Wall clock time and date at job start Tue Mar 31 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36351 * 119.95490 * 2 1 4 4 C 1.38862 * 121.05581 * 179.70124 * 3 2 1 5 5 C 1.38742 * 120.72725 * 0.60435 * 4 3 2 6 6 C 1.47438 * 120.33218 * 179.69499 * 5 4 3 7 7 O 1.21606 * 119.99533 * 172.28155 * 6 5 4 8 8 N 1.34776 * 119.99953 * 352.28202 * 6 5 4 9 9 C 1.47423 * 125.64684 * 185.11288 * 8 6 5 10 10 C 1.54905 * 104.83389 * 155.90236 * 9 8 6 11 11 C 1.55164 * 101.58062 * 37.01248 * 10 9 8 12 12 H 1.08995 * 110.71862 * 83.03701 * 11 10 9 13 13 N 1.46492 * 110.71832 * 206.13497 * 11 10 9 14 14 C 1.46506 * 120.00148 * 57.55870 * 13 11 10 15 15 C 1.36936 * 120.00018 * 237.55788 * 13 11 10 16 16 H 1.08001 * 119.99659 * 334.90948 * 15 13 11 17 17 C 1.38813 * 120.00281 * 154.91374 * 15 13 11 18 18 N 1.31616 * 119.99917 * 339.07080 * 17 15 13 19 19 Si 1.86803 * 120.00012 * 159.07751 * 17 15 13 20 20 H 1.48505 * 109.47024 * 265.01616 * 19 17 15 21 21 H 1.48501 * 109.46984 * 25.01443 * 19 17 15 22 22 H 1.48502 * 109.47148 * 145.01628 * 19 17 15 23 23 C 1.47317 * 125.61591 * 5.33080 * 8 6 5 24 24 C 1.41773 * 119.33383 * 359.42727 * 5 4 3 25 25 N 1.33354 * 121.05532 * 180.29942 * 24 5 4 26 26 C 1.31224 * 121.35481 * 179.97438 * 25 24 5 27 27 C 1.39226 * 121.69802 * 359.97438 * 26 25 24 28 28 C 1.36638 * 119.90784 * 359.97438 * 27 26 25 29 29 C 1.40434 * 119.96018 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47165 * 269.97266 * 1 2 3 31 31 H 1.08999 * 109.47299 * 29.97960 * 1 2 3 32 32 H 1.09004 * 109.46939 * 149.98258 * 1 2 3 33 33 H 1.08008 * 119.46941 * 0.02562 * 3 2 1 34 34 H 1.08012 * 119.63633 * 180.30577 * 4 3 2 35 35 H 1.09013 * 110.36752 * 37.06474 * 9 8 6 36 36 H 1.09003 * 110.46148 * 274.79034 * 9 8 6 37 37 H 1.08997 * 111.00873 * 278.93463 * 10 9 8 38 38 H 1.08998 * 111.03502 * 155.09665 * 10 9 8 39 39 H 1.09000 * 109.46805 * 263.25598 * 14 13 11 40 40 H 1.08993 * 109.47052 * 23.25487 * 14 13 11 41 41 H 1.09001 * 109.47041 * 143.25850 * 14 13 11 42 42 H 0.97002 * 119.99792 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.06463 * 61.68866 * 23 8 6 44 44 H 1.08993 * 109.85113 * 300.42506 * 23 8 6 45 45 H 1.08004 * 119.14613 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.04513 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.92104 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5762 1.2081 0.0062 5 6 4.3079 0.0293 0.0000 6 6 5.7818 0.0678 -0.0001 7 8 6.4168 -0.9603 0.1359 8 7 6.4251 1.2425 -0.1510 9 6 7.8841 1.4131 -0.2760 10 6 8.0635 2.7587 -1.0221 11 6 6.9112 3.6051 -0.4194 12 1 7.2114 4.0428 0.5326 13 7 6.4892 4.6484 -1.3573 14 6 6.0280 4.2841 -2.6993 15 6 6.5258 5.9641 -0.9796 16 1 6.4634 6.2277 0.0659 17 6 6.6430 6.9591 -1.9404 18 7 7.1233 6.6705 -3.1313 19 14 6.1193 8.7076 -1.5430 20 1 4.7230 8.9223 -2.0008 21 1 6.1986 8.9269 -0.0764 22 1 7.0200 9.6637 -2.2359 23 6 5.7865 2.5686 -0.2136 24 6 3.6241 -1.2126 -0.0005 25 7 4.2931 -2.3663 -0.0004 26 6 3.6662 -3.5191 -0.0003 27 6 2.2761 -3.5959 0.0002 28 6 1.5305 -2.4508 0.0012 29 6 2.2083 -1.2167 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6384 2.1113 0.0004 34 1 4.0921 2.1570 0.0111 35 1 8.3131 0.5968 -0.8574 36 1 8.3480 1.4608 0.7092 37 1 7.9332 2.6301 -2.0966 38 1 9.0332 3.2036 -0.7988 39 1 6.8517 4.3838 -3.4060 40 1 5.6758 3.2527 -2.6949 41 1 5.2133 4.9450 -2.9953 42 1 7.2055 7.3659 -3.8026 43 1 5.2591 2.7740 0.7179 44 1 5.0908 2.6051 -1.0518 45 1 4.2436 -4.4318 -0.0006 46 1 1.7878 -4.5592 0.0007 47 1 0.4513 -2.4913 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971964098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:51 Heat of formation + Delta-G solvation = 61.876677 kcal Electronic energy + Delta-G solvation = -29454.946157 eV Core-core repulsion = 25603.861560 eV Total energy + Delta-G solvation = -3851.084597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17190 -40.88226 -38.80744 -38.22459 -36.43949 -35.16806 -33.42092 -32.48658 -31.68272 -31.15408 -29.52378 -28.31974 -28.01792 -25.75687 -25.01270 -24.67907 -23.98818 -22.20544 -21.12971 -20.68409 -19.34746 -18.89390 -18.09987 -17.94459 -17.40567 -17.15319 -16.48548 -16.13576 -15.77388 -15.58226 -15.36060 -15.17525 -14.88407 -14.81690 -14.43125 -14.31610 -14.18889 -14.04787 -13.95836 -13.84251 -13.32038 -13.02867 -12.91992 -12.84961 -12.69801 -12.57198 -12.38537 -12.36302 -12.34186 -12.05329 -11.82789 -11.73831 -11.42618 -11.35704 -11.08368 -10.59191 -10.14467 -9.84024 -9.66755 -9.15227 -8.76993 -7.82177 -5.31396 -0.85157 -0.17601 0.73893 1.50887 1.53171 1.61454 1.70935 1.90383 2.18471 2.53966 3.12499 3.25361 3.29593 3.36054 3.60505 3.66402 3.77399 3.82050 3.87214 3.95163 3.96720 4.09027 4.26198 4.26929 4.35118 4.42162 4.46892 4.49971 4.60968 4.74347 4.76492 4.82457 4.85106 4.88869 4.93463 4.98775 5.07594 5.10833 5.18544 5.19815 5.22482 5.30327 5.38270 5.43680 5.58491 5.66017 5.71833 5.84741 6.33038 6.46524 7.04582 7.13731 7.18835 7.84480 8.31431 9.20060 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.003070 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.394745 B = 9117.216864 C =10481.338238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.083 4.083 5 C -0.157 4.157 6 C 0.563 3.437 7 O -0.553 6.553 8 N -0.613 5.613 9 C 0.116 3.884 10 C -0.140 4.140 11 C 0.164 3.836 12 H 0.088 0.912 13 N -0.594 5.594 14 C 0.169 3.831 15 C -0.268 4.268 16 H 0.077 0.923 17 C -0.044 4.044 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.287 1.287 21 H -0.265 1.265 22 H -0.301 1.301 23 C 0.082 3.918 24 C 0.139 3.861 25 N -0.499 5.499 26 C 0.120 3.880 27 C -0.173 4.173 28 C -0.052 4.052 29 C -0.130 4.130 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.007 0.993 40 H 0.031 0.969 41 H 0.015 0.985 42 H 0.248 0.752 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.176 0.824 46 H 0.179 0.821 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.246 -16.835 7.489 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.027 4.027 3 C -0.161 4.161 4 C -0.102 4.102 5 C -0.161 4.161 6 C 0.354 3.646 7 O -0.432 6.432 8 N -0.347 5.347 9 C -0.006 4.006 10 C -0.180 4.180 11 C 0.056 3.944 12 H 0.106 0.894 13 N -0.315 5.315 14 C 0.024 3.976 15 C -0.398 4.398 16 H 0.095 0.905 17 C -0.241 4.241 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.214 1.214 21 H -0.189 1.189 22 H -0.228 1.228 23 C -0.042 4.042 24 C 0.017 3.983 25 N -0.207 5.207 26 C -0.051 4.051 27 C -0.193 4.193 28 C -0.077 4.077 29 C -0.132 4.132 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.179 0.821 34 H 0.189 0.811 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.025 0.975 40 H 0.049 0.951 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.193 0.807 46 H 0.196 0.804 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.972 -17.195 7.432 23.980 hybrid contribution -0.229 1.053 -0.386 1.145 sum -15.201 -16.142 7.045 23.265 Atomic orbital electron populations 1.21057 0.87192 1.05018 1.04386 1.20405 0.98390 0.91014 0.92928 1.21139 0.93138 0.99664 1.02158 1.23148 0.96047 0.99195 0.91829 1.19764 0.92252 0.93505 1.10562 1.18059 0.87662 0.81933 0.76930 1.90763 1.68562 1.33156 1.50682 1.48506 1.08520 1.05893 1.71787 1.22178 0.80258 0.97514 1.00669 1.23221 1.00941 0.94260 0.99572 1.21547 0.90984 0.87813 0.94086 0.89431 1.44014 1.74009 1.01926 1.11529 1.20514 0.96293 0.94643 0.86119 1.19522 1.44474 0.82499 0.93255 0.90498 1.25732 1.00000 1.01490 0.96876 1.70257 1.47329 1.33503 1.06356 0.85325 0.77273 0.80211 0.78065 1.21438 1.18924 1.22831 1.23139 0.97529 0.81726 1.01781 1.18840 0.90572 0.91578 0.97342 1.68251 1.40946 0.98630 1.12851 1.23699 0.93863 0.95892 0.91663 1.22319 0.94341 1.01403 1.01205 1.21978 1.02282 0.89986 0.93458 1.18979 0.92627 0.96506 1.05087 0.88652 0.89364 0.89309 0.82139 0.81122 0.91620 0.90245 0.92542 0.89803 0.97469 0.95057 0.96617 0.94298 0.89054 0.90379 0.80682 0.80366 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.53 71.24 0.68 -0.42 16 2 C -0.03 -0.49 5.89 -19.77 -0.12 -0.61 16 3 C -0.14 -3.01 9.57 21.98 0.21 -2.79 16 4 C -0.08 -2.27 8.60 22.54 0.19 -2.07 16 5 C -0.16 -5.30 5.90 -19.86 -0.12 -5.42 16 6 C 0.56 21.72 7.79 86.67 0.68 22.39 16 7 O -0.55 -24.75 15.52 -4.05 -0.06 -24.81 16 8 N -0.61 -21.30 3.33 -829.90 -2.77 -24.07 16 9 C 0.12 3.83 6.89 86.85 0.60 4.43 16 10 C -0.14 -4.95 6.65 31.99 0.21 -4.74 16 11 C 0.16 6.12 3.43 46.19 0.16 6.28 16 12 H 0.09 3.17 7.94 -2.39 -0.02 3.15 16 13 N -0.59 -27.32 2.92 -696.14 -2.03 -29.35 16 14 C 0.17 7.89 7.70 127.77 0.98 8.88 16 15 C -0.27 -13.61 9.52 84.03 0.80 -12.81 16 16 H 0.08 3.75 7.91 -2.91 -0.02 3.72 16 17 C -0.04 -2.36 4.96 84.86 0.42 -1.94 16 18 N -0.93 -53.13 11.30 21.65 0.24 -52.89 16 19 Si 0.96 42.87 29.60 68.60 2.03 44.90 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 23 C 0.08 2.65 4.40 86.67 0.38 3.04 16 24 C 0.14 4.48 6.61 40.61 0.27 4.75 16 25 N -0.50 -16.74 8.47 -187.97 -1.59 -18.33 16 26 C 0.12 2.75 11.15 85.02 0.95 3.69 16 27 C -0.17 -2.58 10.03 22.13 0.22 -2.36 16 28 C -0.05 -0.79 9.36 22.52 0.21 -0.58 16 29 C -0.13 -3.01 5.74 -21.29 -0.12 -3.13 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.09 0.52 6.42 -2.38 -0.02 0.50 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.17 4.57 2.71 -8.68 -0.02 4.55 16 35 H 0.07 2.24 8.09 -2.38 -0.02 2.22 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 37 H 0.06 2.21 7.24 -2.39 -0.02 2.20 16 38 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.01 0.37 7.22 -2.39 -0.02 0.36 16 40 H 0.03 1.27 6.38 -2.39 -0.02 1.26 16 41 H 0.02 0.76 7.75 -2.39 -0.02 0.74 16 42 H 0.25 13.87 8.31 -92.71 -0.77 13.09 16 43 H 0.09 2.60 6.84 -2.39 -0.02 2.58 16 44 H 0.08 2.62 4.74 -2.39 -0.01 2.60 16 45 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 46 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 47 H 0.18 1.18 6.42 -2.91 -0.02 1.16 16 Total: -1.00 -75.82 370.83 3.42 -72.40 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.99 Total: 15.57 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.61 Total: 16.58 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -6.14 Total: -124.64 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -75.82 3.42 -72.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971964098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.277 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds