Wall clock time and date at job start Tue Mar 31 2020 22:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30824 * 119.23073 * 2 1 4 4 C 1.33796 * 121.71616 * 179.97438 * 3 2 1 5 5 C 1.40526 * 120.82405 * 180.02562 * 4 3 2 6 6 C 1.36133 * 119.81491 * 179.97438 * 5 4 3 7 7 C 1.39349 * 121.09315 * 359.97438 * 6 5 4 8 8 C 1.36146 * 120.83414 * 0.04267 * 7 6 5 9 9 C 1.40548 * 119.61822 * 359.95132 * 8 7 6 10 10 C 1.40491 * 121.22134 * 180.27972 * 9 8 7 11 11 C 1.39042 * 117.96450 * 180.21558 * 10 9 8 12 12 C 1.47761 * 120.27189 * 179.79103 * 11 10 9 13 13 O 1.21554 * 120.00079 * 229.71365 * 12 11 10 14 14 N 1.34777 * 119.99826 * 49.70965 * 12 11 10 15 15 C 1.47424 * 125.64883 * 354.95689 * 14 12 11 16 16 C 1.54912 * 104.83373 * 155.82485 * 15 14 12 17 17 C 1.55156 * 101.58072 * 37.00669 * 16 15 14 18 18 H 1.08992 * 110.71953 * 83.04178 * 17 16 15 19 19 N 1.46504 * 110.71931 * 206.13746 * 17 16 15 20 20 C 1.46504 * 120.00047 * 59.99950 * 19 17 16 21 21 C 1.36929 * 119.99837 * 240.00306 * 19 17 16 22 22 H 1.07995 * 120.00349 * 333.01112 * 21 19 17 23 23 C 1.38816 * 119.99990 * 152.73901 * 21 19 17 24 24 N 1.31618 * 120.00120 * 349.95362 * 23 21 19 25 25 Si 1.86796 * 120.00084 * 169.94716 * 23 21 19 26 26 H 1.48504 * 109.47103 * 60.00276 * 25 23 21 27 27 H 1.48498 * 109.47597 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47405 * 300.00310 * 25 23 21 29 29 C 1.47020 * 125.65021 * 174.89505 * 14 12 11 30 30 H 1.09003 * 109.47521 * 273.76561 * 1 2 3 31 31 H 1.09007 * 109.46811 * 33.76132 * 1 2 3 32 32 H 1.08998 * 109.47423 * 153.76404 * 1 2 3 33 33 H 1.07998 * 120.09392 * 0.02562 * 5 4 3 34 34 H 1.07992 * 119.45364 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.58152 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.18718 * 179.97438 * 8 7 6 37 37 H 1.08007 * 121.01986 * 0.02562 * 10 9 8 38 38 H 1.09003 * 110.37239 * 36.98276 * 15 14 12 39 39 H 1.09007 * 110.46064 * 274.70733 * 15 14 12 40 40 H 1.09007 * 111.00171 * 278.93316 * 16 15 14 41 41 H 1.09002 * 111.03989 * 155.09890 * 16 15 14 42 42 H 1.09002 * 109.47183 * 271.84222 * 20 19 17 43 43 H 1.09003 * 109.47126 * 31.83075 * 20 19 17 44 44 H 1.08990 * 109.47089 * 151.83574 * 20 19 17 45 45 H 0.96993 * 120.00446 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.87967 * 61.68790 * 29 14 12 47 47 H 1.09003 * 109.88443 * 300.52723 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4826 1.1997 0.0005 5 6 4.1496 2.4365 0.0010 6 6 5.5105 2.4716 0.0021 7 6 6.2606 1.2972 0.0032 8 6 5.6511 0.0798 0.0023 9 6 4.2476 0.0058 0.0014 10 6 3.5837 -1.2324 0.0064 11 6 2.1933 -1.2267 0.0005 12 6 1.4432 -2.4998 0.0007 13 8 0.5516 -2.6800 -0.8056 14 7 1.7477 -3.4611 0.8949 15 6 2.8664 -3.4192 1.8541 16 6 2.4391 -4.3660 3.0034 17 6 1.7080 -5.4912 2.2245 18 1 2.4219 -6.2163 1.8338 19 7 0.7156 -6.1510 3.0766 20 6 -0.3847 -5.3757 3.6549 21 6 0.8166 -7.4924 3.3325 22 1 1.3057 -8.1424 2.6222 23 6 0.2951 -8.0159 4.5077 24 7 -0.1168 -7.2085 5.4620 25 14 0.1779 -9.8663 4.7346 26 1 1.5351 -10.4627 4.6474 27 1 -0.4103 -10.1657 6.0649 28 1 -0.6849 -10.4418 3.6717 29 6 1.0184 -4.7248 1.0762 30 1 -0.3634 0.0675 1.0254 31 1 -0.3633 0.8544 -0.5712 32 1 -0.3634 -0.9218 -0.4543 33 1 3.5842 3.3567 0.0015 34 1 6.0171 3.4253 0.0029 35 1 7.3392 1.3535 0.0044 36 1 6.2427 -0.8237 0.0028 37 1 4.1364 -2.1603 0.0115 38 1 3.0063 -2.4056 2.2299 39 1 3.7829 -3.7796 1.3867 40 1 1.7602 -3.8629 3.6921 41 1 3.3085 -4.7576 3.5315 42 1 -0.0701 -4.9551 4.6101 43 1 -0.6572 -4.5685 2.9749 44 1 -1.2453 -6.0262 3.8101 45 1 -0.4815 -7.5742 6.2830 46 1 1.0621 -5.3128 0.1593 47 1 -0.0195 -4.5196 1.3383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971628554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:15 Heat of formation + Delta-G solvation = 54.043663 kcal Electronic energy + Delta-G solvation = -29074.674702 eV Core-core repulsion = 25223.250440 eV Total energy + Delta-G solvation = -3851.424262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28846 -39.75345 -37.85908 -37.03641 -34.92697 -33.82601 -32.12788 -31.73080 -30.52126 -29.80964 -28.20042 -27.70493 -26.09484 -25.15355 -23.35928 -22.83336 -22.49537 -22.18411 -20.09734 -19.25057 -18.40022 -17.40410 -17.09873 -16.85487 -16.21288 -15.90930 -15.36619 -15.01379 -14.78271 -14.61526 -14.34278 -14.02234 -13.78503 -13.53016 -13.39216 -13.18094 -13.12510 -12.70611 -12.58715 -12.43566 -12.17005 -12.01478 -11.79031 -11.73769 -11.54514 -11.39408 -11.02084 -10.87131 -10.75136 -10.63687 -10.49115 -10.29886 -10.11419 -9.95649 -9.92423 -9.54918 -8.92505 -8.60967 -8.54827 -8.42514 -6.81511 -5.82963 -3.32535 0.01255 0.42511 1.63036 2.38687 2.80695 3.09889 3.34216 3.40136 3.40889 3.80076 3.93090 4.22246 4.32206 4.41674 4.43736 4.51699 4.71386 4.81272 4.92559 4.96558 5.11475 5.21366 5.27936 5.37409 5.45834 5.47353 5.51195 5.56720 5.60391 5.65423 5.70736 5.79356 5.84921 5.94325 6.00732 6.06087 6.09517 6.21563 6.27703 6.32781 6.48010 6.53180 6.56936 6.79281 6.82501 7.28837 7.57526 7.63774 7.70185 7.73142 8.15947 8.33365 9.14063 9.75035 10.25991 11.23141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.002513 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.771998 B =11141.137815 C =11769.576374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.209 3.791 3 N -0.480 5.480 4 C 0.145 3.855 5 C -0.099 4.099 6 C -0.094 4.094 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.115 4.115 10 C -0.019 4.019 11 C -0.170 4.170 12 C 0.576 3.424 13 O -0.532 6.532 14 N -0.601 5.601 15 C 0.095 3.905 16 C -0.151 4.151 17 C 0.173 3.827 18 H 0.080 0.920 19 N -0.584 5.584 20 C 0.159 3.841 21 C -0.264 4.264 22 H 0.068 0.932 23 C 0.008 3.992 24 N -0.904 5.904 25 Si 0.907 3.093 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.086 3.914 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.000 1.000 44 H 0.051 0.949 45 H 0.255 0.745 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 17.460 -9.557 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.056 3.944 3 N -0.189 5.189 4 C 0.023 3.977 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.142 4.142 8 C -0.104 4.104 9 C -0.117 4.117 10 C -0.045 4.045 11 C -0.175 4.175 12 C 0.363 3.637 13 O -0.411 6.411 14 N -0.334 5.334 15 C -0.028 4.028 16 C -0.191 4.191 17 C 0.062 3.938 18 H 0.098 0.902 19 N -0.305 5.305 20 C 0.014 3.986 21 C -0.393 4.393 22 H 0.086 0.914 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.737 3.263 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.209 1.209 29 C -0.038 4.038 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.018 0.982 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.799 18.175 -9.829 23.315 hybrid contribution 0.583 -1.678 0.366 1.814 sum 11.383 16.497 -9.462 22.164 Atomic orbital electron populations 1.21148 0.87813 1.05771 1.03797 1.21448 0.97397 0.86211 0.89376 1.67869 1.08281 1.27977 1.14760 1.18984 0.89121 0.93037 0.96551 1.20810 0.94214 0.96374 1.00393 1.20960 0.93681 0.98822 0.97942 1.20921 1.00418 0.92269 1.00624 1.21048 0.92429 0.98738 0.98202 1.18759 0.94955 0.93545 1.04417 1.21988 0.92959 0.97817 0.91768 1.20790 0.94400 0.95186 1.07146 1.17602 0.83202 0.82252 0.80647 1.90746 1.32090 1.79889 1.38336 1.48444 1.30942 1.18992 1.35000 1.22501 0.89178 1.00666 0.90476 1.23394 1.01579 0.97435 0.96696 1.21328 0.90731 0.92176 0.89520 0.90217 1.43813 1.25071 1.06085 1.55487 1.20791 0.90694 0.92963 0.94115 1.19143 1.36564 0.82757 1.00884 0.91424 1.25126 1.00959 0.97975 0.95047 1.70029 1.45385 1.33238 1.06067 0.86306 0.77966 0.85038 0.77003 1.20826 1.21593 1.20906 1.22808 0.97653 0.83091 1.00268 0.89949 0.90035 0.87793 0.84621 0.85216 0.85365 0.84982 0.83602 0.91376 0.91491 0.90517 0.90236 0.95760 0.98158 0.92987 0.93513 0.91727 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.82 36.01 0.35 -1.28 16 2 C 0.21 2.92 6.82 -82.14 -0.56 2.36 16 3 N -0.48 -6.60 10.20 -6.94 -0.07 -6.67 16 4 C 0.14 1.77 6.61 -84.79 -0.56 1.21 16 5 C -0.10 -0.96 9.97 -39.48 -0.39 -1.35 16 6 C -0.09 -0.69 9.94 -39.92 -0.40 -1.09 16 7 C -0.12 -0.88 9.96 -39.92 -0.40 -1.28 16 8 C -0.09 -0.71 9.77 -39.46 -0.39 -1.10 16 9 C -0.11 -1.27 5.74 -106.82 -0.61 -1.89 16 10 C -0.02 -0.22 8.04 -38.44 -0.31 -0.53 16 11 C -0.17 -2.35 5.17 -104.83 -0.54 -2.89 16 12 C 0.58 9.17 6.83 -12.37 -0.08 9.09 16 13 O -0.53 -9.96 15.10 5.32 0.08 -9.88 16 14 N -0.60 -9.31 3.33 -171.66 -0.57 -9.88 16 15 C 0.09 1.24 5.48 -2.53 -0.01 1.23 16 16 C -0.15 -2.45 6.66 -24.58 -0.16 -2.61 16 17 C 0.17 3.27 3.45 -66.10 -0.23 3.04 16 18 H 0.08 1.48 7.95 -51.93 -0.41 1.06 16 19 N -0.58 -13.82 2.92 -171.39 -0.50 -14.32 16 20 C 0.16 3.76 7.89 59.85 0.47 4.23 16 21 C -0.26 -6.91 9.56 -15.06 -0.14 -7.05 16 22 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 23 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16 24 N -0.90 -25.42 10.86 55.49 0.60 -24.82 16 25 Si 0.91 21.14 29.57 -169.99 -5.03 16.11 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 C 0.09 1.51 6.45 -3.07 -0.02 1.49 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.49 5.32 -51.93 -0.28 1.22 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.15 1.35 6.87 -52.48 -0.36 0.99 16 38 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 39 H 0.07 0.72 7.60 -51.92 -0.39 0.33 16 40 H 0.08 1.39 7.25 -51.93 -0.38 1.01 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.61 7.54 -51.93 -0.39 0.22 16 43 H 0.00 0.00 6.06 -51.93 -0.31 -0.31 16 44 H 0.05 1.34 7.09 -51.93 -0.37 0.98 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 1.51 5.91 -51.93 -0.31 1.21 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -31.23 376.17 -10.39 -41.62 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.50 Total: 0.45 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -4.07 Total: 1.72 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.54 Total: -55.70 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.23 -10.39 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971628554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.662 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds