Wall clock time and date at job start Tue Mar 31 2020 22:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30824 * 119.23073 * 2 1 4 4 C 1.33796 * 121.71616 * 179.97438 * 3 2 1 5 5 C 1.40526 * 120.82405 * 180.02562 * 4 3 2 6 6 C 1.36133 * 119.81491 * 179.97438 * 5 4 3 7 7 C 1.39349 * 121.09315 * 359.97438 * 6 5 4 8 8 C 1.36146 * 120.83414 * 0.04267 * 7 6 5 9 9 C 1.40548 * 119.61822 * 359.95132 * 8 7 6 10 10 C 1.40491 * 121.22134 * 180.27972 * 9 8 7 11 11 C 1.39042 * 117.96450 * 180.21558 * 10 9 8 12 12 C 1.47761 * 120.27189 * 179.79103 * 11 10 9 13 13 O 1.21554 * 120.00079 * 229.71365 * 12 11 10 14 14 N 1.34777 * 119.99826 * 49.70965 * 12 11 10 15 15 C 1.47424 * 125.64883 * 354.95689 * 14 12 11 16 16 C 1.54912 * 104.83373 * 155.82485 * 15 14 12 17 17 C 1.55156 * 101.58072 * 37.00669 * 16 15 14 18 18 H 1.08992 * 110.71953 * 83.04178 * 17 16 15 19 19 N 1.46504 * 110.71931 * 206.13746 * 17 16 15 20 20 C 1.46504 * 120.00047 * 59.99950 * 19 17 16 21 21 C 1.36929 * 119.99837 * 240.00306 * 19 17 16 22 22 H 1.07995 * 120.00349 * 333.01112 * 21 19 17 23 23 C 1.38816 * 119.99990 * 152.73901 * 21 19 17 24 24 N 1.31618 * 120.00120 * 349.95362 * 23 21 19 25 25 Si 1.86796 * 120.00084 * 169.94716 * 23 21 19 26 26 H 1.48504 * 109.47103 * 60.00276 * 25 23 21 27 27 H 1.48498 * 109.47597 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47405 * 300.00310 * 25 23 21 29 29 C 1.47020 * 125.65021 * 174.89505 * 14 12 11 30 30 H 1.09003 * 109.47521 * 273.76561 * 1 2 3 31 31 H 1.09007 * 109.46811 * 33.76132 * 1 2 3 32 32 H 1.08998 * 109.47423 * 153.76404 * 1 2 3 33 33 H 1.07998 * 120.09392 * 0.02562 * 5 4 3 34 34 H 1.07992 * 119.45364 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.58152 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.18718 * 179.97438 * 8 7 6 37 37 H 1.08007 * 121.01986 * 0.02562 * 10 9 8 38 38 H 1.09003 * 110.37239 * 36.98276 * 15 14 12 39 39 H 1.09007 * 110.46064 * 274.70733 * 15 14 12 40 40 H 1.09007 * 111.00171 * 278.93316 * 16 15 14 41 41 H 1.09002 * 111.03989 * 155.09890 * 16 15 14 42 42 H 1.09002 * 109.47183 * 271.84222 * 20 19 17 43 43 H 1.09003 * 109.47126 * 31.83075 * 20 19 17 44 44 H 1.08990 * 109.47089 * 151.83574 * 20 19 17 45 45 H 0.96993 * 120.00446 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.87967 * 61.68790 * 29 14 12 47 47 H 1.09003 * 109.88443 * 300.52723 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4826 1.1997 0.0005 5 6 4.1496 2.4365 0.0010 6 6 5.5105 2.4716 0.0021 7 6 6.2606 1.2972 0.0032 8 6 5.6511 0.0798 0.0023 9 6 4.2476 0.0058 0.0014 10 6 3.5837 -1.2324 0.0064 11 6 2.1933 -1.2267 0.0005 12 6 1.4432 -2.4998 0.0007 13 8 0.5516 -2.6800 -0.8056 14 7 1.7477 -3.4611 0.8949 15 6 2.8664 -3.4192 1.8541 16 6 2.4391 -4.3660 3.0034 17 6 1.7080 -5.4912 2.2245 18 1 2.4219 -6.2163 1.8338 19 7 0.7156 -6.1510 3.0766 20 6 -0.3847 -5.3757 3.6549 21 6 0.8166 -7.4924 3.3325 22 1 1.3057 -8.1424 2.6222 23 6 0.2951 -8.0159 4.5077 24 7 -0.1168 -7.2085 5.4620 25 14 0.1779 -9.8663 4.7346 26 1 1.5351 -10.4627 4.6474 27 1 -0.4103 -10.1657 6.0649 28 1 -0.6849 -10.4418 3.6717 29 6 1.0184 -4.7248 1.0762 30 1 -0.3634 0.0675 1.0254 31 1 -0.3633 0.8544 -0.5712 32 1 -0.3634 -0.9218 -0.4543 33 1 3.5842 3.3567 0.0015 34 1 6.0171 3.4253 0.0029 35 1 7.3392 1.3535 0.0044 36 1 6.2427 -0.8237 0.0028 37 1 4.1364 -2.1603 0.0115 38 1 3.0063 -2.4056 2.2299 39 1 3.7829 -3.7796 1.3867 40 1 1.7602 -3.8629 3.6921 41 1 3.3085 -4.7576 3.5315 42 1 -0.0701 -4.9551 4.6101 43 1 -0.6572 -4.5685 2.9749 44 1 -1.2453 -6.0262 3.8101 45 1 -0.4815 -7.5742 6.2830 46 1 1.0621 -5.3128 0.1593 47 1 -0.0195 -4.5196 1.3383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971628554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:15 Heat of formation + Delta-G solvation = 36.401367 kcal Electronic energy + Delta-G solvation = -29075.439729 eV Core-core repulsion = 25223.250440 eV Total energy + Delta-G solvation = -3852.189290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19972 -40.90742 -39.11143 -38.00448 -36.60546 -34.75418 -33.41796 -32.96841 -31.64592 -31.03648 -29.41816 -28.77186 -28.06519 -26.24505 -24.82775 -23.76898 -23.61165 -23.10849 -21.26584 -20.74793 -19.30741 -18.93738 -18.34737 -17.91276 -17.52028 -16.97263 -16.59879 -16.31717 -15.81673 -15.64139 -15.37530 -15.19811 -15.08518 -14.96714 -14.48644 -14.40878 -14.13951 -14.06617 -13.99167 -13.69110 -13.32546 -13.12767 -12.94702 -12.84245 -12.70471 -12.56216 -12.41264 -12.38927 -12.31623 -12.25312 -12.07228 -11.86638 -11.68741 -11.43005 -11.22684 -10.62504 -10.55976 -9.80445 -9.67150 -9.25431 -8.76101 -7.85510 -5.36674 -0.76961 -0.40428 0.87257 1.38884 1.48744 1.51356 1.57169 1.73284 2.02216 2.51361 3.01239 3.07646 3.24041 3.32502 3.50379 3.55396 3.57501 3.79671 3.85003 3.88010 4.08202 4.22424 4.26282 4.29426 4.33026 4.37516 4.41228 4.55119 4.59342 4.60183 4.69059 4.72096 4.79495 4.88587 4.93607 4.96661 5.04656 5.12827 5.16332 5.22305 5.32820 5.36693 5.37703 5.44477 5.49453 5.63619 5.67067 5.87842 6.33230 6.38491 6.79237 6.93187 7.13507 7.82291 8.29585 9.19373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.002513 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.771998 B =11141.137815 C =11769.576374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.189 3.811 3 N -0.498 5.498 4 C 0.120 3.880 5 C -0.123 4.123 6 C -0.077 4.077 7 C -0.118 4.118 8 C -0.087 4.087 9 C -0.128 4.128 10 C -0.003 4.003 11 C -0.195 4.195 12 C 0.580 3.420 13 O -0.569 6.569 14 N -0.602 5.602 15 C 0.105 3.895 16 C -0.142 4.142 17 C 0.168 3.832 18 H 0.088 0.912 19 N -0.601 5.601 20 C 0.179 3.821 21 C -0.268 4.268 22 H 0.074 0.926 23 C -0.046 4.046 24 N -0.936 5.936 25 Si 0.969 3.031 26 H -0.271 1.271 27 H -0.297 1.297 28 H -0.281 1.281 29 C 0.098 3.902 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.172 0.828 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.003 0.997 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.249 0.751 46 H 0.064 0.936 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.876 18.391 -10.408 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.036 3.964 3 N -0.207 5.207 4 C -0.001 4.001 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.136 4.136 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.029 4.029 11 C -0.200 4.200 12 C 0.369 3.631 13 O -0.449 6.449 14 N -0.334 5.334 15 C -0.017 4.017 16 C -0.182 4.182 17 C 0.059 3.941 18 H 0.107 0.893 19 N -0.322 5.322 20 C 0.034 3.966 21 C -0.398 4.398 22 H 0.092 0.908 23 C -0.242 4.242 24 N -0.581 5.581 25 Si 0.797 3.203 26 H -0.197 1.197 27 H -0.223 1.223 28 H -0.207 1.207 29 C -0.027 4.027 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.179 0.821 37 H 0.189 0.811 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.021 0.979 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.915 19.129 -10.702 26.513 hybrid contribution -0.515 -1.801 0.555 1.953 sum 14.400 17.328 -10.148 24.711 Atomic orbital electron populations 1.21050 0.88061 1.05005 1.03903 1.21492 0.97620 0.86677 0.90589 1.67841 1.09580 1.27832 1.15480 1.19459 0.88826 0.94740 0.97113 1.21008 0.95467 0.95699 1.02022 1.21417 0.92744 1.00692 0.94795 1.21407 1.02240 0.91496 0.98410 1.21414 0.91129 1.00645 0.97380 1.18993 0.96397 0.92793 1.04827 1.22265 0.91906 0.99143 0.89603 1.20553 0.95390 0.93605 1.10458 1.17918 0.82685 0.82675 0.79853 1.90721 1.33777 1.80564 1.39884 1.48442 1.31375 1.18134 1.35400 1.22609 0.89372 1.00893 0.88836 1.23218 1.01094 0.96790 0.97126 1.21490 0.90177 0.93080 0.89340 0.89344 1.43969 1.26346 1.05849 1.56030 1.20447 0.89885 0.92634 0.93669 1.19503 1.35528 0.84140 1.00672 0.90789 1.25862 1.01432 1.01855 0.95072 1.70189 1.46836 1.34707 1.06379 0.85318 0.78171 0.80453 0.76310 1.19684 1.22322 1.20690 1.22451 0.96448 0.84162 0.99621 0.89674 0.89202 0.89771 0.84281 0.81982 0.81848 0.82135 0.81087 0.89808 0.87765 0.92849 0.89140 0.97921 0.96268 0.95960 0.94200 0.91785 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 9.82 71.24 0.70 -2.62 16 2 C 0.19 5.40 6.82 43.28 0.29 5.69 16 3 N -0.50 -13.77 10.20 -175.85 -1.79 -15.57 16 4 C 0.12 2.79 6.61 40.28 0.27 3.05 16 5 C -0.12 -2.13 9.97 22.34 0.22 -1.90 16 6 C -0.08 -0.82 9.94 22.05 0.22 -0.60 16 7 C -0.12 -1.07 9.96 22.05 0.22 -0.85 16 8 C -0.09 -1.06 9.77 22.35 0.22 -0.84 16 9 C -0.13 -2.50 5.74 -21.29 -0.12 -2.63 16 10 C 0.00 -0.07 8.04 23.01 0.18 0.12 16 11 C -0.19 -5.29 5.17 -20.00 -0.10 -5.40 16 12 C 0.58 18.50 6.83 86.76 0.59 19.09 16 13 O -0.57 -22.00 15.10 -3.89 -0.06 -22.06 16 14 N -0.60 -18.11 3.33 -815.28 -2.71 -20.83 16 15 C 0.10 2.48 5.48 86.86 0.48 2.95 16 16 C -0.14 -4.44 6.66 31.99 0.21 -4.22 16 17 C 0.17 6.24 3.45 46.18 0.16 6.40 16 18 H 0.09 3.14 7.95 -2.39 -0.02 3.12 16 19 N -0.60 -28.82 2.92 -696.16 -2.03 -30.85 16 20 C 0.18 8.79 7.89 127.77 1.01 9.80 16 21 C -0.27 -14.11 9.56 84.04 0.80 -13.31 16 22 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 23 C -0.05 -2.52 5.10 84.86 0.43 -2.09 16 24 N -0.94 -54.10 10.86 21.65 0.24 -53.86 16 25 Si 0.97 43.82 29.57 68.60 2.03 45.84 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 C 0.10 3.46 6.45 86.73 0.56 4.02 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.08 2.60 5.32 -2.39 -0.01 2.59 16 33 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 36 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.17 2.46 6.87 -2.91 -0.02 2.44 16 38 H 0.08 1.79 7.08 -2.39 -0.02 1.78 16 39 H 0.10 1.77 7.60 -2.38 -0.02 1.75 16 40 H 0.05 1.93 7.25 -2.38 -0.02 1.91 16 41 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.00 0.13 7.54 -2.39 -0.02 0.12 16 43 H 0.02 0.85 6.06 -2.39 -0.01 0.84 16 44 H 0.02 1.19 7.09 -2.39 -0.02 1.17 16 45 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 47 H 0.05 2.12 5.91 -2.39 -0.01 2.10 16 Total: -1.00 -71.25 376.17 3.00 -68.26 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.99 Total: 12.41 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.34 Total: 16.66 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.31 Total: -121.11 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.25 3.00 -68.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971628554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.659 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds