5.73 3.44 46.18 0.16 5.89 16 18 H 0.09 3.07 7.95 -2.39 -0.02 3.05 16 19 N -0.61 -26.85 2.55 -696.14 -1.77 -28.62 16 20 C 0.11 4.38 8.21 127.77 1.05 5.43 16 21 C -0.26 -13.73 9.90 84.03 0.83 -12.90 16 22 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 23 C -0.02 -1.02 5.30 84.86 0.45 -0.57 16 24 N -0.94 -57.63 13.97 21.65 0.30 -57.33 16 25 Si 0.94 46.49 24.88 68.60 1.71 48.19 16 26 H -0.28 -13.08 6.66 99.48 0.66 -12.41 16 27 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 28 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 29 C 0.09 3.22 6.46 86.73 0.56 3.78 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.87 6.77 -2.39 -0.02 1.86 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.16 0.23 8.06 -2.91 -0.02 0.20 16 36 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.17 2.22 5.94 -2.91 -0.02 2.20 16 38 H 0.09 1.55 6.71 -2.38 -0.02 1.53 16 39 H 0.10 1.44 7.35 -2.39 -0.02 1.42 16 40 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 1.88 7.06 -2.39 -0.02 1.86 16 42 H 0.04 1.40 7.88 -2.39 -0.02 1.38 16 43 H 0.03 1.34 3.14 -2.39 -0.01 1.33 16 44 H 0.05 1.77 6.22 -2.39 -0.01 1.75 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.05 1.94 6.06 -2.39 -0.01 1.92 16 47 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.71 370.41 2.95 -71.77 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.95 Total: 8.32 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.33 Total: 14.45 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.98 Total: -120.75 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.06 Total: -21.98 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.71 Total: 48.19 kcal Total: -74.71 2.95 -71.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971628548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.555 kcal (2) G-P(sol) polarization free energy of solvation -74.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds