Wall clock time and date at job start Tue Mar 31 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39230 * 119.15266 * 2 1 4 4 C 1.36638 * 119.90587 * 180.02562 * 3 2 1 5 5 C 1.40796 * 118.15799 * 0.02562 * 4 3 2 6 6 C 1.40474 * 121.26541 * 179.97438 * 5 4 3 7 7 C 1.36313 * 120.08521 * 179.97438 * 6 5 4 8 8 C 1.38912 * 121.05624 * 0.03973 * 7 6 5 9 9 C 1.38705 * 120.72915 * 0.02562 * 8 7 6 10 10 C 1.47434 * 120.33591 * 179.97438 * 9 8 7 11 11 O 1.21603 * 120.00400 * 133.17367 * 10 9 8 12 12 N 1.34780 * 119.99978 * 313.17535 * 10 9 8 13 13 C 1.47028 * 125.64511 * 4.92540 * 12 10 9 14 14 C 1.54323 * 107.26838 * 181.02240 * 13 12 10 15 15 C 1.55155 * 102.94365 * 22.19246 * 14 13 12 16 16 H 1.09003 * 111.01002 * 82.61220 * 15 14 13 17 17 N 1.46506 * 111.00476 * 206.42457 * 15 14 13 18 18 C 1.46494 * 119.99860 * 59.99800 * 17 15 14 19 19 C 1.36938 * 119.99633 * 239.99829 * 17 15 14 20 20 H 1.07992 * 120.00249 * 24.06287 * 19 17 15 21 21 C 1.38814 * 119.99770 * 204.05412 * 19 17 15 22 22 N 1.31630 * 119.99829 * 9.44556 * 21 19 17 23 23 Si 1.86793 * 120.00268 * 189.44240 * 21 19 17 24 24 H 1.48504 * 109.47212 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47363 * 120.00450 * 23 21 19 26 26 H 1.48506 * 109.47128 * 240.00222 * 23 21 19 27 27 C 1.47423 * 125.65110 * 184.61506 * 12 10 9 28 28 C 1.41552 * 118.93910 * 0.02562 * 5 4 3 29 29 N 1.31235 * 119.15948 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46885 * 90.00320 * 1 2 3 31 31 H 1.09001 * 109.47216 * 209.99988 * 1 2 3 32 32 H 1.08994 * 109.47439 * 329.99768 * 1 2 3 33 33 H 1.08001 * 120.05107 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.92192 * 179.72471 * 4 3 2 35 35 H 1.07993 * 119.95516 * 359.96953 * 6 5 4 36 36 H 1.07998 * 119.47431 * 180.02562 * 7 6 5 37 37 H 1.08001 * 119.63399 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.87920 * 300.43636 * 13 12 10 39 39 H 1.08995 * 109.88612 * 61.44898 * 13 12 10 40 40 H 1.09007 * 110.72147 * 140.55444 * 14 13 12 41 41 H 1.09001 * 110.72119 * 263.64893 * 14 13 12 42 42 H 1.09000 * 109.47209 * 94.80661 * 18 17 15 43 43 H 1.09001 * 109.47165 * 214.80442 * 18 17 15 44 44 H 1.08999 * 109.47289 * 334.80461 * 18 17 15 45 45 H 0.97001 * 119.99619 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.36573 * 274.74829 * 27 12 10 47 47 H 1.09005 * 110.36231 * 37.06811 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2322 0.0014 -0.0016 6 6 5.6357 -0.0563 -0.0028 7 6 6.2700 -1.2629 -0.0033 8 6 5.5501 -2.4509 -0.0035 9 6 4.1631 -2.4392 -0.0038 10 6 3.4078 -3.7053 -0.0046 11 8 2.4773 -3.8588 0.7631 12 7 3.7486 -4.6928 -0.8563 13 6 4.9074 -4.6820 -1.7611 14 6 4.8794 -6.0037 -2.5572 15 6 3.3920 -6.4350 -2.4625 16 1 2.7883 -5.9237 -3.2124 17 7 3.2578 -7.8886 -2.5864 18 6 3.9188 -8.7701 -1.6209 19 6 2.5145 -8.4232 -3.6047 20 1 2.3544 -7.8579 -4.5108 21 6 1.9669 -9.6918 -3.4722 22 7 2.0011 -10.3052 -2.3080 23 14 1.1813 -10.5286 -4.9459 24 1 1.2704 -9.6347 -6.1284 25 1 1.8935 -11.8000 -5.2311 26 1 -0.2452 -10.8161 -4.6497 27 6 3.0248 -5.9653 -1.0304 28 6 3.4789 -1.1971 -0.0027 29 7 2.1464 -1.1460 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6323 2.1436 -0.0004 34 1 4.0942 2.1676 -0.0050 35 1 6.2129 0.8564 -0.0033 36 1 7.3495 -1.2957 -0.0037 37 1 6.0763 -3.3941 -0.0043 38 1 4.8362 -3.8359 -2.4446 39 1 5.8288 -4.6145 -1.1826 40 1 5.1666 -5.8349 -3.5952 41 1 5.5293 -6.7464 -2.0947 42 1 3.2178 -9.0312 -0.8281 43 1 4.2510 -9.6774 -2.1255 44 1 4.7793 -8.2577 -1.1909 45 1 1.6181 -11.1915 -2.2154 46 1 3.3576 -6.6950 -0.2922 47 1 1.9498 -5.8045 -0.9482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971765316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:22 Heat of formation + Delta-G solvation = 34.758071 kcal Electronic energy + Delta-G solvation = -29074.215985 eV Core-core repulsion = 25221.955437 eV Total energy + Delta-G solvation = -3852.260548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07745 -40.85569 -38.89112 -38.12733 -36.57327 -34.52473 -33.50369 -32.95806 -31.67345 -30.99201 -29.29038 -28.86176 -28.08975 -25.87620 -24.90706 -24.17071 -23.51058 -23.15906 -21.01379 -20.53653 -19.28518 -18.95243 -18.47304 -17.67086 -17.35675 -17.22726 -16.42631 -16.30010 -15.76385 -15.71633 -15.48876 -15.12859 -14.85667 -14.62744 -14.43013 -14.36990 -14.24680 -13.96674 -13.82920 -13.78154 -13.42717 -13.18158 -13.06699 -12.92214 -12.81211 -12.54860 -12.41155 -12.32535 -12.27080 -12.15081 -12.06334 -11.83216 -11.54176 -11.42929 -11.12389 -10.67796 -10.30866 -9.73203 -9.68255 -9.24294 -8.80548 -7.85485 -5.37389 -0.76309 -0.18472 0.79521 1.45471 1.46784 1.57392 1.64033 1.85555 2.07052 2.49340 3.07063 3.18777 3.26307 3.38518 3.52879 3.67975 3.76709 3.87178 3.90928 3.97201 4.04273 4.13633 4.16082 4.29180 4.35290 4.41752 4.45749 4.61180 4.64630 4.68355 4.72400 4.78150 4.81349 4.93970 4.95802 5.01301 5.06499 5.13053 5.18345 5.20709 5.25155 5.28830 5.37724 5.41126 5.60461 5.62492 5.70850 5.85566 6.29865 6.48809 7.04323 7.09605 7.12367 7.80910 8.25751 9.17361 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002703 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.287059 B =10356.185651 C =11280.454537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.143 3.857 3 C -0.176 4.176 4 C -0.042 4.042 5 C -0.132 4.132 6 C -0.056 4.056 7 C -0.125 4.125 8 C -0.053 4.053 9 C -0.142 4.142 10 C 0.571 3.429 11 O -0.576 6.576 12 N -0.612 5.612 13 C 0.106 3.894 14 C -0.136 4.136 15 C 0.167 3.833 16 H 0.068 0.932 17 N -0.601 5.601 18 C 0.179 3.821 19 C -0.267 4.267 20 H 0.075 0.925 21 C -0.052 4.052 22 N -0.939 5.939 23 Si 0.973 3.027 24 H -0.263 1.263 25 H -0.288 1.288 26 H -0.296 1.296 27 C 0.102 3.898 28 C 0.135 3.865 29 N -0.524 5.524 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.176 0.824 34 H 0.189 0.811 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.079 0.921 42 H -0.002 1.002 43 H 0.022 0.978 44 H 0.035 0.965 45 H 0.249 0.751 46 H 0.053 0.947 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.097 28.982 2.856 31.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.009 4.009 3 C -0.196 4.196 4 C -0.067 4.067 5 C -0.134 4.134 6 C -0.074 4.074 7 C -0.143 4.143 8 C -0.073 4.073 9 C -0.146 4.146 10 C 0.361 3.639 11 O -0.456 6.456 12 N -0.345 5.345 13 C -0.016 4.016 14 C -0.176 4.176 15 C 0.058 3.942 16 H 0.087 0.913 17 N -0.322 5.322 18 C 0.034 3.966 19 C -0.397 4.397 20 H 0.092 0.908 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.801 3.199 24 H -0.188 1.188 25 H -0.214 1.214 26 H -0.223 1.223 27 C -0.024 4.024 28 C 0.013 3.987 29 N -0.234 5.234 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.193 0.807 34 H 0.206 0.794 35 H 0.197 0.803 36 H 0.194 0.806 37 H 0.169 0.831 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.141 27.911 3.327 30.237 hybrid contribution -0.944 -0.863 -0.257 1.305 sum 10.198 27.048 3.070 29.069 Atomic orbital electron populations 1.20880 0.87710 1.04016 1.03854 1.22177 0.98479 0.88658 0.91545 1.22099 0.95821 0.99194 1.02467 1.22020 0.94439 0.97731 0.92516 1.19146 0.96274 0.93389 1.04581 1.21667 0.91299 1.00558 0.93863 1.21267 1.02395 0.90583 1.00020 1.21828 0.90667 1.01523 0.93241 1.19662 0.94849 0.90526 1.09522 1.18259 0.83115 0.83141 0.79342 1.90742 1.31863 1.81674 1.41304 1.48477 1.29511 1.16849 1.39704 1.22370 0.88152 0.98894 0.92155 1.23073 0.97343 0.95719 1.01462 1.21625 0.95868 0.84223 0.92452 0.91335 1.44032 1.56891 0.99790 1.31470 1.20507 0.92695 0.91908 0.91455 1.19627 1.25546 1.00087 0.94455 0.90763 1.25918 0.99808 0.99844 0.99178 1.70259 1.49816 1.14703 1.23721 0.85109 0.77210 0.78271 0.79271 1.18753 1.21441 1.22288 1.22691 0.95304 0.84345 1.00020 1.18841 0.89385 0.92738 0.97758 1.67899 1.09624 1.30987 1.14852 0.89408 0.92871 0.87089 0.80654 0.79399 0.80308 0.80598 0.83101 0.90140 0.88378 0.88543 0.90283 0.98410 0.95911 0.94716 0.94214 0.92870 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 10.15 71.24 0.72 -1.41 16 2 C 0.14 3.56 6.78 42.89 0.29 3.85 16 3 C -0.18 -2.73 9.64 22.13 0.21 -2.52 16 4 C -0.04 -0.55 9.90 22.52 0.22 -0.33 16 5 C -0.13 -2.58 5.74 -21.29 -0.12 -2.70 16 6 C -0.06 -0.65 9.75 22.37 0.22 -0.43 16 7 C -0.13 -1.51 9.93 21.98 0.22 -1.29 16 8 C -0.05 -1.05 8.50 22.54 0.19 -0.86 16 9 C -0.14 -4.36 5.46 -19.86 -0.11 -4.47 16 10 C 0.57 22.76 7.15 86.67 0.62 23.38 16 11 O -0.58 -28.72 16.75 -4.04 -0.07 -28.79 16 12 N -0.61 -22.37 3.33 -815.19 -2.71 -25.08 16 13 C 0.11 2.78 5.62 86.73 0.49 3.27 16 14 C -0.14 -4.16 6.49 31.78 0.21 -3.95 16 15 C 0.17 7.01 3.55 46.46 0.16 7.18 16 16 H 0.07 2.97 7.96 -2.39 -0.02 2.95 16 17 N -0.60 -30.47 2.96 -694.60 -2.06 -32.53 16 18 C 0.18 8.98 7.54 127.77 0.96 9.95 16 19 C -0.27 -14.84 9.61 84.03 0.81 -14.03 16 20 H 0.07 3.97 7.85 -2.91 -0.02 3.95 16 21 C -0.05 -2.98 5.17 84.86 0.44 -2.54 16 22 N -0.94 -56.85 10.58 21.65 0.23 -56.62 16 23 Si 0.97 45.75 29.56 68.60 2.03 47.77 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 C 0.10 4.43 6.44 86.93 0.56 4.99 16 28 C 0.14 4.11 6.59 40.61 0.27 4.38 16 29 N -0.52 -18.06 9.23 -176.10 -1.62 -19.69 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.18 0.43 8.06 -2.91 -0.02 0.40 16 36 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 37 H 0.15 2.47 5.84 -2.91 -0.02 2.46 16 38 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.10 1.91 5.95 -2.39 -0.01 1.89 16 40 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.08 2.42 6.47 -2.39 -0.02 2.40 16 42 H 0.00 -0.14 7.35 -2.39 -0.02 -0.16 16 43 H 0.02 1.21 7.29 -2.39 -0.02 1.19 16 44 H 0.03 1.46 6.38 -2.39 -0.02 1.45 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.05 2.45 6.97 -2.39 -0.02 2.43 16 47 H 0.03 1.72 8.08 -2.38 -0.02 1.70 16 Total: -1.00 -87.02 379.06 3.15 -83.87 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.98 Total: 8.59 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 6.36 Total: 22.47 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -6.16 Total: -133.91 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.07 Total: -28.79 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -87.02 3.15 -83.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971765316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.631 kcal (2) G-P(sol) polarization free energy of solvation -87.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds