Wall clock time and date at job start Tue Mar 31 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39230 * 119.15266 * 2 1 4 4 C 1.36638 * 119.90587 * 180.02562 * 3 2 1 5 5 C 1.40796 * 118.15799 * 0.02562 * 4 3 2 6 6 C 1.40474 * 121.26541 * 179.97438 * 5 4 3 7 7 C 1.36313 * 120.08521 * 179.97438 * 6 5 4 8 8 C 1.38912 * 121.05624 * 0.03973 * 7 6 5 9 9 C 1.38705 * 120.72915 * 0.02562 * 8 7 6 10 10 C 1.47434 * 120.33591 * 179.97438 * 9 8 7 11 11 O 1.21603 * 120.00400 * 133.17367 * 10 9 8 12 12 N 1.34780 * 119.99978 * 313.17535 * 10 9 8 13 13 C 1.47028 * 125.64511 * 4.92540 * 12 10 9 14 14 C 1.54323 * 107.26838 * 181.02240 * 13 12 10 15 15 C 1.55155 * 102.94365 * 22.19246 * 14 13 12 16 16 H 1.09003 * 111.01002 * 82.61220 * 15 14 13 17 17 N 1.46506 * 111.00476 * 206.42457 * 15 14 13 18 18 C 1.46494 * 119.99860 * 59.99800 * 17 15 14 19 19 C 1.36938 * 119.99633 * 239.99829 * 17 15 14 20 20 H 1.07992 * 120.00249 * 24.06287 * 19 17 15 21 21 C 1.38814 * 119.99770 * 204.05412 * 19 17 15 22 22 N 1.31630 * 119.99829 * 9.44556 * 21 19 17 23 23 Si 1.86793 * 120.00268 * 189.44240 * 21 19 17 24 24 H 1.48504 * 109.47212 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47363 * 120.00450 * 23 21 19 26 26 H 1.48506 * 109.47128 * 240.00222 * 23 21 19 27 27 C 1.47423 * 125.65110 * 184.61506 * 12 10 9 28 28 C 1.41552 * 118.93910 * 0.02562 * 5 4 3 29 29 N 1.31235 * 119.15948 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46885 * 90.00320 * 1 2 3 31 31 H 1.09001 * 109.47216 * 209.99988 * 1 2 3 32 32 H 1.08994 * 109.47439 * 329.99768 * 1 2 3 33 33 H 1.08001 * 120.05107 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.92192 * 179.72471 * 4 3 2 35 35 H 1.07993 * 119.95516 * 359.96953 * 6 5 4 36 36 H 1.07998 * 119.47431 * 180.02562 * 7 6 5 37 37 H 1.08001 * 119.63399 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.87920 * 300.43636 * 13 12 10 39 39 H 1.08995 * 109.88612 * 61.44898 * 13 12 10 40 40 H 1.09007 * 110.72147 * 140.55444 * 14 13 12 41 41 H 1.09001 * 110.72119 * 263.64893 * 14 13 12 42 42 H 1.09000 * 109.47209 * 94.80661 * 18 17 15 43 43 H 1.09001 * 109.47165 * 214.80442 * 18 17 15 44 44 H 1.08999 * 109.47289 * 334.80461 * 18 17 15 45 45 H 0.97001 * 119.99619 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.36573 * 274.74829 * 27 12 10 47 47 H 1.09005 * 110.36231 * 37.06811 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2322 0.0014 -0.0016 6 6 5.6357 -0.0563 -0.0028 7 6 6.2700 -1.2629 -0.0033 8 6 5.5501 -2.4509 -0.0035 9 6 4.1631 -2.4392 -0.0038 10 6 3.4078 -3.7053 -0.0046 11 8 2.4773 -3.8588 0.7631 12 7 3.7486 -4.6928 -0.8563 13 6 4.9074 -4.6820 -1.7611 14 6 4.8794 -6.0037 -2.5572 15 6 3.3920 -6.4350 -2.4625 16 1 2.7883 -5.9237 -3.2124 17 7 3.2578 -7.8886 -2.5864 18 6 3.9188 -8.7701 -1.6209 19 6 2.5145 -8.4232 -3.6047 20 1 2.3544 -7.8579 -4.5108 21 6 1.9669 -9.6918 -3.4722 22 7 2.0011 -10.3052 -2.3080 23 14 1.1813 -10.5286 -4.9459 24 1 1.2704 -9.6347 -6.1284 25 1 1.8935 -11.8000 -5.2311 26 1 -0.2452 -10.8161 -4.6497 27 6 3.0248 -5.9653 -1.0304 28 6 3.4789 -1.1971 -0.0027 29 7 2.1464 -1.1460 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6323 2.1436 -0.0004 34 1 4.0942 2.1676 -0.0050 35 1 6.2129 0.8564 -0.0033 36 1 7.3495 -1.2957 -0.0037 37 1 6.0763 -3.3941 -0.0043 38 1 4.8362 -3.8359 -2.4446 39 1 5.8288 -4.6145 -1.1826 40 1 5.1666 -5.8349 -3.5952 41 1 5.5293 -6.7464 -2.0947 42 1 3.2178 -9.0312 -0.8281 43 1 4.2510 -9.6774 -2.1255 44 1 4.7793 -8.2577 -1.1909 45 1 1.6181 -11.1915 -2.2154 46 1 3.3576 -6.6950 -0.2922 47 1 1.9498 -5.8045 -0.9482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971765316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:23 Heat of formation + Delta-G solvation = 57.213413 kcal Electronic energy + Delta-G solvation = -29073.242248 eV Core-core repulsion = 25221.955437 eV Total energy + Delta-G solvation = -3851.286812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19530 -39.52868 -37.52709 -37.08607 -34.75990 -33.67261 -32.22428 -31.68331 -30.46949 -29.63592 -28.09795 -27.72095 -26.04254 -24.52648 -23.98677 -22.72082 -22.57932 -22.03431 -19.42608 -19.22583 -18.46768 -17.37552 -17.02652 -16.59489 -16.23933 -15.68845 -15.20799 -14.98442 -14.84614 -14.60133 -14.18978 -13.79372 -13.59442 -13.37583 -13.24237 -13.13620 -13.06340 -12.81100 -12.40867 -12.35753 -12.30547 -12.10107 -11.95079 -11.57455 -11.51024 -11.32511 -10.88108 -10.80981 -10.70999 -10.46160 -10.43664 -10.22955 -9.88839 -9.83639 -9.76909 -9.34545 -8.91546 -8.58285 -8.46236 -8.19790 -6.77226 -5.74404 -3.23514 0.01753 0.58388 1.61857 2.57924 3.03648 3.30940 3.37830 3.44799 3.46752 3.91416 3.97273 4.28172 4.42563 4.48607 4.51938 4.58155 4.74496 4.83456 5.01539 5.04620 5.06403 5.24693 5.31600 5.35406 5.44537 5.45102 5.54629 5.63202 5.66718 5.70541 5.78618 5.83946 5.90039 5.94207 5.99774 6.05628 6.09560 6.27353 6.35410 6.43027 6.55828 6.60823 6.69528 6.81222 6.92123 7.37643 7.73942 7.80321 7.81934 7.89999 8.37368 8.49616 9.21126 9.82553 10.31860 11.29854 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002703 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.287059 B =10356.185651 C =11280.454537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.161 3.839 3 C -0.172 4.172 4 C -0.056 4.056 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.122 4.122 8 C -0.071 4.071 9 C -0.092 4.092 10 C 0.575 3.425 11 O -0.516 6.516 12 N -0.611 5.611 13 C 0.102 3.898 14 C -0.153 4.153 15 C 0.173 3.827 16 H 0.078 0.922 17 N -0.585 5.585 18 C 0.161 3.839 19 C -0.259 4.259 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.905 5.905 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.091 3.909 28 C 0.167 3.833 29 N -0.454 5.454 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.045 0.955 44 H 0.000 1.000 45 H 0.253 0.747 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.510 24.652 4.051 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.008 3.992 3 C -0.192 4.192 4 C -0.082 4.082 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.140 4.140 8 C -0.091 4.091 9 C -0.096 4.096 10 C 0.362 3.638 11 O -0.392 6.392 12 N -0.346 5.346 13 C -0.022 4.022 14 C -0.194 4.194 15 C 0.063 3.937 16 H 0.096 0.904 17 N -0.306 5.306 18 C 0.016 3.984 19 C -0.389 4.389 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.737 3.263 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C -0.033 4.033 28 C 0.043 3.957 29 N -0.163 5.163 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.509 23.531 4.553 25.116 hybrid contribution 0.163 0.313 -0.672 0.759 sum 7.673 23.843 3.881 25.347 Atomic orbital electron populations 1.20808 0.88496 1.03859 1.03442 1.21636 0.97477 0.87964 0.92106 1.21752 0.95065 0.99309 1.03089 1.21443 0.94469 0.96986 0.95272 1.18776 0.94821 0.93836 1.04170 1.21089 0.92485 0.98629 0.97624 1.20826 1.00534 0.91858 1.00822 1.21567 0.92386 0.99472 0.95700 1.19859 0.93424 0.92486 1.03859 1.17496 0.83654 0.82062 0.80601 1.90802 1.28985 1.80537 1.38869 1.48428 1.28839 1.18098 1.39206 1.22164 0.88242 0.99516 0.92231 1.23226 1.01572 0.94901 0.99657 1.21504 0.92573 0.86478 0.93178 0.90410 1.43853 1.56816 0.98071 1.31823 1.20819 0.92538 0.92281 0.92738 1.19264 1.26034 0.99903 0.93678 0.91198 1.25113 0.98726 0.98949 0.96615 1.70076 1.48446 1.14640 1.21777 0.86141 0.78823 0.79322 0.81978 1.20268 1.21603 1.21637 1.23104 0.97111 0.82835 1.00238 1.18511 0.89231 0.91342 0.96574 1.67971 1.08039 1.28468 1.11785 0.90000 0.89848 0.90555 0.84446 0.84198 0.84993 0.84833 0.84281 0.92010 0.92079 0.90646 0.90477 0.94962 0.93668 0.98150 0.93670 0.91321 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.15 36.00 0.37 -0.66 16 2 C 0.16 1.97 6.78 -82.48 -0.56 1.41 16 3 C -0.17 -1.56 9.64 -39.79 -0.38 -1.95 16 4 C -0.06 -0.49 9.90 -39.19 -0.39 -0.88 16 5 C -0.11 -1.28 5.74 -106.83 -0.61 -1.90 16 6 C -0.08 -0.68 9.75 -39.43 -0.38 -1.06 16 7 C -0.12 -1.05 9.93 -40.03 -0.40 -1.45 16 8 C -0.07 -0.80 8.50 -39.16 -0.33 -1.14 16 9 C -0.09 -1.41 5.46 -104.61 -0.57 -1.98 16 10 C 0.57 10.76 7.15 -12.51 -0.09 10.67 16 11 O -0.52 -11.67 16.75 5.28 0.09 -11.58 16 12 N -0.61 -10.78 3.33 -171.64 -0.57 -11.35 16 13 C 0.10 1.43 5.62 -3.06 -0.02 1.42 16 14 C -0.15 -2.47 6.49 -24.90 -0.16 -2.63 16 15 C 0.17 3.54 3.55 -65.66 -0.23 3.30 16 16 H 0.08 1.62 7.96 -51.93 -0.41 1.21 16 17 N -0.59 -14.40 2.96 -170.90 -0.51 -14.91 16 18 C 0.16 3.88 7.54 59.84 0.45 4.34 16 19 C -0.26 -7.03 9.61 -15.06 -0.14 -7.18 16 20 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 21 C 0.00 0.13 5.17 -17.43 -0.09 0.04 16 22 N -0.90 -26.27 10.58 55.49 0.59 -25.69 16 23 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.09 1.85 6.44 -2.41 -0.02 1.84 16 28 C 0.17 2.51 6.59 -84.58 -0.56 1.95 16 29 N -0.45 -7.37 9.23 -7.01 -0.06 -7.43 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 1.37 5.84 -52.49 -0.31 1.07 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.71 5.95 -51.93 -0.31 0.40 16 40 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.08 1.27 6.47 -51.93 -0.34 0.93 16 42 H 0.03 0.86 7.35 -51.93 -0.38 0.48 16 43 H 0.04 1.17 7.29 -51.93 -0.38 0.79 16 44 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.47 6.97 -51.93 -0.36 1.11 16 47 H 0.07 1.64 8.08 -51.93 -0.42 1.22 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -34.92 379.06 -10.49 -45.40 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.59 Total: -1.02 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -4.12 Total: 4.14 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.55 Total: -59.38 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.92 -10.49 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971765316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.618 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds